Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049642 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 3.3e-259 897.9 466 100.0
CSS0020679 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 2.2e-247 858.6 466 96.8
Rhsim05G0080700 Rhododendron simsii HOM05D006261 ORTHO05D007979 3.0e-183 645.6 488 72.1
vmacro19482 Vaccinium macrocarpon HOM05D006261 ORTHO05D007979 1.1e-182 643.7 494 72.1
TAR381G0774 Trochodendron aralioides HOM05D006261 ORTHO05D007979 1.5e-179 633.3 479 70.8
Hma1.2p1_3161F.1_g333480 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 2.9e-178 629.0 498 68.5
Hma1.2p1_0584F.1_g183110 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 9.2e-177 624.0 497 68.2
GSVIVG01031798001 Vitis vinifera HOM05D006261 ORTHO05D007979 1.7e-175 619.8 472 70.8
Nn5g30173 Nelumbo nucifera HOM05D006261 ORTHO05D007979 1.6e-173 613.2 479 67.8
QL11p038259 Quercus lobata HOM05D006261 ORTHO05D007979 2.6e-171 605.9 480 69.2
TWI31G0850 Tripterygium wilfordii HOM05D006261 ORTHO05D007979 3.4e-171 605.5 474 67.1
Cfa005432 Carpinus fangiana HOM05D006261 ORTHO05D007979 9.2e-169 597.4 479 66.6
Gorai.002G007100 Gossypium raimondii HOM05D006261 ORTHO05D007979 6.0e-168 594.7 472 66.7
Actinidia17850 Actinidia chinensis HOM05D006261 ORTHO05D007979 1.3e-167 593.6 449 73.3
CiPaw.05G054700 Carya illinoinensis HOM05D006261 ORTHO05D007979 1.7e-167 593.2 507 64.3
Lalb_Chr10g0095461 Lupinus albus HOM05D006261 ORTHO05D007979 3.0e-167 592.4 478 66.5
Manes.15G143000 Manihot esculenta HOM05D006261 ORTHO05D007979 3.9e-167 592.0 472 68.0
Prupe.8G116700 Prunus persica HOM05D006261 ORTHO05D007979 8.6e-167 590.9 473 65.1
Atru.chr5.2784_Atru.chr5.2785 Acer truncatum HOM05D006261 ORTHO05D007979 1.1e-166 590.5 475 66.1
Atru.chr5.2799_Atru.chr5.2800 Acer truncatum HOM05D006261 ORTHO05D007979 1.1e-166 590.5 475 66.1
CsaV3_7G008780 Cucumis sativus L. HOM05D006261 ORTHO05D007979 9.6e-166 587.4 470 65.3
MD10G1089700 Malus domestica HOM05D006261 ORTHO05D007979 6.2e-165 584.7 473 65.1
CANSAT25G2015 Cannabis sativa HOM05D006261 ORTHO05D007979 1.1e-164 583.9 471 65.6
Aqoxy6G01433 Aquilegia oxysepala HOM05D006261 ORTHO05D007979 2.0e-163 579.7 477 65.6
Haze_01887 Corylus avellana HOM05D006261 ORTHO05D007979 2.6e-163 579.3 479 64.9
Gohir.A01G006000 Gossypium hirsutum HOM05D006261 ORTHO05D007979 3.4e-163 578.9 476 65.3
Potri.004G144100 Populus trichocarpa HOM05D006261 ORTHO05D007979 4.4e-163 578.6 472 65.0
Ciclev10028211m.g Citrus clementina HOM05D006261 ORTHO05D007979 7.6e-163 577.8 471 65.6
COL.COLO4_11716 Corchorus olitorius HOM05D006261 ORTHO05D007979 7.6e-163 577.8 470 66.0
Thecc.02G096300 Theobroma cacao HOM05D006261 ORTHO05D007979 1.3e-162 577.0 472 66.3
RcHm_v2.0_Chr6g0259011 Rosa chinensis HOM05D006261 ORTHO05D007979 4.9e-162 575.1 468 64.3
