Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049604 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 1.4e-288 995.7 552 100.0
CSS0049336 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 2.3e-251 872.1 549 91.8
Dinv25461 Davidia involucrata HOM05D005890 ORTHO05D006717 2.3e-89 334.0 553 44.7
vmacro20806 Vaccinium macrocarpon HOM05D005890 ORTHO05D006717 1.2e-87 328.2 561 45.8
Dinv41195 Davidia involucrata HOM05D005890 ORTHO05D006717 1.1e-80 305.1 574 40.4
Rhsim01G0114500 Rhododendron simsii HOM05D005890 ORTHO05D006717 9.6e-56 222.2 548 39.1
Actinidia02494 Actinidia chinensis HOM05D005890 ORTHO05D006717 4.9e-52 209.9 547 35.5
Hma1.2p1_0235F.1_g098760 Hydrangea macrophylla HOM05D005890 ORTHO05D006717 7.1e-43 179.5 539 33.8
QL07p048247 Quercus lobata HOM05D005890 ORTHO05D006717 2.4e-38 164.5 539 31.4
Nn8g40670 Nelumbo nucifera HOM05D005890 ORTHO05D006717 1.9e-35 154.8 534 32.0
Potri.018G140200 Populus trichocarpa HOM05D005890 ORTHO05D006717 5.1e-33 146.7 512 32.8
GSVIVG01029286001 Vitis vinifera HOM05D005890 ORTHO05D006717 1.6e-31 141.7 546 30.6
Cc03_g15250 Coffea canephora HOM05D005890 ORTHO05D006717 3.7e-31 140.6 332 38.0
Prupe.1G073000 Prunus persica HOM05D005890 ORTHO05D006717 1.8e-30 138.3 211 44.1
CANSAT01G0113 Cannabis sativa HOM05D005890 ORTHO05D006717 4.5e-29 133.7 214 42.5
Peaxi162Scf00046g00417 Petunia axillaris HOM05D005890 ORTHO05D006717 1.0e-28 132.5 197 46.7
CAN.G403.1 Capsicum annuum HOM05D005890 ORTHO05D006717 4.9e-28 130.2 199 43.7
Sopen07g004220 Solanum pennellii HOM05D005890 ORTHO05D006717 3.2e-27 127.5 194 45.9
Solyc07g008330.3 Solanum lycopersicum HOM05D005890 ORTHO05D006717 4.2e-27 127.1 194 45.9
PGSC0003DMG400019897 Solanum tuberosum HOM05D005890 ORTHO05D006717 7.1e-27 126.3 194 45.4
MD16G1246300 Malus domestica HOM05D005890 ORTHO05D006717 1.2e-26 125.6 413 33.7
Ciclev10008727m.g Citrus clementina HOM05D005890 ORTHO05D006717 2.7e-26 124.4 263 38.8
Manes.06G017800 Manihot esculenta HOM05D005890 ORTHO05D006717 2.7e-26 124.4 225 41.3
MSTRG.26556 Avicennia marina HOM05D005890 ORTHO05D006717 6.7e-25 119.8 375 28.8
Atru.BG.17.p Acer truncatum HOM05D005890 ORTHO05D006717 1.5e-24 118.6 369 34.7
CiPaw.07G198700 Carya illinoinensis HOM05D005890 ORTHO05D006717 2.5e-24 117.9 229 41.9
Eucgr.C02214 Eucalyptus grandis HOM05D005890 ORTHO05D006717 2.5e-24 117.9 221 40.3
DCAR_018014 Daucus carota HOM05D005890 ORTHO05D006717 3.3e-24 117.5 417 32.6
Aqoxy7G02888 Aquilegia oxysepala HOM05D005890 ORTHO05D006717 4.3e-24 117.1 251 36.7
Atru.chr7.926 Acer truncatum HOM05D005890 ORTHO05D006717 9.7e-24 115.9 241 37.8
Cfa013466 Carpinus fangiana HOM05D005890 ORTHO05D006717 1.6e-23 115.2 188 42.6
