Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.4e-59 232.6 113 100.0
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 2.0e-53 212.2 109 91.7
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 7.7e-53 210.3 109 92.7
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 2.2e-52 208.8 109 90.8
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 6.5e-52 207.2 109 89.0
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 1.5e-51 206.1 109 89.9
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 1.9e-51 205.7 109 89.9
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 2.5e-51 205.3 109 89.9
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 1.2e-50 203.0 113 83.2
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 1.2e-50 203.0 109 89.0
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 1.2e-50 203.0 109 89.0
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 1.2e-50 203.0 109 89.0
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 1.6e-50 202.6 109 89.0
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 2.7e-50 201.8 109 87.2
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 3.6e-50 201.4 109 89.0
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 4.7e-50 201.1 109 87.2
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 6.1e-50 200.7 109 85.3
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 6.1e-50 200.7 109 85.3
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 1.4e-49 199.5 106 88.7
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 1.4e-49 199.5 109 86.2
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 1.8e-49 199.1 109 84.4
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 2.3e-49 198.7 109 86.2
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 3.0e-49 198.4 109 86.2
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 5.2e-49 197.6 108 82.4
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 1.5e-48 196.1 108 82.4
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 2.0e-48 195.7 109 85.3
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 4.4e-48 194.5 107 86.0
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 1.7e-47 192.6 109 82.6
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 2.8e-47 191.8 110 80.9
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 4.8e-47 191.0 109 83.5
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 8.2e-47 190.3 109 79.8
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 1.1e-46 189.9 109 80.7
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 1.4e-46 189.5 109 80.7
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 1.8e-46 189.1 109 78.9
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 1.8e-46 189.1 108 76.9
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 2.4e-46 188.7 107 80.4
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 2.4e-46 188.7 109 79.8
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 2.4e-46 188.7 109 81.7
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 3.1e-46 188.3 108 78.7
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 4.1e-46 188.0 108 79.6
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 4.1e-46 188.0 108 79.6
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 4.1e-46 188.0 108 78.7
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 7.0e-46 187.2 109 78.0
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 7.0e-46 187.2 109 78.0
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 7.0e-46 187.2 109 78.0
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 7.0e-46 187.2 109 80.7
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 9.1e-46 186.8 108 75.9
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 9.1e-46 186.8 109 79.8
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 1.2e-45 186.4 108 78.7
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 1.2e-45 186.4 109 78.0
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 1.6e-45 186.0 109 77.1
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 2.7e-45 185.3 109 77.1
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 2.7e-45 185.3 109 77.1
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 2.7e-45 185.3 109 78.0
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 2.7e-45 185.3 109 77.1
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 2.7e-45 185.3 109 78.9
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 3.5e-45 184.9 109 78.0
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 4.5e-45 184.5 108 75.0
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 4.5e-45 184.5 108 79.6
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 4.5e-45 184.5 108 78.7
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 4.5e-45 184.5 109 79.8
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 5.9e-45 184.1 108 76.9
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 7.7e-45 183.7 109 77.1
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 7.7e-45 183.7 164 60.4
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 1.0e-44 183.3 108 75.0
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 1.0e-44 183.3 109 78.0
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 1.3e-44 183.0 108 78.7
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 1.3e-44 183.0 108 78.7
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 2.2e-44 182.2 109 76.1
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 2.2e-44 182.2 109 75.2
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 2.2e-44 182.2 108 77.8
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 2.9e-44 181.8 109 78.0
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 3.8e-44 181.4 108 75.9
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 5.0e-44 181.0 108 75.9
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 5.0e-44 181.0 108 75.0
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 5.0e-44 181.0 108 76.9
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 6.5e-44 180.6 109 75.2
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 6.5e-44 180.6 108 78.7
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 1.5e-43 179.5 108 75.9
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 1.9e-43 179.1 109 74.3
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 1.9e-43 179.1 113 77.0
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 2.5e-43 178.7 109 76.1
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 2.5e-43 178.7 108 75.0
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 2.5e-43 178.7 108 75.0
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 2.5e-43 178.7 108 75.0
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 2.5e-43 178.7 108 72.2
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 3.2e-43 178.3 107 77.6
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 3.2e-43 178.3 108 75.9
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 4.2e-43 177.9 110 74.5
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 5.5e-43 177.6 108 75.0
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 5.5e-43 177.6 107 75.7
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 7.2e-43 177.2 107 73.8
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 2.7e-42 175.3 108 72.2
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 2.7e-42 175.3 107 73.8
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 6.1e-42 174.1 110 73.6
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 6.1e-42 174.1 108 77.8
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 8.0e-42 173.7 108 73.1
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 8.0e-42 173.7 108 73.1
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.0e-41 173.3 109 72.5
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.0e-41 173.3 109 72.5
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 1.0e-41 173.3 108 72.2
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 1.0e-41 173.3 162 58.0
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 1.8e-41 172.6 109 78.0
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 2.3e-41 172.2 108 71.3
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 3.0e-41 171.8 108 75.9
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 3.0e-41 171.8 111 74.8
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 8.8e-41 170.2 108 70.4
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 8.8e-41 170.2 107 72.0
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 8.8e-41 170.2 107 72.0
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 8.8e-41 170.2 107 72.0
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 8.8e-41 170.2 107 72.0
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 5.7e-40 167.5 93 86.0
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 1.7e-39 166.0 110 76.4
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 1.4e-38 162.9 107 68.2
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 5.9e-37 157.5 107 62.6
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.0e-36 156.8 131 58.8
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 1.9e-35 152.5 109 67.9
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 5.5e-35 151.0 85 78.8
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 6.1e-34 147.5 110 60.0
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 1.5e-32 142.9 92 71.7
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 6.3e-31 137.5 109 63.3
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 3.3e-27 125.2 71 80.3
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 8.0e-26 120.6 99 56.6
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 8.9e-25 117.1 83 65.1
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 1.8e-22 109.4 59 84.7
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 4.6e-21 104.8 58 81.0
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 1.7e-20 102.8 56 80.4
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 4.7e-18 94.7 83 54.2
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 3.4e-16 88.6 97 42.3
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 1.4e-14 83.2 91 42.9
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 2.4e-14 82.4 89 39.3
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 2.1e-10 69.3 41 70.7
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 1.4e-09 66.6 52 59.6
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 1.8e-09 66.2 56 60.7
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 8.9e-09 63.9 54 59.3


User provided reference genes

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