Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 8.0e-233 810.1 413 100.0
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 3.1e-232 808.1 413 99.8
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 2.2e-190 669.1 414 83.3
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 4.9e-182 641.3 416 79.1
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 1.5e-178 629.8 413 80.1
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 5.0e-174 614.8 414 75.4
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 2.7e-172 609.0 413 74.3
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 9.7e-170 600.5 415 75.2
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 6.9e-168 594.3 415 74.2
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 1.0e-166 590.5 399 75.9
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 8.5e-166 587.4 480 66.7
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 8.5e-166 587.4 411 74.0
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 1.4e-165 586.6 413 71.9
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 1.9e-165 586.3 416 72.8
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 7.2e-165 584.3 419 73.7
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 7.2e-165 584.3 406 74.1
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 2.5e-162 575.9 421 70.3
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 2.5e-162 575.9 411 73.0
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 5.7e-162 574.7 417 73.4
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 7.4e-162 574.3 416 72.8
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 3.7e-161 572.0 419 69.2
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 4.8e-161 571.6 419 69.0
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 4.8e-161 571.6 411 72.7
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 4.8e-161 571.6 410 72.9
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 8.2e-161 570.9 406 72.9
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 8.2e-161 570.9 418 69.1
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.1e-160 570.5 419 68.7
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 1.1e-160 570.5 332 84.6
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 4.1e-160 568.5 419 71.6
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 9.1e-160 567.4 418 70.8
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 9.1e-160 567.4 409 71.9
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.5e-159 566.6 419 68.5
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.5e-159 566.6 418 68.9
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 1.0e-158 563.9 418 72.2
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 1.3e-158 563.5 418 72.5
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.7e-158 563.1 418 68.2
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 1.7e-158 563.1 417 71.2
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 3.8e-158 562.0 415 71.1
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 1.9e-157 559.7 353 79.3
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 1.9e-157 559.7 423 70.2
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 5.5e-157 558.1 413 70.9
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 1.6e-156 556.6 417 70.0
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 7.9e-156 554.3 417 71.0
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 1.8e-155 553.1 419 68.7
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 5.1e-155 551.6 415 68.4
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 8.8e-155 550.8 397 71.5
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 5.7e-154 548.1 402 70.9
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 5.7e-154 548.1 416 70.7
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 1.7e-153 546.6 404 71.5
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 2.8e-153 545.8 399 72.9
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 8.2e-153 544.3 371 72.8
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 1.1e-152 543.9 408 67.9
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 1.4e-152 543.5 384 71.4
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 1.8e-152 543.1 417 68.8
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 7.0e-152 541.2 412 69.7
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 3.5e-151 538.9 394 70.8
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 5.9e-151 538.1 410 66.3
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 7.7e-151 537.7 421 67.5
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 6.5e-150 534.6 415 68.9
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 9.4e-149 530.8 397 72.0
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 1.6e-148 530.0 421 67.7
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 1.6e-148 530.0 392 70.4
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 2.1e-148 529.6 387 69.8
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 1.4e-147 526.9 414 68.6
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 2.3e-147 526.2 411 65.7
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 6.7e-147 524.6 331 79.5
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 1.1e-146 523.9 412 66.3
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 1.5e-146 523.5 417 64.5
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 2.6e-146 522.7 403 66.7
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 3.3e-146 522.3 411 66.9
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 7.5e-146 521.2 367 71.1
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 7.5e-146 521.2 367 71.1
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 9.7e-146 520.8 409 65.5
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 9.7e-146 520.8 403 66.3
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 1.3e-145 520.4 420 65.7
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 1.7e-145 520.0 366 69.7
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 2.2e-145 519.6 409 66.5
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 2.2e-145 519.6 408 65.7
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 6.3e-145 518.1 385 69.4
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 2.4e-144 516.2 418 66.5
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 4.1e-144 515.4 412 64.8
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 5.3e-144 515.0 419 64.2
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 5.3e-144 515.0 358 69.8
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 1.2e-143 513.8 403 66.0
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 1.2e-143 513.8 419 64.2
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 1.2e-143 513.8 408 66.4
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 3.5e-143 512.3 408 66.2
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 4.5e-143 511.9 416 63.9
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 1.0e-142 510.8 407 66.3
