Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1382.1 713 100.0
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1352.8 713 97.8
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1329.7 713 96.9
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1283.5 712 94.4
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 0.0e+00 1274.6 708 91.8
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 0.0e+00 1250.0 715 89.1
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1247.6 742 88.8
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 0.0e+00 1243.4 713 88.6
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 0.0e+00 1237.6 713 87.8
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 0.0e+00 1237.2 708 88.3
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 0.0e+00 1235.7 715 87.3
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 0.0e+00 1235.3 704 89.1
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1234.6 705 89.2
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 0.0e+00 1233.8 714 87.7
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 0.0e+00 1233.0 720 88.1
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 0.0e+00 1230.7 709 88.2
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 0.0e+00 1227.6 705 88.7
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 0.0e+00 1227.2 706 88.1
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 0.0e+00 1226.1 705 87.2
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 0.0e+00 1225.7 713 87.2
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 0.0e+00 1224.2 713 86.8
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 0.0e+00 1223.0 711 86.6
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 0.0e+00 1221.5 713 86.7
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1219.5 705 88.7
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 0.0e+00 1216.4 714 86.4
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 0.0e+00 1215.7 706 86.8
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 0.0e+00 1215.7 702 86.9
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 0.0e+00 1215.3 704 87.2
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 0.0e+00 1214.9 715 86.9
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 0.0e+00 1214.5 709 88.0
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 0.0e+00 1213.7 710 85.4
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1213.0 705 87.0
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1212.6 714 86.3
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 0.0e+00 1211.8 700 86.7
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1210.7 704 86.6
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 0.0e+00 1208.7 711 85.1
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 0.0e+00 1208.7 702 86.8
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 0.0e+00 1205.3 700 86.3
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 0.0e+00 1204.5 716 87.7
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 0.0e+00 1203.3 701 86.3
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 0.0e+00 1202.6 732 84.3
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 0.0e+00 1200.3 692 87.9
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 0.0e+00 1199.5 696 86.4
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 0.0e+00 1197.2 701 86.9
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1196.0 705 86.5
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 0.0e+00 1192.2 713 84.2
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1190.6 705 85.8
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 0.0e+00 1189.9 719 86.5
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1188.3 713 84.6
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 0.0e+00 1185.6 701 85.7
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 0.0e+00 1181.4 693 86.0
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 0.0e+00 1174.5 711 83.7
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1173.3 680 89.3
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 0.0e+00 1171.0 688 85.9
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 0.0e+00 1169.1 710 84.2
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 0.0e+00 1162.5 693 84.7
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1161.0 712 84.0
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1161.0 712 84.0
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 0.0e+00 1152.9 706 82.4
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 0.0e+00 1145.2 709 80.0
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 0.0e+00 1142.5 709 80.0
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 0.0e+00 1131.7 709 79.1
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 0.0e+00 1130.9 711 82.6
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 0.0e+00 1130.5 704 81.7
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 0.0e+00 1126.7 708 79.4
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 0.0e+00 1125.5 708 81.9
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 0.0e+00 1121.7 702 80.6
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 0.0e+00 1120.9 702 80.9
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1120.5 701 81.0
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1120.1 701 80.9
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1119.4 701 80.9
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1117.8 701 80.9
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1117.8 701 80.9
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 0.0e+00 1116.3 725 81.0
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 0.0e+00 1115.5 702 82.9
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1114.8 701 80.7
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 0.0e+00 1110.9 698 80.7
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 0.0e+00 1109.0 701 79.7
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 0.0e+00 1108.2 699 79.3
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 0.0e+00 1107.4 702 79.5
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1104.7 740 81.1
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1102.0 698 79.8
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1099.3 698 79.5
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 0.0e+00 1098.6 655 85.0
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1094.0 698 79.2
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1094.0 698 79.2
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1094.0 698 79.2
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1088.6 618 88.5
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1084.3 704 78.3
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 0.0e+00 1083.9 693 79.2
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 4.9e-312 1074.3 695 81.0
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 9.8e-312 1073.2 619 87.7
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 1.1e-309 1066.2 717 79.5
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 3.1e-309 1064.7 685 81.9
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 2.6e-308 1061.6 690 78.1
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 1.5e-306 1055.8 702 76.6
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 2.5e-306 1055.0 659 81.6
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 2.3e-304 1048.5 693 77.1
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 8.8e-304 1046.6 655 80.6
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 5.7e-303 1043.9 686 77.0
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 9.1e-301 1036.6 704 75.0
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.0e-295 1018.8 704 73.7
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 4.4e-295 1017.7 714 74.6
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 1.6e-292 1009.2 583 88.0
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 3.6e-289 998.0 694 73.9
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 5.2e-288 994.2 639 78.1
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 2.6e-287 991.9 569 88.9
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 5.9e-284 980.7 541 91.9
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 1.0e-275 953.4 737 71.4
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 1.2e-268 929.9 698 72.9
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 1.9e-253 879.4 695 67.2
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 1.4e-245 853.2 522 81.6
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 6.0e-244 847.8 567 76.2
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 7.9e-236 820.8 539 78.7
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 1.5e-234 816.6 450 92.7
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.3e-214 750.4 556 75.5
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 1.8e-211 740.0 685 56.2
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 5.7e-210 734.9 620 65.0
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 7.7e-199 698.0 632 56.2
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.0e-194 683.3 402 87.6
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.6e-194 682.9 392 89.3
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 4.1e-184 649.0 517 68.3
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 3.5e-175 619.4 638 50.5
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.7e-172 609.8 399 83.0
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 3.8e-166 589.3 639 48.5
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.5e-165 587.4 639 48.0
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 8.3e-145 518.5 724 45.3
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 4.7e-140 502.7 638 42.5
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 6.8e-139 498.8 630 43.2
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.7e-134 484.2 643 42.0
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 9.6e-133 478.4 623 43.7
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 4.7e-132 476.1 306 76.5
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.1e-115 420.2 399 63.4
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 7.4e-109 399.1 399 53.9
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 5.8e-106 389.4 250 80.8
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 3.7e-92 343.6 220 72.7
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 5.0e-73 280.0 224 68.8
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.3e-62 244.6 171 79.5
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 5.9e-58 229.9 130 86.9
Mapoly1910s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 8.0e-39 166.4 138 56.5
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 6.6e-33 146.7 78 92.3
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 3.4e-29 134.4 101 66.3
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 5.1e-25 120.6 63 85.7
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 2.8e-23 114.8 59 88.1
CSS0009431 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D113607 1.4e-22 112.5 67 83.6
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 1.8e-22 112.1 61 88.5
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 3.1e-22 111.3 92 64.1
CSS0001366 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112087 4.0e-22 110.9 67 82.1
CSS0040812 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D111646 2.0e-21 108.6 62 87.1
CSS0022754 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D109566 1.3e-20 105.9 62 85.5
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 8.7e-17 93.2 56 78.6
arahy.Tifrunner.gnm1.ann1.D5QS8R Arachis hypogaea HOM05D000487 ORTHO05D000389 2.4e-06 58.5 30 76.7


User provided reference genes

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