FAN27G0123 Fragaria x ananassa HOM05D006261 ORTHO05D007979 1.4e-161 573.5 474 65.0
FAN15G2665 Fragaria x ananassa HOM05D006261 ORTHO05D007979 5.4e-161 571.6 474 65.4
FAN20G2731 Fragaria x ananassa HOM05D006261 ORTHO05D007979 7.1e-161 571.2 474 64.8
Lj9C360T7 Lonicera japonica HOM05D006261 ORTHO05D007979 7.1e-161 571.2 492 63.4
PGSC0003DMG400022938 Solanum tuberosum HOM05D006261 ORTHO05D007979 7.8e-160 567.8 480 63.5
Potri.009G106100 Populus trichocarpa HOM05D006261 ORTHO05D007979 5.1e-159 565.1 472 64.2
Hund06186 Selenicereus undatus HOM05D006261 ORTHO05D007979 5.1e-159 565.1 473 64.9
Solyc11g044870.2 Solanum lycopersicum HOM05D006261 ORTHO05D007979 2.5e-158 562.8 480 63.3
MELO3C018434.2 Cucumis melo HOM05D006261 ORTHO05D007979 8.1e-157 557.8 470 63.4
Lj2g0017302 Lotus japonicus HOM05D006261 ORTHO05D007979 8.1e-157 557.8 472 64.4
MBI02_g21208_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 1.1e-156 557.4 490 61.8
Eucgr.I01173 Eucalyptus grandis HOM05D006261 ORTHO05D007979 1.8e-156 556.6 472 62.9
PSO541G6069 Papaver somniferum HOM05D006261 ORTHO05D007979 1.8e-156 556.6 474 63.5
Ca_12470_v3 Cicer arietinum L. HOM05D006261 ORTHO05D007979 3.1e-156 555.8 467 63.8
Sabra04G0095700 Salix brachista HOM05D006261 ORTHO05D007979 5.3e-156 555.1 481 62.8
Sopen11g020360 Solanum pennellii HOM05D006261 ORTHO05D007979 2.0e-155 553.1 472 62.5
Psat6g096640 Pisum sativum HOM05D006261 ORTHO05D007979 4.4e-155 552.0 474 63.7
Medtr1g034000 Medicago truncatula HOM05D006261 ORTHO05D007979 1.3e-154 550.4 477 63.7
Cc02_g18510 Coffea canephora HOM05D006261 ORTHO05D007979 6.4e-154 548.1 474 62.9
SGA_v2.0_scaffold58G20611 Striga asiatica HOM05D006261 ORTHO05D007979 1.6e-152 543.5 471 62.6
Nitab4.5_0000736g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 3.5e-152 542.3 475 62.3
Glyma.07G178400 Glycine max HOM05D006261 ORTHO05D007979 1.3e-151 540.4 471 63.1
TPR.G11138 Trifolium pratense HOM05D006261 ORTHO05D007979 1.3e-151 540.4 467 63.4
arahy.Tifrunner.gnm1.ann1.WU5QTE Arachis hypogaea HOM05D006261 ORTHO05D007979 3.0e-151 539.3 473 63.4
arahy.Tifrunner.gnm1.ann1.97F800 Arachis hypogaea HOM05D006261 ORTHO05D007979 5.1e-151 538.5 473 63.0
HanXRQChr16g0508741 Helianthus annuus HOM05D006261 ORTHO05D007979 1.9e-150 536.6 474 62.7
Lsat_1_v5_gn_7_87821 Lactuca sativa HOM05D006261 ORTHO05D007979 5.6e-150 535.0 474 62.9
Migut.B00311 Erythranthe guttata HOM05D006261 ORTHO05D007979 7.3e-150 534.6 471 61.4
ClCG02G005750 Citrullus lanatus HOM05D006261 ORTHO05D007979 2.4e-148 529.6 470 60.9
THA.LOC104807349 Tarenaya hassleriana HOM05D006261 ORTHO05D007979 2.6e-147 526.2 465 60.6
EL10Ac9g21824 Beta vulgaris HOM05D006261 ORTHO05D007979 7.6e-147 524.6 487 59.3
AUR62011430 Chenopodium quinoa HOM05D006261 ORTHO05D007979 7.6e-147 524.6 479 60.8
