Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049688 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 1.8e-72 275.8 134 100.0
CSS0045616 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 1.5e-34 149.8 280 39.3
CAN.G1113.1 Capsicum annuum HOM05D003588 ORTHO05D004252 3.9e-27 125.2 152 48.0
vmacro05528 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 4.7e-25 118.2 269 34.2
GSVIVG01030979001 Vitis vinifera HOM05D003588 ORTHO05D004252 4.0e-24 115.2 280 32.5
vmacro22953 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 3.7e-22 108.6 294 31.3
Duzib138G1780 Durio zibethinus HOM05D003588 ORTHO05D004252 1.6e-20 103.2 280 30.4
Rhsim10G0072600 Rhododendron simsii HOM05D003588 ORTHO05D004252 1.6e-20 103.2 287 31.4
CANSAT78G2002 Cannabis sativa HOM05D003588 ORTHO05D004252 3.9e-19 98.6 280 30.0
Nitab4.5_0000753g0220 Nicotiana tabacum HOM05D003588 ORTHO05D004252 1.5e-18 96.7 279 30.8
Phvul.004G002300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 5.6e-18 94.7 278 28.4
QL02p050339 Quercus lobata HOM05D003588 ORTHO05D004252 5.6e-18 94.7 280 29.6
QL04p012047 Quercus lobata HOM05D003588 ORTHO05D004252 5.6e-18 94.7 280 29.6
Peaxi162Scf00877g00020 Petunia axillaris HOM05D003588 ORTHO05D004252 7.3e-18 94.4 279 30.5
Nitab4.5_0008521g0020 Nicotiana tabacum HOM05D003588 ORTHO05D004252 9.5e-18 94.0 279 30.1
SGA_v2.0_scaffold49G18119 Striga asiatica HOM05D003588 ORTHO05D004252 4.7e-17 91.7 239 32.2
TWI53G1720 Tripterygium wilfordii HOM05D003588 ORTHO05D004252 6.2e-17 91.3 110 50.0
MSTRG.2779 Avicennia marina HOM05D003588 ORTHO05D004252 1.1e-16 90.5 278 28.8
Cc07_g08540 Coffea canephora HOM05D003588 ORTHO05D004252 1.1e-16 90.5 278 28.8
Gohir.A11G165800 Gossypium hirsutum HOM05D003588 ORTHO05D004252 1.8e-16 89.7 280 27.5
Psat3g097680 Pisum sativum HOM05D003588 ORTHO05D004252 1.8e-16 89.7 227 32.2
MBI16_g38076_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 3.1e-16 89.0 289 28.4
DCAR_025903 Daucus carota HOM05D003588 ORTHO05D004252 5.2e-16 88.2 102 52.9
Gohir.D11G172000 Gossypium hirsutum HOM05D003588 ORTHO05D004252 5.2e-16 88.2 280 27.5
Gorai.007G184400 Gossypium raimondii HOM05D003588 ORTHO05D004252 8.9e-16 87.4 280 27.5
Solyc02g086330.4 Solanum lycopersicum HOM05D003588 ORTHO05D004252 8.9e-16 87.4 277 28.5
Sopen02g031000 Solanum pennellii HOM05D003588 ORTHO05D004252 1.2e-15 87.0 277 28.5
Actinidia15898 Actinidia chinensis HOM05D003588 ORTHO05D004252 1.5e-15 86.7 243 30.0
Manes.02G071350 Manihot esculenta HOM05D003588 ORTHO05D004252 2.6e-15 85.9 57 78.9
arahy.Tifrunner.gnm1.ann1.CE0ZIG Arachis hypogaea HOM05D003588 ORTHO05D004252 7.6e-15 84.3 83 55.4
arahy.Tifrunner.gnm1.ann1.K3Z2GB Arachis hypogaea HOM05D003588 ORTHO05D004252 7.6e-15 84.3 83 55.4
Dinv33964 Davidia involucrata HOM05D003588 ORTHO05D004252 7.6e-15 84.3 51 76.5
