Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.2e-106 389.8 199 100.0
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 7.1e-86 320.9 192 82.8
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 1.6e-85 319.7 196 81.1
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 2.7e-85 318.9 192 82.8
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 3.5e-85 318.5 195 82.6
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 6.0e-85 317.8 192 82.8
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 3.0e-84 315.5 194 82.5
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 5.1e-84 314.7 193 82.4
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.1e-83 313.5 191 87.4
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 2.5e-83 312.4 191 81.7
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 4.3e-83 311.6 192 81.8
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 4.3e-83 311.6 195 80.0
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 7.4e-83 310.8 195 80.0
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 1.3e-82 310.1 195 80.0
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 1.6e-82 309.7 191 80.1
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 1.6e-82 309.7 192 81.8
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 2.1e-82 309.3 191 80.1
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 2.1e-82 309.3 191 80.1
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 2.8e-82 308.9 195 80.5
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 4.8e-82 308.1 195 80.0
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 6.2e-82 307.8 191 81.7
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 6.2e-82 307.8 196 79.1
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 1.1e-81 307.0 192 81.8
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 1.4e-81 306.6 192 79.2
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 1.8e-81 306.2 196 79.6
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 1.8e-81 306.2 191 80.1
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 1.8e-81 306.2 192 79.2
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 2.4e-81 305.8 195 79.5
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 4.0e-81 305.1 196 79.1
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 6.9e-81 304.3 192 79.2
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 6.9e-81 304.3 194 80.4
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 9.0e-81 303.9 194 79.4
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 9.0e-81 303.9 192 78.6
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 9.0e-81 303.9 192 78.6
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 1.2e-80 303.5 194 77.8
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 1.2e-80 303.5 191 78.5
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 1.2e-80 303.5 192 78.6
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 1.5e-80 303.1 195 78.5
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 2.0e-80 302.8 192 77.6
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 4.5e-80 301.6 195 79.5
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 5.8e-80 301.2 192 78.1
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 5.8e-80 301.2 191 78.0
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 7.6e-80 300.8 193 78.2
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 7.6e-80 300.8 194 78.4
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 7.6e-80 300.8 194 78.4
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 1.0e-79 300.4 192 77.1
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 1.0e-79 300.4 194 78.9
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 1.0e-79 300.4 192 78.1
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 1.3e-79 300.1 191 80.1
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 1.3e-79 300.1 191 78.5
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 1.3e-79 300.1 192 77.6
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 1.7e-79 299.7 191 77.5
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.2e-79 299.3 194 78.9
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 2.9e-79 298.9 193 79.3
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.8e-79 298.5 194 78.9
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 4.9e-79 298.1 222 71.2
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 6.5e-79 297.7 194 78.4
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 8.4e-79 297.4 191 79.6
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 3.2e-78 295.4 192 78.6
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 5.5e-78 294.7 196 75.5
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 7.1e-78 294.3 191 77.0
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 1.2e-77 293.5 194 75.3
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 1.2e-77 293.5 192 78.1
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 1.2e-77 293.5 192 76.6
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 1.2e-77 293.5 196 75.5
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 4.6e-77 291.6 192 75.5
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 4.6e-77 291.6 191 76.4
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 6.0e-77 291.2 191 75.9
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 7.9e-77 290.8 194 76.8
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 1.0e-76 290.4 196 75.0
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 1.3e-76 290.0 192 76.6
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 1.8e-76 289.7 191 75.9
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 1.8e-76 289.7 191 75.9
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 1.8e-76 289.7 197 75.1
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 3.0e-76 288.9 191 75.4
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 3.0e-76 288.9 191 75.4
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 3.9e-76 288.5 192 78.1
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 6.7e-76 287.7 196 73.0
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 8.7e-76 287.3 191 75.4
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 1.5e-75 286.6 191 74.9
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 1.5e-75 286.6 191 74.9
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 1.5e-75 286.6 191 75.4
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 1.9e-75 286.2 191 74.3