VMungo1215G1075 Vigna mungo HOM05D006261 ORTHO05D007979 1.3e-146 523.9 470 61.9
SalBow6G7179 Salvia bowleyana HOM05D006261 ORTHO05D007979 4.9e-146 521.9 471 60.3
Phvul.003G012500 Phaseolus vulgaris HOM05D006261 ORTHO05D007979 2.4e-145 519.6 473 61.3
Thhalv10025131m.g Eutrema salsugineum HOM05D006261 ORTHO05D007979 1.8e-143 513.5 465 57.8
AUR62016631 Chenopodium quinoa HOM05D006261 ORTHO05D007979 5.1e-143 511.9 495 58.4
Peaxi162Scf00684g00565 Petunia axillaris HOM05D006261 ORTHO05D007979 1.1e-142 510.8 424 65.6
Gohir.D01G006100 Gossypium hirsutum HOM05D006261 ORTHO05D007979 2.5e-142 509.6 472 59.3
AT4G33945 Arabidopsis thaliana HOM05D006261 ORTHO05D007979 1.6e-141 506.9 468 57.9
Aa31LG2G16340 Aethionema arabicum HOM05D006261 ORTHO05D007979 4.8e-141 505.4 465 57.6
C01p04840 Brassica napus HOM05D006261 ORTHO05D007979 8.1e-141 504.6 465 57.6
Oeu007256.2 Olea europaea HOM05D006261 ORTHO05D007979 8.1e-141 504.6 429 63.6
Sc08g0000100 Simmondsia chinensis HOM05D006261 ORTHO05D007979 3.1e-140 502.7 432 63.0
BolC1t00468H Brassica oleracea HOM05D006261 ORTHO05D007979 5.3e-140 501.9 465 57.0
Carub.0007s0647 Capsella rubella HOM05D006261 ORTHO05D007979 1.2e-139 500.7 468 57.3
Sp7g31680 Schrenkiella parvula HOM05D006261 ORTHO05D007979 1.5e-139 500.4 465 56.6
A01p04450 Brassica napus HOM05D006261 ORTHO05D007979 2.0e-139 500.0 465 57.2
AL7G17470 Arabidopsis lyrata HOM05D006261 ORTHO05D007979 2.6e-139 499.6 465 56.8
unitig_21.g20756 Utricularia gibba HOM05D006261 ORTHO05D007979 5.8e-139 498.4 473 57.7
BraA01t00432Z Brassica rapa HOM05D006261 ORTHO05D007979 3.8e-138 495.7 465 57.0
FAN24G3480 Fragaria x ananassa HOM05D006261 ORTHO05D007979 2.7e-136 489.6 435 61.8
ATR0097G005 Amborella trichopoda HOM05D006261 ORTHO05D007979 3.0e-135 486.1 488 55.7
Duzib052G0221 Durio zibethinus HOM05D006261 ORTHO05D007979 6.7e-135 485.0 471 56.9
ECA236G1018 Erigeron canadensis HOM05D006261 ORTHO05D001911 7.2e-129 464.9 378 64.6
Ah.01g020100 Amaranthus hybridus HOM05D006261 ORTHO05D007979 3.5e-128 462.6 481 54.9
Zm00001eb255680 Zea mays HOM05D006261 ORTHO05D007979 3.5e-128 462.6 491 52.3
Dinv23589 Davidia involucrata HOM05D006261 ORTHO05D007979 9.7e-126 454.5 336 73.2
Sed0027300 Sechium edule HOM05D006261 ORTHO05D007979 9.0e-124 448.0 378 63.2
HPP92_004238 Vanilla planifolia HOM05D006261 ORTHO05D007979 1.3e-122 444.1 472 51.1
HPP92_004260 Vanilla planifolia HOM05D006261 ORTHO05D007979 1.4e-121 440.7 472 51.1
MSTRG.16765 Avicennia marina HOM05D006261 ORTHO05D007979 7.4e-118 428.3 471 53.1
FvH4_2g06790 Fragaria vesca HOM05D006261 ORTHO05D007979 3.7e-117 426.0 373 62.2
Cpa.g.sc62.43 Carica papaya HOM05D006261 ORTHO05D007979 1.4e-116 424.1 322 71.1
Os02g0761200 Oryza sativa ssp. japonica HOM05D006261 ORTHO05D007979 1.6e-112 410.6 464 48.3