Dinv34794 Davidia involucrata HOM05D003588 ORTHO05D004252 7.6e-15 84.3 51 76.5
Eucgr.F02790 Eucalyptus grandis HOM05D003588 ORTHO05D004252 7.6e-15 84.3 47 89.4
Lj4C184G4 Lonicera japonica HOM05D003588 ORTHO05D004252 7.6e-15 84.3 47 89.4
Lj2g0002647 Lotus japonicus HOM05D003588 ORTHO05D004252 7.6e-15 84.3 57 73.7
Sc10g0001060 Simmondsia chinensis HOM05D003588 ORTHO05D004252 7.6e-15 84.3 49 83.7
Ah.10g037630 Amaranthus hybridus HOM05D003588 ORTHO05D004252 9.9e-15 84.0 278 27.0
COL.COLO4_09374 Corchorus olitorius HOM05D003588 ORTHO05D004252 9.9e-15 84.0 47 87.2
Gohir.A07G174400 Gossypium hirsutum HOM05D003588 ORTHO05D004252 9.9e-15 84.0 47 87.2
Gohir.D07G181700 Gossypium hirsutum HOM05D003588 ORTHO05D004252 9.9e-15 84.0 47 87.2
Gorai.001G202700 Gossypium raimondii HOM05D003588 ORTHO05D004252 9.9e-15 84.0 47 87.2
PSO017G4387 Papaver somniferum HOM05D003588 ORTHO05D004252 9.9e-15 84.0 47 87.2
PSO478G1111 Papaver somniferum HOM05D003588 ORTHO05D004252 9.9e-15 84.0 47 87.2
Thecc.04G128900 Theobroma cacao HOM05D003588 ORTHO05D004252 9.9e-15 84.0 47 87.2
VMungo0464G0444 Vigna mungo HOM05D003588 ORTHO05D004252 9.9e-15 84.0 101 46.5
CiPaw.04G044200 Carya illinoinensis HOM05D003588 ORTHO05D004252 1.3e-14 83.6 47 85.1
Phvul.008G008300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 1.3e-14 83.6 57 75.4
VMungo1383G2782 Vigna mungo HOM05D003588 ORTHO05D004252 1.3e-14 83.6 57 75.4
arahy.Tifrunner.gnm1.ann1.JMF5N7 Arachis hypogaea HOM05D003588 ORTHO05D004252 1.7e-14 83.2 62 69.4
arahy.Tifrunner.gnm1.ann1.QJYU1D Arachis hypogaea HOM05D003588 ORTHO05D004252 1.7e-14 83.2 62 69.4
BcaNung02226 Brassica carinata HOM05D003588 ORTHO05D004252 1.7e-14 83.2 253 27.7
Psat1g004680 Pisum sativum HOM05D003588 ORTHO05D004252 2.2e-14 82.8 47 87.2
Ca_04138_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 2.9e-14 82.4 47 83.0
arahy.Tifrunner.gnm1.ann1.SZ4JBM Arachis hypogaea HOM05D003588 ORTHO05D009236 3.7e-14 82.0 266 27.1
CAN.G625.55 Capsicum annuum HOM05D003588 ORTHO05D000105 3.7e-14 82.0 50 84.0
Duzib133G0570 Durio zibethinus HOM05D003588 ORTHO05D004252 3.7e-14 82.0 47 85.1
MD09G1255900 Malus domestica HOM05D003588 ORTHO05D004252 3.7e-14 82.0 47 85.1
Prupe.3G148000 Prunus persica HOM05D003588 ORTHO05D004252 3.7e-14 82.0 47 85.1
CSS0016689 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 4.9e-14 81.6 47 85.1
CSS0025104 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 4.9e-14 81.6 51 76.5
Manes.01G112900 Manihot esculenta HOM05D003588 ORTHO05D004252 6.4e-14 81.3 288 25.3
Medtr7g082650 Medicago truncatula HOM05D003588 ORTHO05D004252 6.4e-14 81.3 47 85.1
TPR.G16544 Trifolium pratense HOM05D003588 ORTHO05D004252 6.4e-14 81.3 47 85.1
Cpa.g.sc170.32 Carica papaya HOM05D003588 ORTHO05D004252 8.4e-14 80.9 51 78.4
Glyma.02G089000 Glycine max HOM05D003588 ORTHO05D004252 8.4e-14 80.9 57 71.9
