Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049473 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 2.3e-66 255.4 125 100.0
CSS0019600 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 2.0e-62 242.3 125 96.8
TAR629G2489 Trochodendron aralioides HOM05D007041 ORTHO05D008036 3.9e-21 105.1 130 46.2
QL02p031389 Quercus lobata HOM05D007041 ORTHO05D008036 3.1e-18 95.5 111 46.8
TAR636G2915 Trochodendron aralioides HOM05D007041 ORTHO05D008036 8.9e-18 94.0 118 47.5
Manes.02G012400 Manihot esculenta HOM05D007041 ORTHO05D008036 1.9e-15 86.3 115 43.5
Manes.02G012350 Manihot esculenta HOM05D007041 ORTHO05D008036 7.0e-15 84.3 115 42.6
Prupe.2G184300 Prunus persica HOM05D007041 ORTHO05D008036 4.6e-14 81.6 118 42.4
Thecc.01G346300 Theobroma cacao HOM05D007041 ORTHO05D008036 6.0e-14 81.3 124 39.5
Nitab4.5_0007594g0010 Nicotiana tabacum HOM05D007041 ORTHO05D008036 1.7e-13 79.7 119 39.5
FAN10G1361 Fragaria x ananassa HOM05D007041 ORTHO05D008036 2.3e-13 79.3 121 43.8
FvH4_7g16050 Fragaria vesca HOM05D007041 ORTHO05D008036 3.9e-13 78.6 120 44.2
Potri.001G094000 Populus trichocarpa HOM05D007041 ORTHO05D008036 3.9e-13 78.6 111 39.6
FAN03G1744 Fragaria x ananassa HOM05D007041 ORTHO05D008036 5.1e-13 78.2 121 43.0
FAN10G2988 Fragaria x ananassa HOM05D007041 ORTHO05D008036 5.1e-13 78.2 121 43.8
Lj3g0003817 Lotus japonicus HOM05D007041 ORTHO05D008036 6.6e-13 77.8 117 44.4
Lalb_Chr17g0342361 Lupinus albus HOM05D007041 ORTHO05D008036 6.6e-13 77.8 112 39.3
MD07G1146000 Malus domestica HOM05D007041 ORTHO05D008036 6.6e-13 77.8 108 45.4
Atru.chr5.628 Acer truncatum HOM05D007041 ORTHO05D008036 8.6e-13 77.4 109 40.4
Nitab4.5_0000305g0050 Nicotiana tabacum HOM05D007041 ORTHO05D008036 8.6e-13 77.4 121 38.0
FAN06G2039 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.1e-12 77.0 121 43.0
CiPaw.12G084900 Carya illinoinensis HOM05D007041 ORTHO05D008036 1.5e-12 76.6 122 39.3
Gohir.D08G147100 Gossypium hirsutum HOM05D007041 ORTHO05D008036 1.9e-12 76.3 100 45.0
Gorai.004G152600 Gossypium raimondii HOM05D007041 ORTHO05D008036 1.9e-12 76.3 100 45.0
Oeu007854.1 Olea europaea HOM05D007041 ORTHO05D008036 3.3e-12 75.5 115 38.3
RcHm_v2.0_Chr1g0358991 Rosa chinensis HOM05D007041 ORTHO05D008036 3.3e-12 75.5 112 43.8
CiPaw.02G039100 Carya illinoinensis HOM05D007041 ORTHO05D008036 4.3e-12 75.1 134 37.3
Manes.05G025400 Manihot esculenta HOM05D007041 ORTHO05D008036 9.5e-12 73.9 112 41.1
COL.COLO4_06320 Corchorus olitorius HOM05D007041 ORTHO05D008036 1.2e-11 73.6 131 38.2
vmacro22517 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 4.7e-11 71.6 108 39.8
FAN06G3979 Fragaria x ananassa HOM05D007041 ORTHO05D008036 6.2e-11 71.2 43 74.4
Glyma.16G026800 Glycine max HOM05D007041 ORTHO05D008036 6.2e-11 71.2 128 36.7
EL10Ac1g00306 Beta vulgaris HOM05D007041 ORTHO05D008036 8.1e-11 70.9 73 49.3
Cpa.g.sc2382.1 Carica papaya HOM05D007041 ORTHO05D008036 8.1e-11 70.9 56 57.1
Rhsim01G0170500 Rhododendron simsii HOM05D007041 ORTHO05D008036 8.1e-11 70.9 44 70.5
Sc01g0010130 Simmondsia chinensis HOM05D007041 ORTHO05D008036 1.1e-10 70.5 112 38.4
Sabra01G0069900 Salix brachista HOM05D007041 ORTHO05D008036 1.4e-10 70.1 102 38.2
