Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.5e-74 282.0 137 100.0
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 7.9e-68 260.4 147 89.1
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.5e-58 229.6 161 73.9
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 2.1e-57 225.7 160 71.9
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 2.0e-55 219.2 159 71.1
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 4.9e-54 214.5 160 69.4
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 4.9e-54 214.5 160 69.4
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 2.7e-52 208.8 159 69.2
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 3.3e-50 201.8 161 65.2
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 3.3e-50 201.8 161 65.2
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.3e-49 199.9 164 64.6
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 6.3e-49 197.6 156 67.3
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 6.9e-48 194.1 166 62.0
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 9.0e-48 193.7 166 63.3
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 2.0e-47 192.6 163 62.6
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 1.7e-46 189.5 163 63.2
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.9e-46 188.7 162 64.2
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 1.9e-45 186.0 160 65.0
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 7.2e-45 184.1 167 60.5
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 1.6e-44 183.0 162 61.1
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 1.6e-44 183.0 162 61.1
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.1e-44 182.6 160 61.9
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 2.1e-44 182.6 160 61.9
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 6.1e-44 181.0 156 62.8
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 7.9e-44 180.6 164 61.6
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 1.4e-43 179.9 161 60.9
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 1.8e-43 179.5 166 59.0
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.3e-43 179.1 154 62.3
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 3.0e-43 178.7 179 55.9
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 3.9e-43 178.3 160 60.6
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 5.1e-43 177.9 162 58.6
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 8.8e-43 177.2 177 55.9
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 8.8e-43 177.2 125 71.2
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 5.7e-42 174.5 160 60.6
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 5.7e-42 174.5 165 58.2
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 5.7e-42 174.5 161 58.4
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 1.3e-41 173.3 153 62.1
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 1.3e-41 173.3 165 55.8
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 2.2e-41 172.6 158 58.2
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 2.8e-41 172.2 162 56.2
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 8.2e-41 170.6 144 63.2
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 8.2e-41 170.6 162 58.0
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 1.1e-40 170.2 161 59.0
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.8e-40 169.5 160 58.1
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 3.1e-40 168.7 116 74.1
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 4.1e-40 168.3 167 58.1
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 5.3e-40 167.9 133 66.2
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 6.9e-40 167.5 139 62.6
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 1.2e-39 166.8 162 54.9
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 2.6e-39 165.6 156 58.3
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 4.5e-39 164.9 154 60.4
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 5.9e-39 164.5 161 57.8
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 1.3e-38 163.3 159 56.6
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 1.7e-38 162.9 133 63.9
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 2.2e-38 162.5 164 56.1
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 3.8e-38 161.8 133 64.7
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 5.0e-38 161.4 159 57.9
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 8.5e-38 160.6 151 58.3
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 1.4e-37 159.8 156 59.0
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 1.4e-37 159.8 155 57.4
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.4e-37 159.8 154 57.8
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 1.9e-37 159.5 164 54.3
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 1.9e-37 159.5 147 59.2
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 2.5e-37 159.1 145 62.8
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 2.5e-37 159.1 160 56.2
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 4.2e-37 158.3 165 53.3
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 4.2e-37 158.3 165 53.3
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 4.2e-37 158.3 164 53.7
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 5.5e-37 157.9 159 55.3
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 5.5e-37 157.9 162 56.8
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 5.5e-37 157.9 147 59.9
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 7.2e-37 157.5 159 54.7
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 9.4e-37 157.1 115 69.6
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 1.2e-36 156.8 157 56.7
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 1.6e-36 156.4 166 53.0
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 2.1e-36 156.0 160 56.9
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 2.1e-36 156.0 116 69.0
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 2.7e-36 155.6 152 57.2
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 2.7e-36 155.6 162 55.6
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.7e-36 155.6 152 57.9
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 3.6e-36 155.2 151 53.6
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 4.7e-36 154.8 144 61.8
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 6.1e-36 154.5 165 52.7
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 6.1e-36 154.5 139 61.9
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 6.1e-36 154.5 139 61.9
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 6.1e-36 154.5 139 61.9
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 6.1e-36 154.5 137 63.5
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 6.1e-36 154.5 159 57.9
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 7.9e-36 154.1 165 50.9
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.0e-35 153.7 157 54.1
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 1.4e-35 153.3 157 54.8
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.4e-35 153.3 152 57.9
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 1.8e-35 152.9 162 54.3
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 1.8e-35 152.9 149 55.0
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 1.8e-35 152.9 162 51.9
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 2.3e-35 152.5 149 56.4
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 3.0e-35 152.1 160 54.4
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 3.0e-35 152.1 156 54.5
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 3.9e-35 151.8 156 54.5
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 5.1e-35 151.4 162 53.1
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 5.1e-35 151.4 139 61.2
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 6.7e-35 151.0 149 57.0
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 6.7e-35 151.0 162 52.5
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 6.7e-35 151.0 146 58.9
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 1.1e-34 150.2 158 53.8
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 1.1e-34 150.2 148 56.8
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 2.0e-34 149.4 161 50.9
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 2.0e-34 149.4 162 51.9
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 2.6e-34 149.1 149 56.4
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 4.4e-34 148.3 146 56.2
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 4.4e-34 148.3 160 51.2
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 5.7e-34 147.9 160 51.2
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 1.3e-33 146.7 153 53.6
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 1.3e-33 146.7 153 53.6
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 2.2e-33 146.0 155 52.3
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 2.8e-33 145.6 146 55.5
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 2.8e-33 145.6 108 69.4
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 4.8e-33 144.8 109 67.9
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 8.2e-33 144.1 149 55.0
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 1.8e-32 142.9 149 53.0
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 3.1e-32 142.1 141 53.9
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 4.1e-32 141.7 133 57.1
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 4.1e-32 141.7 138 60.1
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 5.3e-32 141.4 109 68.8
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 5.9e-31 137.9 151 53.0
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 5.9e-31 137.9 136 57.4
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.3e-30 136.7 145 52.4
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 3.8e-30 135.2 156 50.0
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 5.0e-30 134.8 211 38.4
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 6.5e-30 134.4 160 48.1
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 1.1e-29 133.7 140 52.9
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 1.9e-29 132.9 145 54.5
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 3.9e-27 125.2 151 45.0
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 6.7e-27 124.4 140 46.4
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.5e-26 123.2 146 47.9
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 2.6e-26 122.5 132 51.5
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 7.4e-26 120.9 152 44.7
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 2.8e-25 119.0 124 51.6
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 8.2e-25 117.5 147 44.9
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 1.1e-24 117.1 110 55.5
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 2.4e-24 115.9 128 48.4
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 3.1e-24 115.5 140 48.6
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 5.9e-23 111.3 118 54.2
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 1.0e-22 110.5 128 50.0
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 1.3e-22 110.2 110 53.6
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 3.8e-22 108.6 110 53.6
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 9.4e-21 104.0 77 68.8
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 3.6e-20 102.1 118 48.3
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 3.6e-20 102.1 131 52.7
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 1.0e-19 100.5 105 51.4
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 1.5e-13 80.1 106 40.6
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 4.2e-13 78.6 145 38.6
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 4.2e-13 78.6 77 55.8
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 9.1e-08 60.8 43 67.4


User provided reference genes

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