Lalb_Chr10g0091441 Lupinus albus HOM05D003588 ORTHO05D004252 8.4e-14 80.9 57 70.2
MD17G1249900 Malus domestica HOM05D003588 ORTHO05D004252 8.4e-14 80.9 47 83.0
Nn4g23954 Nelumbo nucifera HOM05D003588 ORTHO05D004252 8.4e-14 80.9 47 83.0
TAR622G0110 Trochodendron aralioides HOM05D003588 ORTHO05D004252 8.4e-14 80.9 47 85.1
Haze_14184 Corylus avellana HOM05D003588 ORTHO05D004252 1.1e-13 80.5 47 80.9
Glyma.05G002100 Glycine max HOM05D003588 ORTHO05D004252 1.1e-13 80.5 47 78.7
Hma1.2p1_0391F.1_g142780 Hydrangea macrophylla HOM05D003588 ORTHO05D004252 1.1e-13 80.5 57 71.9
Aqoxy3G00199 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 1.4e-13 80.1 47 85.1
Migut.H00238 Erythranthe guttata HOM05D003588 ORTHO05D004252 1.4e-13 80.1 47 80.9
FAN01G1119 Fragaria x ananassa HOM05D003588 ORTHO05D004252 1.4e-13 80.1 113 46.0
PGR004G1031 Punica granatum HOM05D003588 ORTHO05D004252 1.4e-13 80.1 47 83.0
Psat1g052560 Pisum sativum HOM05D003588 ORTHO05D004252 1.9e-13 79.7 47 78.7
Lj1g0020363 Lotus japonicus HOM05D003588 ORTHO05D004252 2.4e-13 79.3 47 83.0
Hund16184 Selenicereus undatus HOM05D003588 ORTHO05D004252 2.4e-13 79.3 47 80.9
TPR.G25232 Trifolium pratense HOM05D003588 ORTHO05D004252 2.4e-13 79.3 46 82.6
TPR.G25236 Trifolium pratense HOM05D003588 ORTHO05D004252 2.4e-13 79.3 46 82.6
Atru.chr1.1617 Acer truncatum HOM05D003588 ORTHO05D004252 3.2e-13 79.0 47 83.0
Ca_08090_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 3.2e-13 79.0 46 84.8
Potri.004G095900 Populus trichocarpa HOM05D003588 ORTHO05D004252 3.2e-13 79.0 47 80.9
Sabra04G0065000 Salix brachista HOM05D003588 ORTHO05D004252 3.2e-13 79.0 47 80.9
THA.LOC104820941 Tarenaya hassleriana HOM05D003588 ORTHO05D004252 3.2e-13 79.0 57 71.9
RcHm_v2.0_Chr3g0494121 Rosa chinensis HOM05D003588 ORTHO05D004252 4.1e-13 78.6 47 83.0
Aa31LG11G13400 Aethionema arabicum HOM05D003588 ORTHO05D004252 7.1e-13 77.8 57 70.2
Sp6g27950 Schrenkiella parvula HOM05D003588 ORTHO05D004252 7.1e-13 77.8 115 42.6
Zm00001eb341840 Zea mays HOM05D003588 ORTHO05D004252 7.1e-13 77.8 47 78.7
Oeu050384.1 Olea europaea HOM05D003588 ORTHO05D004252 9.2e-13 77.4 47 80.9
ClCG11G007740 Citrullus lanatus HOM05D003588 ORTHO05D004252 1.2e-12 77.0 47 78.7
MELO3C008156.2 Cucumis melo HOM05D003588 ORTHO05D004252 1.6e-12 76.6 47 76.6
CsaV3_2G033840 Cucumis sativus L. HOM05D003588 ORTHO05D004252 1.6e-12 76.6 47 76.6
Medtr6g004240 Medicago truncatula HOM05D003588 ORTHO05D004252 1.6e-12 76.6 47 76.6
EL10Ac2g04530 Beta vulgaris HOM05D003588 ORTHO05D004252 2.1e-12 76.3 47 76.6
BcaC03g18474 Brassica carinata HOM05D003588 ORTHO05D004252 2.1e-12 76.3 57 68.4
A02p03430 Brassica napus HOM05D003588 ORTHO05D004252 2.1e-12 76.3 57 68.4
C02p08190 Brassica napus HOM05D003588 ORTHO05D004252 2.1e-12 76.3 57 68.4
BolC2t06743H Brassica oleracea HOM05D003588 ORTHO05D004252 2.1e-12 76.3 57 68.4