SEGI_22642 Sequoiadendron giganteum HOM05D006261 ORTHO05D007979 3.9e-111 406.0 486 46.1
PGR142G4090 Punica granatum HOM05D006261 ORTHO05D007979 1.8e-103 380.6 327 64.2
CDE10G1007 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 1.9e-97 360.5 515 44.7
CAN.G406.2 Capsicum annuum HOM05D006261 ORTHO05D007979 7.2e-97 358.6 338 58.6
Nitab4.5_0002141g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 8.0e-96 355.1 358 56.7
DCAR_000243 Daucus carota HOM05D006261 ORTHO05D007979 3.8e-90 336.3 333 57.4
SHI05382 Sapria himalayana HOM05D006261 ORTHO05D007979 1.2e-86 324.7 364 51.9
Haze_01888 Corylus avellana HOM05D006261 ORTHO05D007979 1.1e-81 308.1 306 56.5
CDE10G0955 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 3.2e-76 290.0 353 48.2
CARHR242070 Cardamine hirsuta HOM05D006261 ORTHO05D007979 4.6e-75 286.2 224 66.1
Mapoly0088s0010 Marchantia polymorpha HOM05D006261 ORTHO05D007979 3.0e-74 283.5 492 35.4
BcaB03g11867 Brassica carinata HOM05D006261 ORTHO05D007979 1.9e-68 264.2 270 56.7
SMO116G0201 Selaginella moellendorffii HOM05D006261 ORTHO05D007979 1.1e-65 255.0 439 37.8
RcHm_v2.0_Chr6g0252951 Rosa chinensis HOM05D006261 ORTHO05D007979 5.2e-55 219.5 356 40.4
Pp3c15_12310 Physcomitrium patens HOM05D006261 ORTHO05D007979 2.4e-52 210.7 499 30.7
MBI02_g32602_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 1.2e-48 198.4 160 63.8
Glyma.20G009900 Glycine max HOM05D006261 ORTHO05D007979 2.1e-43 181.0 202 52.5
MCO13G090 Micromonas commoda HOM05D006261 ORTHO05D007979 3.1e-39 167.2 499 30.1
Dinv42128 Davidia involucrata HOM05D006261 ORTHO05D007979 2.1e-35 154.5 377 37.4
MBI15_g16863_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 4.0e-31 140.2 126 61.1
CAN.G406.3 Capsicum annuum HOM05D006261 ORTHO05D007979 6.0e-27 126.3 135 54.1
Cre07.g343850 Chlamydomonas reinhardtii HOM05D006261 ORTHO05D007979 7.9e-27 125.9 512 26.2
DCAR_022063 Daucus carota HOM05D006261 ORTHO05D007979 1.9e-25 121.3 85 70.6
PRCOL_00000949 Prasinoderma coloniale HOM05D006261 ORTHO05D007979 2.9e-21 107.5 409 24.2
SHI05383 Sapria himalayana HOM05D006261 ORTHO05D007979 3.0e-18 97.4 100 52.0
CAN.G93.11 Capsicum annuum HOM05D006261 ORTHO05D007979 5.7e-17 93.2 102 52.9
BcaB01g01387 Brassica carinata HOM05D006261 ORTHO05D007979 1.6e-16 91.7 86 54.7
BcaB01g01385 Brassica carinata HOM05D006261 ORTHO05D007979 2.8e-16 90.9 86 55.8
BcaB06g27277 Brassica carinata HOM05D006261 ORTHO05D007979 6.3e-16 89.7 87 56.3
Lj1g0009361 Lotus japonicus HOM05D041574 ORTHO05D236155 8.7e-10 69.3 88 46.6
Lj5g0023620 Lotus japonicus HOM05D041574 ORTHO05D236101 4.3e-09 67.0 88 45.5
CBR_g53672 Chara braunii HOM05D000019 ORTHO05D000353 5.3e-07 60.1 66 45.5


User provided reference genes

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