Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049607 Camellia sinensis var. sinensis HOM05D008235 ORTHO05D009358 2.8e-296 1021.1 505 100.0
CSS0022265 Camellia sinensis var. sinensis HOM05D008235 ORTHO05D009358 4.3e-289 997.3 503 98.0
Actinidia35979 Actinidia chinensis HOM05D008235 ORTHO05D009358 1.3e-123 447.6 499 52.5
Actinidia34601 Actinidia chinensis HOM05D008235 ORTHO05D009358 1.6e-118 430.6 507 52.9
Dinv22732 Davidia involucrata HOM05D008235 ORTHO05D009358 1.3e-107 394.4 513 47.6
RhsimUnG0195000 Rhododendron simsii HOM05D008235 ORTHO05D009358 2.9e-99 366.7 490 49.0
Rhsim09G0027400 Rhododendron simsii HOM05D008235 ORTHO05D009358 1.5e-92 344.4 537 44.7
Dinv44188 Davidia involucrata HOM05D008235 ORTHO05D009358 3.8e-83 313.2 453 45.3
vmacro00622 Vaccinium macrocarpon HOM05D008235 ORTHO05D009358 9.3e-82 308.5 392 51.0
Haze_01504 Corylus avellana HOM05D008235 ORTHO05D009358 1.3e-64 251.5 479 36.7
GSVIVG01010760001 Vitis vinifera HOM05D008235 ORTHO05D009358 5.3e-61 239.6 521 34.7
QL10p049494 Quercus lobata HOM05D008235 ORTHO05D009358 5.0e-59 233.0 528 35.4
TAR365G0029 Trochodendron aralioides HOM05D008235 ORTHO05D009358 6.3e-54 216.1 474 35.7
Potri.017G029800 Populus trichocarpa HOM05D008235 ORTHO05D009358 6.9e-53 212.6 518 33.0
Potri.007G128500 Populus trichocarpa HOM05D008235 ORTHO05D009358 1.5e-52 211.5 522 33.3
Duzib212G0859 Durio zibethinus HOM05D008235 ORTHO05D009358 6.1e-49 199.5 536 32.8
Sabra17G0019200 Salix brachista HOM05D008235 ORTHO05D009358 1.8e-48 198.0 518 32.2
Sabra07G0105000 Salix brachista HOM05D008235 ORTHO05D009358 7.4e-47 192.6 503 32.2
Nn1g09629 Nelumbo nucifera HOM05D008235 ORTHO05D009358 1.3e-46 191.8 571 32.6
Thecc.04G179500 Theobroma cacao HOM05D008235 ORTHO05D009358 2.8e-46 190.7 536 31.9
TAR636G0036 Trochodendron aralioides HOM05D008235 ORTHO05D009358 1.1e-45 188.7 478 31.6
Ciclev10019428m.g Citrus clementina HOM05D008235 ORTHO05D009358 5.2e-40 169.9 522 31.4
Gorai.005G128900 Gossypium raimondii HOM05D008235 ORTHO05D009358 7.4e-39 166.0 528 29.5
Gohir.D02G114100 Gossypium hirsutum HOM05D008235 ORTHO05D009358 9.7e-39 165.6 534 29.8
Duzib268G0443 Durio zibethinus HOM05D008235 ORTHO05D009358 4.8e-38 163.3 398 32.9
CANSAT78G2326 Cannabis sativa HOM05D008235 ORTHO05D009358 8.2e-38 162.5 391 33.8
Gorai.011G142400 Gossypium raimondii HOM05D008235 ORTHO05D009358 1.1e-37 162.2 523 29.3
CiPaw.01G099800 Carya illinoinensis HOM05D008235 ORTHO05D009358 1.8e-37 161.4 370 35.4
Gohir.A10G137600 Gossypium hirsutum HOM05D008235 ORTHO05D009358 3.8e-35 153.7 500 29.6
