Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 3.9e-176 621.3 305 100.0
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.1e-173 613.2 305 98.7
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 3.8e-46 189.5 284 41.2
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 1.2e-44 184.5 185 54.1
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 2.2e-41 173.7 260 40.0
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 3.4e-39 166.4 184 51.6
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 5.9e-39 165.6 186 51.1
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 2.1e-36 157.1 193 42.0
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 7.9e-36 155.2 188 44.7
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 1.4e-35 154.5 200 46.0
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 5.1e-35 152.5 321 35.8
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 8.8e-35 151.8 205 42.4
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 2.6e-34 150.2 198 46.5
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 6.3e-33 145.6 190 42.6
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 2.4e-32 143.7 311 34.7
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 1.2e-31 141.4 201 40.8
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 2.0e-31 140.6 180 43.3
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 3.4e-31 139.8 186 35.5
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 2.2e-30 137.1 187 44.4
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 2.2e-30 137.1 186 36.6
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 2.9e-30 136.7 284 35.9
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 1.1e-29 134.8 202 37.6
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 3.2e-29 133.3 201 41.3
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 3.2e-29 133.3 170 36.5
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.2e-28 131.3 191 38.7
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 1.6e-28 131.0 250 36.8
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 2.1e-28 130.6 203 36.9
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 2.7e-28 130.2 202 35.6
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 2.7e-28 130.2 194 38.7
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 3.6e-28 129.8 199 36.7
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 6.1e-28 129.0 204 39.2
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 8.0e-28 128.6 192 41.1
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 8.0e-28 128.6 209 37.3
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 1.0e-27 128.3 196 36.2
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.0e-27 128.3 250 34.0
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 1.4e-27 127.9 175 41.1
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 2.3e-27 127.1 192 37.5
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 2.3e-27 127.1 191 40.8
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 3.9e-27 126.3 201 38.3
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 3.9e-27 126.3 242 32.6
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 3.9e-27 126.3 242 32.6
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 3.9e-27 126.3 192 38.5
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 5.2e-27 125.9 199 40.7
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 5.2e-27 125.9 180 39.4
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 5.2e-27 125.9 181 38.7
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 5.2e-27 125.9 200 38.5
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 8.8e-27 125.2 176 41.5
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 1.1e-26 124.8 181 40.9
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 1.5e-26 124.4 248 36.3
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 1.5e-26 124.4 248 36.3
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 1.5e-26 124.4 200 47.5
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.0e-26 124.0 178 38.2
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 2.0e-26 124.0 176 42.6
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.6e-26 123.6 177 39.5
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 3.3e-26 123.2 238 33.2
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 4.4e-26 122.9 197 39.1
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 4.4e-26 122.9 188 39.4
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 4.4e-26 122.9 188 37.8
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 4.4e-26 122.9 177 37.9
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 4.4e-26 122.9 198 38.4
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 5.7e-26 122.5 177 39.0
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 7.4e-26 122.1 186 37.1
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 7.4e-26 122.1 186 37.1
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 9.7e-26 121.7 181 39.2
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 1.3e-25 121.3 211 34.6
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 1.3e-25 121.3 182 37.9
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 1.3e-25 121.3 177 37.9
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 1.3e-25 121.3 200 36.0
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 1.7e-25 120.9 178 42.1
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 2.2e-25 120.6 184 35.9
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 2.2e-25 120.6 249 33.7
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 4.8e-25 119.4 178 37.1
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 4.8e-25 119.4 179 38.5
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.8e-25 119.4 176 36.9
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 4.8e-25 119.4 180 38.9
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 4.8e-25 119.4 181 37.0
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 6.3e-25 119.0 189 39.7
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 1.1e-24 118.2 182 39.6
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 1.1e-24 118.2 179 36.3
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 1.1e-24 118.2 179 39.7
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 1.4e-24 117.9 177 37.3
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 1.4e-24 117.9 195 35.9
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 2.4e-24 117.1 213 34.7
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 2.4e-24 117.1 189 37.0