ClCG06G013720 Citrullus lanatus HOM05D005890 ORTHO05D006717 4.8e-23 113.6 204 40.2
Glyma.17G058000 Glycine max HOM05D005890 ORTHO05D006717 4.8e-23 113.6 215 38.1
Haze_22044 Corylus avellana HOM05D005890 ORTHO05D006717 1.1e-22 112.5 183 42.1
SGA_v2.0_scaffold392G50652 Striga asiatica HOM05D005890 ORTHO05D006717 1.8e-22 111.7 380 29.2
SGA_v2.0_scaffold41G15805 Striga asiatica HOM05D005890 ORTHO05D006717 9.0e-22 109.4 242 37.2
Oeu063100.1 Olea europaea HOM05D005890 ORTHO05D006717 1.2e-21 109.0 201 39.8
Nitab4.5_0000028g0410 Nicotiana tabacum HOM05D005890 ORTHO05D006717 1.5e-21 108.6 203 40.4
Medtr4g127160 Medicago truncatula HOM05D005890 ORTHO05D006717 5.9e-21 106.7 209 39.7
Nitab4.5_0004916g0020 Nicotiana tabacum HOM05D005890 ORTHO05D006717 5.9e-21 106.7 191 40.3
Migut.L01872 Erythranthe guttata HOM05D005890 ORTHO05D006717 1.0e-20 105.9 227 37.0
arahy.Tifrunner.gnm1.ann1.CB00ZF Arachis hypogaea HOM05D005890 ORTHO05D006717 1.3e-20 105.5 174 40.2
Duzib170G1164 Durio zibethinus HOM05D005890 ORTHO05D006717 1.7e-20 105.1 467 30.0
arahy.Tifrunner.gnm1.ann1.V3N0NP Arachis hypogaea HOM05D005890 ORTHO05D006717 2.2e-20 104.8 174 40.2
CiPaw.08G031700 Carya illinoinensis HOM05D005890 ORTHO05D006717 2.2e-20 104.8 455 34.3
VMungo1215G0729 Vigna mungo HOM05D005890 ORTHO05D006717 1.4e-19 102.1 236 34.3
HanXRQChr10g0308981 Helianthus annuus HOM05D005890 ORTHO05D006717 2.5e-19 101.3 143 44.1
CsaV3_3G012070 Cucumis sativus L. HOM05D005890 ORTHO05D006717 3.2e-19 100.9 189 38.1
FAN17G2561 Fragaria x ananassa HOM05D005890 ORTHO05D006717 7.2e-19 99.8 478 29.7
Lsat_1_v5_gn_7_55781 Lactuca sativa HOM05D005890 ORTHO05D006717 9.3e-19 99.4 61 77.0
TAR637G0001 Trochodendron aralioides HOM05D005890 ORTHO05D006717 9.3e-19 99.4 65 72.3
FAN12G2329 Fragaria x ananassa HOM05D005890 ORTHO05D006717 2.7e-18 97.8 478 29.5
MELO3C006422.2 Cucumis melo HOM05D005890 ORTHO05D006717 3.6e-18 97.4 232 35.8
ECA234G0353 Erigeron canadensis HOM05D005890 ORTHO05D006717 3.6e-18 97.4 61 77.0
FAN07G1770 Fragaria x ananassa HOM05D005890 ORTHO05D006717 3.6e-18 97.4 478 29.9
TWI34G1560 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 3.6e-18 97.4 221 37.1
RcHm_v2.0_Chr4g0398981 Rosa chinensis HOM05D005890 ORTHO05D006717 6.1e-18 96.7 61 73.8
Sabra06G0054500 Salix brachista HOM05D005890 ORTHO05D006717 1.8e-17 95.1 499 28.5
Thecc.09G191500 Theobroma cacao HOM05D005890 ORTHO05D006717 3.0e-17 94.4 209 36.4
Sabra18G0114500 Salix brachista HOM05D005890 ORTHO05D006717 8.7e-17 92.8 500 26.6
Lsat_1_v5_gn_5_83860 Lactuca sativa HOM05D005890 ORTHO05D006717 1.1e-16 92.4 51 78.4
MD13G1240600 Malus domestica HOM05D005890 ORTHO05D006717 1.9e-16 91.7 406 32.8