MD04G1040900 Malus domestica HOM05D008235 ORTHO05D009358 1.1e-34 152.1 396 32.3
Manes.04G042909 Manihot esculenta HOM05D008235 ORTHO05D009358 3.6e-33 147.1 526 28.1
Manes.11G121000 Manihot esculenta HOM05D008235 ORTHO05D009358 5.2e-32 143.3 531 27.1
CAN.G112.20 Capsicum annuum HOM05D014650 ORTHO05D022197 1.7e-30 138.3 514 29.0
COL.COLO4_07668 Corchorus olitorius HOM05D008235 ORTHO05D009358 2.2e-30 137.9 346 32.4
Solyc05g050740.3 Solanum lycopersicum HOM05D014650 ORTHO05D009358 4.5e-28 130.2 457 28.2
Gohir.D10G129000 Gossypium hirsutum HOM05D008235 ORTHO05D009358 2.2e-27 127.9 461 27.5
THA.LOC104800392 Tarenaya hassleriana HOM05D009929 ORTHO05D009358 1.9e-26 124.8 510 27.5
Sopen05g029150 Solanum pennellii HOM05D014650 ORTHO05D022197 7.2e-26 122.9 459 28.5
Gohir.A03G088800 Gossypium hirsutum HOM05D008235 ORTHO05D009358 1.0e-24 119.0 367 30.8
Nitab4.5_0011467g0040 Nicotiana tabacum HOM05D014650 ORTHO05D009358 1.8e-24 118.2 314 32.5
ClCG07G015680 Citrullus lanatus HOM05D008235 ORTHO05D009358 3.0e-24 117.5 288 31.6
Peaxi162Scf01052g00325 Petunia axillaris HOM05D014650 ORTHO05D009358 3.0e-24 117.5 532 25.9
Cpa.g.sc9.283 Carica papaya HOM05D008235 ORTHO05D009358 5.7e-23 113.2 517 27.1
Cc03_g12910 Coffea canephora HOM05D008235 ORTHO05D009358 1.3e-22 112.1 297 30.6
Phvul.011G054200 Phaseolus vulgaris HOM05D008235 ORTHO05D009358 1.7e-22 111.7 320 30.0
THA.LOC104803712 Tarenaya hassleriana HOM05D009929 ORTHO05D009358 2.8e-22 110.9 533 25.1
Glyma.12G052200 Glycine max HOM05D008235 ORTHO05D009358 4.1e-21 107.1 358 30.4
CsaV3_4G003430 Cucumis sativus L. HOM05D008235 ORTHO05D009358 5.4e-21 106.7 337 29.4
Sed0015774 Sechium edule HOM05D008235 ORTHO05D009358 7.0e-21 106.3 300 31.0
VMungo1127G1046 Vigna mungo HOM05D008235 ORTHO05D009358 1.2e-20 105.5 322 30.4
Nitab4.5_0002598g0040 Nicotiana tabacum HOM05D014650 ORTHO05D009358 1.6e-20 105.1 270 33.7
MELO3C017713.2 Cucumis melo HOM05D008235 ORTHO05D009358 2.0e-20 104.8 341 28.2
Lalb_Chr22g0352131 Lupinus albus HOM05D008235 ORTHO05D009358 2.0e-20 104.8 331 28.7
Oeu053824.1 Olea europaea HOM05D008235 ORTHO05D009358 2.3e-19 101.3 424 27.4
Glyma.11G127600 Glycine max HOM05D008235 ORTHO05D009358 3.8e-19 100.5 325 29.5
Glyma.13G344300 Glycine max HOM05D008235 ORTHO05D009358 4.2e-18 97.1 262 29.4
Lj3g0014084 Lotus japonicus HOM05D008235 ORTHO05D009358 2.8e-17 94.4 324 29.0
Aqoxy2G04121 Aquilegia oxysepala HOM05D008235 ORTHO05D009358 8.0e-17 92.8 517 25.0
arahy.Tifrunner.gnm1.ann1.TK6P88 Arachis hypogaea HOM05D008235 ORTHO05D009358 1.4e-16 92.0 329 29.8