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 2.4e-24 117.1 186 36.0
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 2.4e-24 117.1 201 35.8
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 3.1e-24 116.7 186 36.0
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 3.1e-24 116.7 186 36.0
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 7.0e-24 115.5 188 38.3
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 7.0e-24 115.5 177 37.3
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 9.1e-24 115.2 190 39.5
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 9.1e-24 115.2 190 39.5
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 1.2e-23 114.8 189 34.9
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 1.6e-23 114.4 184 35.9
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 1.6e-23 114.4 190 39.5
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 2.0e-23 114.0 177 36.2
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 3.5e-23 113.2 191 39.3
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 3.5e-23 113.2 209 34.4
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 3.5e-23 113.2 192 37.0
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 3.5e-23 113.2 192 32.8
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 5.9e-23 112.5 180 37.8
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 5.9e-23 112.5 175 38.3
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 1.0e-22 111.7 191 34.0
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.0e-22 111.7 177 38.4
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 1.0e-22 111.7 181 35.4
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 1.3e-22 111.3 196 36.2
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 1.7e-22 110.9 177 34.5
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 1.7e-22 110.9 190 33.7
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 1.7e-22 110.9 170 37.1
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 2.2e-22 110.5 221 33.9
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 2.2e-22 110.5 221 33.9
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 2.2e-22 110.5 160 42.5
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 2.9e-22 110.2 178 37.1
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 3.8e-22 109.8 177 36.7
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 3.8e-22 109.8 186 36.6
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 5.0e-22 109.4 177 35.6
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 5.0e-22 109.4 177 35.6
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 5.0e-22 109.4 190 35.8
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 5.0e-22 109.4 252 30.6
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 6.5e-22 109.0 177 35.6
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 1.1e-21 108.2 192 35.4
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 1.5e-21 107.8 205 33.2
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 3.2e-21 106.7 205 32.7
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 3.2e-21 106.7 205 32.7
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 3.2e-21 106.7 182 36.3
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 3.2e-21 106.7 188 36.2
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 7.2e-21 105.5 169 39.6
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 2.7e-20 103.6 177 34.5
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 2.7e-20 103.6 177 33.9
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 2.7e-20 103.6 177 33.9
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 3.6e-20 103.2 192 31.2
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 4.7e-20 102.8 188 30.9
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 6.1e-20 102.4 182 36.3
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 1.4e-19 101.3 179 38.0
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 1.8e-19 100.9 193 32.6
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 2.3e-19 100.5 200 31.5
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 3.0e-19 100.1 100 56.0
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 6.7e-19 99.0 179 36.9
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 8.8e-19 98.6 190 33.2
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 8.8e-19 98.6 185 34.1
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 2.0e-18 97.4 186 34.4
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 7.5e-18 95.5 143 40.6
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.2e-17 94.0 153 33.3
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 4.8e-17 92.8 173 33.5
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 6.3e-17 92.4 156 38.5
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.4e-16 91.3 153 31.4
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 2.4e-16 90.5 191 37.7
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 7.0e-16 89.0 153 31.4
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 9.1e-16 88.6 175 31.4
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 1.6e-15 87.8 198 33.8
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 2.7e-15 87.0 174 32.8
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 4.5e-15 86.3 198 31.3
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 7.7e-15 85.5 198 29.8
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.3e-14 84.7 198 28.8
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 1.7e-14 84.3 179 33.0
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 3.6e-12 76.6 151 33.1
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 4.7e-12 76.3 191 34.0
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 1.8e-11 74.3 207 30.4
Pp3c10_16350 Physcomitrium patens HOM05D004173 ORTHO05D004885 5.2e-11 72.8 158 31.6
CBR_g24287 Chara braunii HOM05D004173 ORTHO05D004885 9.8e-10 68.6 231 24.2
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 2.2e-09 67.4 129 27.9
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 1.4e-08 64.7 139 33.1
Mapoly0082s0027 Marchantia polymorpha HOM05D004173 ORTHO05D004885 2.4e-08 63.9 221 24.0
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 2.0e-07 60.8 93 35.5
Phvul.009G044000 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 2.0e-07 60.8 62 46.8
Lalb_Chr11g0067791 Lupinus albus HOM05D004173 ORTHO05D004885 2.7e-07 60.5 76 40.8


User provided reference genes

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