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 1.9e-75 286.2 191 74.3
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 3.3e-75 285.4 192 74.5
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 9.6e-75 283.9 193 75.6
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 9.6e-75 283.9 192 73.4
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 9.6e-75 283.9 191 74.9
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 1.3e-74 283.5 175 81.1
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 1.6e-74 283.1 191 73.8
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 2.1e-74 282.7 191 74.3
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 2.8e-74 282.3 191 74.9
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 2.8e-74 282.3 191 74.3
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 2.8e-74 282.3 191 74.3
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 2.8e-74 282.3 191 74.3
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 6.3e-74 281.2 168 81.0
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 1.1e-73 280.4 191 74.3
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 1.4e-73 280.0 191 73.8
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.8e-73 279.6 191 73.3
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.8e-73 279.6 191 73.3
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 1.8e-73 279.6 191 73.3
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 1.2e-72 276.9 191 72.8
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 3.4e-72 275.4 191 73.3
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 5.9e-72 274.6 196 72.4
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 5.9e-72 274.6 196 72.4
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 3.8e-71 271.9 192 73.4
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 5.0e-71 271.6 192 69.3
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 1.1e-70 270.4 192 72.4
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.1e-70 270.4 193 72.0
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 4.2e-70 268.5 191 70.2
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 4.2e-70 268.5 194 71.6
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 5.5e-70 268.1 191 70.2
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 9.3e-70 267.3 183 70.5
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 9.3e-70 267.3 193 71.5
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.1e-69 266.2 191 70.7
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 6.1e-69 264.6 191 69.6
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 8.2e-66 254.2 192 66.1
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 1.2e-64 250.4 167 74.3
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 7.7e-64 247.7 201 67.2
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.3e-63 246.9 191 68.1
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 1.7e-63 246.5 193 65.3
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 3.8e-63 245.4 194 65.5
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 5.0e-63 245.0 175 70.9
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 3.0e-60 235.7 191 63.9
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 1.1e-59 233.8 191 64.4
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 4.5e-56 221.9 146 76.0
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 7.7e-56 221.1 138 78.3
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 1.7e-55 219.9 201 57.7
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 2.2e-55 219.5 194 62.9
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 3.8e-55 218.8 196 59.2
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 1.8e-52 209.9 199 55.3
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 3.0e-52 209.1 192 57.8
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 5.2e-52 208.4 128 79.7
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 1.4e-49 200.3 129 75.2
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 2.0e-48 196.4 201 54.7
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 2.2e-47 193.0 138 71.7
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 3.6e-45 185.7 100 88.0
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 2.3e-44 183.0 131 69.5
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.4e-43 178.7 131 69.5
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 5.0e-39 165.2 131 65.6
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 4.5e-32 142.1 191 45.0
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 1.3e-31 140.6 118 64.4
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.7e-31 140.2 77 83.1
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 4.7e-29 132.1 114 59.6
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 3.4e-27 125.9 157 48.4
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 1.4e-25 120.6 128 57.0
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 4.7e-21 105.5 140 47.1
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 4.7e-21 105.5 71 76.1
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 1.4e-17 94.0 64 76.6
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 7.0e-17 91.7 165 36.4
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 2.0e-16 90.1 86 58.1
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 5.9e-16 88.6 64 71.9
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 1.7e-15 87.0 63 74.6
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 3.3e-14 82.8 66 68.2
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 9.5e-14 81.3 68 66.2
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 8.9e-12 74.7 45 75.6
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 8.9e-12 74.7 45 75.6
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 3.7e-10 69.3 46 80.4
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 8.3e-10 68.2 64 56.2
A09p34420 Brassica napus HOM05D004185 ORTHO05D040565 7.8e-08 61.6 38 68.4
BraA09t38986Z Brassica rapa HOM05D004185 ORTHO05D040565 7.8e-08 61.6 38 68.4
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 7.8e-08 61.6 62 53.2
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 8.6e-07 58.2 173 30.1
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 3.3e-06 56.2 36 72.2
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 3.3e-06 56.2 36 72.2
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 4.3e-06 55.8 36 72.2


User provided reference genes

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