arahy.Tifrunner.gnm1.ann1.V6VI7P Arachis hypogaea HOM05D008235 ORTHO05D009358 2.6e-15 87.8 329 28.9
Ca_20789_v3 Cicer arietinum L. HOM05D008235 ORTHO05D009358 3.4e-15 87.4 315 29.2
AL5G41340 Arabidopsis lyrata HOM05D009929 ORTHO05D009358 1.3e-14 85.5 519 23.9
AT3G59430 Arabidopsis thaliana HOM05D009929 ORTHO05D009358 1.8e-13 81.6 521 24.2
Sc13g0006760 Simmondsia chinensis HOM05D008235 ORTHO05D009358 5.4e-13 80.1 521 23.6
Ah.13g072860 Amaranthus hybridus HOM05D019141 ORTHO05D009358 7.0e-13 79.7 335 27.8
Eucgr.A00083 Eucalyptus grandis HOM05D008235 ORTHO05D009358 1.2e-12 79.0 309 26.9
AUR62002309 Chenopodium quinoa HOM05D019141 ORTHO05D009358 2.0e-12 78.2 480 24.6
Medtr4g067260 Medicago truncatula HOM05D008235 ORTHO05D009358 2.7e-12 77.8 351 28.5
Hund03161 Selenicereus undatus HOM05D019141 ORTHO05D009358 1.7e-11 75.1 255 31.4
EL10Ac3g05943 Beta vulgaris HOM05D019141 ORTHO05D009358 2.3e-11 74.7 506 24.7
Thhalv10005962m.g Eutrema salsugineum HOM05D009929 ORTHO05D009358 2.9e-11 74.3 456 26.1
Carub.0005s2617 Capsella rubella HOM05D009929 ORTHO05D009358 3.8e-11 73.9 534 25.1
CARHR169830 Cardamine hirsuta HOM05D009929 ORTHO05D009358 3.3e-10 70.9 516 23.1
A09p51710 Brassica napus HOM05D009929 ORTHO05D009358 4.3e-10 70.5 485 24.7
PSO675G1581 Papaver somniferum HOM05D066249 ORTHO05D009358 9.5e-10 69.3 313 27.2
BcaC07g40472 Brassica carinata HOM05D009929 ORTHO05D009358 6.1e-09 66.6 386 24.9
DCAR_023937 Daucus carota HOM05D008235 ORTHO05D009358 6.1e-09 66.6 125 33.6
PSO017G5357 Papaver somniferum HOM05D066249 ORTHO05D009358 6.1e-09 66.6 288 25.7
AUR62015381 Chenopodium quinoa HOM05D019141 ORTHO05D009358 8.0e-09 66.2 512 23.0
Lsat_1_v5_gn_3_115581 Lactuca sativa HOM05D040109 ORTHO05D009358 1.8e-08 65.1 147 29.3
HanXRQChr03g0091101 Helianthus annuus HOM05D040109 ORTHO05D009358 2.3e-08 64.7 143 30.1
Sp5g03710 Schrenkiella parvula HOM05D009929 ORTHO05D009358 4.0e-08 63.9 520 22.9
Aa31LG1G25120 Aethionema arabicum HOM05D009929 ORTHO05D006942 1.2e-07 62.4 451 23.9
BcaC07g40284 Brassica carinata HOM05D009929 ORTHO05D009358 1.2e-07 62.4 491 23.4
C08p34440 Brassica napus HOM05D009929 ORTHO05D009358 1.2e-07 62.4 491 23.4
BolC8t51045H Brassica oleracea HOM05D009929 ORTHO05D009358 1.2e-07 62.4 491 23.4
BraA09t40607Z Brassica rapa HOM05D009929 ORTHO05D009358 1.2e-07 62.4 482 23.2
Psat7g208600 Pisum sativum HOM05D008235 ORTHO05D009358 2.9e-06 57.8 82 37.8
PGSC0003DMG400007031 Solanum tuberosum HOM05D014650 ORTHO05D022197 8.3e-06 56.2 38 68.4


User provided reference genes

Program Settings