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 2.9e-142 509.2 422 62.8
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 6.5e-142 508.1 409 62.3
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 3.4e-138 495.7 332 75.9
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 1.3e-137 493.8 403 64.0
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 1.3e-137 493.8 404 63.9
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 1.7e-137 493.4 366 68.3
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 2.2e-137 493.0 403 63.8
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 8.3e-137 491.1 403 64.3
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 8.3e-137 491.1 403 63.5
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 3.1e-136 489.2 333 72.7
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 4.1e-136 488.8 335 72.2
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 5.4e-136 488.4 405 64.0
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 5.4e-136 488.4 403 63.8
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 5.4e-136 488.4 404 63.9
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 2.0e-135 486.5 404 63.4
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 3.5e-135 485.7 404 64.6
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 1.7e-134 483.4 409 61.6
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 2.9e-134 482.6 409 63.6
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 8.5e-134 481.1 405 63.0
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 1.1e-125 454.1 304 73.0
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 3.3e-125 452.6 318 71.4
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 3.7e-121 439.1 292 76.7
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 3.7e-121 439.1 413 58.6
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 3.7e-121 439.1 426 59.6
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 2.4e-120 436.4 383 61.4
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 2.0e-119 433.3 352 64.5
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 4.6e-119 432.2 358 62.6
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.0e-115 421.0 392 57.4
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 1.5e-114 417.2 432 54.6
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 5.8e-114 415.2 411 59.6
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.2e-113 413.3 331 62.5
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.1e-107 394.4 343 57.4
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.8e-107 393.7 337 58.2
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 2.6e-106 389.8 344 55.8
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 1.1e-96 357.8 282 68.1
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 1.9e-96 357.1 314 56.1
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 5.4e-88 328.9 285 61.1
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 3.4e-82 309.7 333 52.3
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 2.8e-76 290.0 320 45.0
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 4.0e-75 286.2 332 42.5
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.2e-74 284.6 253 61.3
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 2.4e-72 276.9 312 45.5
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.4e-69 265.4 310 44.5
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.8e-67 260.8 292 45.2
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.0e-66 257.3 282 44.7
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 2.2e-65 253.8 227 62.1
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.5e-64 250.4 179 68.7
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.2e-64 250.0 294 43.2
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.2e-64 249.6 283 43.5
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 7.1e-64 248.8 270 52.6
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.1e-63 247.3 301 40.5
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 1.0e-62 245.0 341 38.1
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 5.1e-62 242.7 149 82.6
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.1e-60 237.3 288 42.0
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 8.5e-57 225.3 267 41.6
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 3.0e-54 216.9 200 61.0
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 4.8e-52 209.5 344 36.6
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.5e-48 197.2 164 62.2
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 6.1e-47 192.6 140 72.1
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 3.9e-46 189.9 153 56.2
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.1e-43 179.9 306 32.4
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 1.5e-42 177.9 145 61.4
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.6e-42 177.2 312 34.9
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.2e-41 174.1 364 33.2
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 8.5e-41 172.2 218 41.7
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 8.5e-41 172.2 314 34.7
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.0e-38 163.7 340 32.1
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.7e-37 159.5 327 29.1
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.2e-36 157.5 309 28.8
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.5e-32 144.8 292 32.2
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.3e-30 137.5 266 31.6
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 5.2e-30 136.3 99 71.7
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 3.7e-28 130.2 119 52.1
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 7.0e-27 125.9 77 80.5
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.5e-26 123.6 103 53.4
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.0e-25 119.8 218 30.7
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 8.5e-25 119.0 293 27.0
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 8.5e-25 119.0 76 73.7
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 7.2e-24 115.9 295 29.8
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 9.4e-24 115.5 186 34.9
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 2.7e-23 114.0 349 26.6
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.8e-22 111.3 317 29.7
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.8e-22 111.3 321 29.6
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.1e-19 102.1 311 28.6
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 4.1e-19 100.1 298 26.5
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 3.8e-17 93.6 351 24.5
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 7.5e-13 79.3 61 65.6
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.0e-09 68.9 143 32.2
Pp3c20_3390 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.3e-08 63.9 92 44.6


User provided reference genes

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