Hund24378 Selenicereus undatus HOM05D005890 ORTHO05D006717 1.9e-16 91.7 119 45.4
TWI32G1283 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 1.9e-16 91.7 365 31.0
Glyma.13G101600 Glycine max HOM05D005890 ORTHO05D006717 2.5e-16 91.3 282 30.9
HanXRQChr03g0065401 Helianthus annuus HOM05D005890 ORTHO05D006717 2.5e-16 91.3 329 29.5
Phvul.003G140452 Phaseolus vulgaris HOM05D005890 ORTHO05D006717 4.3e-16 90.5 284 30.6
Lj4g0027857 Lotus japonicus HOM05D005890 ORTHO05D006717 7.4e-16 89.7 152 42.8
Sed0024384 Sechium edule HOM05D005890 ORTHO05D006717 7.4e-16 89.7 468 28.0
Lalb_Chr13g0299851 Lupinus albus HOM05D005890 ORTHO05D006717 9.7e-16 89.4 127 46.5
PSO063G0609 Papaver somniferum HOM05D005890 ORTHO05D006717 9.7e-16 89.4 61 67.2
PSO170G0082 Papaver somniferum HOM05D005890 ORTHO05D006717 9.7e-16 89.4 61 67.2
ECA240G0208 Erigeron canadensis HOM05D005890 ORTHO05D006717 1.7e-15 88.6 427 28.1
Gohir.A05G408300 Gossypium hirsutum HOM05D005890 ORTHO05D006717 1.7e-15 88.6 136 41.9
SEGI_20539 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 1.7e-15 88.6 79 53.2
THA.LOC104813501 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 2.2e-15 88.2 109 47.7
Sed0014693 Sechium edule HOM05D005890 ORTHO05D006717 2.8e-15 87.8 463 26.1
CDE02G0471 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 6.3e-15 86.7 248 34.7
CDE05G3513 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 6.3e-15 86.7 60 71.7
AUR62031274 Chenopodium quinoa HOM05D005890 ORTHO05D006717 8.2e-15 86.3 205 36.1
Ca_21262_v3 Cicer arietinum L. HOM05D005890 ORTHO05D006717 8.2e-15 86.3 62 67.7
THA.LOC104817770 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 8.2e-15 86.3 113 46.0
unitig_8.g3553 Utricularia gibba HOM05D005890 ORTHO05D006717 8.2e-15 86.3 242 32.6
Gorai.012G008900 Gossypium raimondii HOM05D005890 ORTHO05D006717 1.8e-14 85.1 136 41.2
Ah.14g085350 Amaranthus hybridus HOM05D005890 ORTHO05D006717 5.3e-14 83.6 193 34.2
ATR1098G092 Amborella trichopoda HOM05D005890 ORTHO05D006717 6.9e-14 83.2 237 30.8
AUR62027422 Chenopodium quinoa HOM05D005890 ORTHO05D006717 1.2e-13 82.4 227 35.2
Sp6g18850 Schrenkiella parvula HOM05D005890 ORTHO05D006717 1.2e-13 82.4 165 38.2
Potri.006G073100 Populus trichocarpa HOM05D005890 ORTHO05D006717 1.5e-13 82.0 487 26.3
Psat4g014480 Pisum sativum HOM05D005890 ORTHO05D006717 2.0e-13 81.6 56 67.9
PGR044G2166 Punica granatum HOM05D005890 ORTHO05D006717 3.4e-13 80.9 209 35.4
Cpa.g.sc115.65 Carica papaya HOM05D005890 ORTHO05D006717 5.9e-13 80.1 170 37.6
Os12g0613500 Oryza sativa ssp. japonica HOM05D005890 ORTHO05D006717 5.9e-13 80.1 230 30.9