BraA02t05314Z Brassica rapa HOM05D003588 ORTHO05D004252 2.1e-12 76.3 57 68.4
Os01g0514300 Oryza sativa ssp. japonica HOM05D003588 ORTHO05D004252 2.1e-12 76.3 47 78.7
AL6G27090 Arabidopsis lyrata HOM05D003588 ORTHO05D004252 2.7e-12 75.9 57 68.4
AT5G16210 Arabidopsis thaliana HOM05D003588 ORTHO05D004252 2.7e-12 75.9 57 68.4
BcaC03g18481 Brassica carinata HOM05D003588 ORTHO05D004252 2.7e-12 75.9 57 68.4
Carub.0006s1440 Capsella rubella HOM05D003588 ORTHO05D004252 2.7e-12 75.9 57 68.4
FvH4_7g07990 Fragaria vesca HOM05D003588 ORTHO05D004252 2.7e-12 75.9 47 80.9
FAN03G2066 Fragaria x ananassa HOM05D003588 ORTHO05D004252 2.7e-12 75.9 47 80.9
FAN10G2177 Fragaria x ananassa HOM05D003588 ORTHO05D004252 2.7e-12 75.9 47 80.9
Ciclev10010937m.g Citrus clementina HOM05D003588 ORTHO05D004252 3.5e-12 75.5 47 80.9
Lalb_Chr06g0176731 Lupinus albus HOM05D003588 ORTHO05D004252 3.5e-12 75.5 57 66.7
Thhalv10012470m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 4.6e-12 75.1 57 68.4
BcaB05g22772 Brassica carinata HOM05D003588 ORTHO05D004252 6.0e-12 74.7 47 78.7
ECA232G2944 Erigeron canadensis HOM05D003588 ORTHO05D004252 6.0e-12 74.7 116 42.2
FAN06G2375 Fragaria x ananassa HOM05D003588 ORTHO05D004252 7.8e-12 74.3 47 78.7
MD17G1249700 Malus domestica HOM05D003588 ORTHO05D004252 7.8e-12 74.3 47 80.9
Lsat_1_v5_gn_4_155600 Lactuca sativa HOM05D003588 ORTHO05D004252 1.0e-11 73.9 57 66.7
unitig_899.g14514 Utricularia gibba HOM05D003588 ORTHO05D004252 1.3e-11 73.6 82 46.3
CARHR197100 Cardamine hirsuta HOM05D003588 ORTHO05D004252 1.7e-11 73.2 57 66.7
AUR62009039 Chenopodium quinoa HOM05D003588 ORTHO05D004252 1.7e-11 73.2 47 72.3
AUR62023267 Chenopodium quinoa HOM05D003588 ORTHO05D004252 1.7e-11 73.2 47 72.3
ATR0681G033 Amborella trichopoda HOM05D003588 ORTHO05D004252 3.0e-11 72.4 51 68.6
Sed0005237 Sechium edule HOM05D003588 ORTHO05D004252 3.0e-11 72.4 51 62.7
HanXRQChr09g0262691 Helianthus annuus HOM05D003588 ORTHO05D004252 1.1e-10 70.5 57 66.7
Lsat_1_v5_gn_5_147680 Lactuca sativa HOM05D003588 ORTHO05D004252 1.9e-10 69.7 57 61.4
BcaC04g18898 Brassica carinata HOM05D003588 ORTHO05D004252 2.5e-10 69.3 44 77.3
MBI16_g39817_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 3.3e-10 68.9 53 60.4
Mapoly0103s0005 Marchantia polymorpha HOM05D003588 ORTHO05D004252 5.2e-08 61.6 53 56.6
MD17G1249200 Malus domestica HOM05D003588 ORTHO05D004252 6.8e-08 61.2 51 54.9
Pp3c18_21770 Physcomitrium patens HOM05D003588 ORTHO05D004252 4.4e-07 58.5 46 60.9
Pp3c18_21850 Physcomitrium patens HOM05D003588 ORTHO05D004252 4.4e-07 58.5 46 60.9
arahy.Tifrunner.gnm1.ann1.3AG3I6 Arachis hypogaea HOM05D003588 ORTHO05D004252 1.3e-06 57.0 46 65.2
Zm00001eb341830 Zea mays HOM05D003588 ORTHO05D004252 1.3e-06 57.0 47 55.3


User provided reference genes

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