Pp3c3_34440 Physcomitrium patens HOM05D005890 ORTHO05D006717 1.0e-12 79.3 51 70.6
Pp3c3_34441 Physcomitrium patens HOM05D005890 ORTHO05D006717 1.0e-12 79.3 51 70.6
Aa31LG3G13020 Aethionema arabicum HOM05D005890 ORTHO05D006717 1.3e-12 79.0 55 65.5
EL10Ac8g19296 Beta vulgaris HOM05D005890 ORTHO05D006717 1.3e-12 79.0 204 32.8
Zm00001eb136110 Zea mays HOM05D005890 ORTHO05D006717 2.9e-12 77.8 213 31.0
BcaC04g20011 Brassica carinata HOM05D005890 ORTHO05D006717 3.8e-12 77.4 45 73.3
C09p48820 Brassica napus HOM05D005890 ORTHO05D006717 3.8e-12 77.4 45 73.3
BolC9t57729H Brassica oleracea HOM05D005890 ORTHO05D006717 3.8e-12 77.4 45 73.3
BcaB08g36002 Brassica carinata HOM05D005890 ORTHO05D006717 5.0e-12 77.0 45 71.1
Thhalv10013871m.g Eutrema salsugineum HOM05D005890 ORTHO05D006717 6.5e-12 76.6 45 73.3
MBI18_g10586_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 8.5e-12 76.3 241 34.0
Zm00001eb172010 Zea mays HOM05D005890 ORTHO05D006717 8.5e-12 76.3 49 67.3
DCAR_029041 Daucus carota HOM05D005890 ORTHO05D006717 1.1e-11 75.9 223 33.6
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 1.1e-11 75.9 50 70.0
MBI14_g15782_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 1.4e-11 75.5 291 31.6
CARHR270890 Cardamine hirsuta HOM05D005890 ORTHO05D006717 1.9e-11 75.1 55 63.6
BcaB05g22318 Brassica carinata HOM05D005890 ORTHO05D006717 4.2e-11 73.9 45 71.1
BcaC03g14182 Brassica carinata HOM05D005890 ORTHO05D006717 4.2e-11 73.9 45 71.1
A02p08710 Brassica napus HOM05D005890 ORTHO05D006717 4.2e-11 73.9 45 71.1
C02p14590 Brassica napus HOM05D005890 ORTHO05D006717 4.2e-11 73.9 45 71.1
BolC2t07586H Brassica oleracea HOM05D005890 ORTHO05D006717 4.2e-11 73.9 45 71.1
BraA02t05941Z Brassica rapa HOM05D005890 ORTHO05D006717 4.2e-11 73.9 45 71.1
Mapoly0009s0141 Marchantia polymorpha HOM05D005890 ORTHO05D006717 4.2e-11 73.9 49 65.3
HPP92_018699 Vanilla planifolia HOM05D005890 ORTHO05D006717 7.2e-11 73.2 381 26.2
TPR.G5393 Trifolium pratense HOM05D005890 ORTHO05D006717 1.6e-10 72.0 177 34.5
CBR_g20282 Chara braunii HOM05D000019 ORTHO05D000002 2.0e-08 65.1 41 70.7
COL.COLO4_08570 Corchorus olitorius HOM05D005890 ORTHO05D006717 2.6e-08 64.7 388 29.9
AagrBONN_evm.TU.Sc2ySwM_368.973 Anthoceros agrestis HOM05D005890 ORTHO05D006717 7.4e-08 63.2 56 53.6
DCAR_001127 Daucus carota HOM05D000703 ORTHO05D006717 2.2e-07 61.6 42 69.0
AT5G57120 Arabidopsis thaliana HOM05D005890 ORTHO05D006717 6.3e-07 60.1 55 52.7
FvH4_4g06950 Fragaria vesca HOM05D005890 ORTHO05D006717 1.8e-06 58.5 447 26.8
AL8G33040 Arabidopsis lyrata HOM05D005890 ORTHO05D006717 5.3e-06 57.0 45 62.2


User provided reference genes

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