Rhsim01G0170200 Rhododendron simsii HOM05D007041 ORTHO05D008036 1.8e-10 69.7 44 70.5
vmacro22516 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 2.3e-10 69.3 45 68.9
Potri.003G137600 Populus trichocarpa HOM05D007041 ORTHO05D008036 3.1e-10 68.9 99 41.4
AT3G61660 Arabidopsis thaliana HOM05D007041 ORTHO05D008036 4.0e-10 68.6 110 40.0
CiPaw.01G073300 Carya illinoinensis HOM05D007041 ORTHO05D008036 4.0e-10 68.6 53 60.4
Nn1g01816 Nelumbo nucifera HOM05D007041 ORTHO05D008036 4.0e-10 68.6 94 41.5
Potri.002G168300 Populus trichocarpa HOM05D007041 ORTHO05D008036 4.0e-10 68.6 121 35.5
Actinidia28494 Actinidia chinensis HOM05D000017 ORTHO05D008036 8.9e-10 67.4 44 70.5
Gohir.A12G234950 Gossypium hirsutum HOM05D007041 ORTHO05D008036 8.9e-10 67.4 105 38.1
Sabra14G0070100 Salix brachista HOM05D007041 ORTHO05D008036 8.9e-10 67.4 119 37.0
Potri.014G095600 Populus trichocarpa HOM05D007041 ORTHO05D008036 1.2e-09 67.0 133 35.3
Thhalv10006386m.g Eutrema salsugineum HOM05D007041 ORTHO05D008036 1.5e-09 66.6 111 39.6
Gorai.008G252800 Gossypium raimondii HOM05D007041 ORTHO05D008036 1.5e-09 66.6 105 38.1
vmacro22515 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 2.0e-09 66.2 106 41.5
Gohir.D12G236050 Gossypium hirsutum HOM05D007041 ORTHO05D008036 2.6e-09 65.9 105 38.1
Thecc.03G293400 Theobroma cacao HOM05D007041 ORTHO05D008036 2.6e-09 65.9 96 44.8
Peaxi162Scf00843g00001 Petunia axillaris HOM05D007041 ORTHO05D008036 3.4e-09 65.5 117 35.0
VMungo0331G1585 Vigna mungo HOM05D007041 ORTHO05D008036 4.4e-09 65.1 39 66.7
Glyma.07G057800 Glycine max HOM05D007041 ORTHO05D008036 5.8e-09 64.7 113 35.4
Rhsim07G0006100 Rhododendron simsii HOM05D000337 ORTHO05D000297 5.8e-09 64.7 110 40.0
Rhsim07G0083800 Rhododendron simsii HOM05D007041 ORTHO05D008036 5.8e-09 64.7 84 44.0
AL5G44060 Arabidopsis lyrata HOM05D007041 ORTHO05D008036 7.5e-09 64.3 108 42.6
SalBow3G2736 Salvia bowleyana HOM05D007041 ORTHO05D008036 7.5e-09 64.3 101 39.6
Gorai.001G156400 Gossypium raimondii HOM05D007041 ORTHO05D008036 1.3e-08 63.5 101 40.6
Oeu009948.1 Olea europaea HOM05D007041 ORTHO05D008036 1.7e-08 63.2 107 39.3
Phvul.010G111500 Phaseolus vulgaris HOM05D007041 ORTHO05D008036 1.7e-08 63.2 129 34.1
CSS0039531 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 2.2e-08 62.8 61 47.5
CANSAT56G1227 Cannabis sativa HOM05D007041 ORTHO05D008036 2.2e-08 62.8 104 40.4
CARHR171970 Cardamine hirsuta HOM05D007041 ORTHO05D008036 2.2e-08 62.8 110 38.2
MELO3C006045.2 Cucumis melo HOM05D007041 ORTHO05D008036 2.2e-08 62.8 117 38.5
Sp5g01745 Schrenkiella parvula HOM05D007041 ORTHO05D008036 2.2e-08 62.8 35 68.6
CsaV3_3G008250 Cucumis sativus L. HOM05D007041 ORTHO05D008036 2.9e-08 62.4 33 75.8
Gohir.A07G139300 Gossypium hirsutum HOM05D007041 ORTHO05D008036 2.9e-08 62.4 101 36.6
Oeu007855.1 Olea europaea HOM05D007041 ORTHO05D008036 2.9e-08 62.4 92 35.9
Gohir.D07G144400 Gossypium hirsutum HOM05D007041 ORTHO05D008036 3.7e-08 62.0 101 39.6
Prupe.5G115500 Prunus persica HOM05D007041 ORTHO05D008036 3.7e-08 62.0 119 33.6
Glyma.19G254100 Glycine max HOM05D007041 ORTHO05D008036 6.4e-08 61.2 111 36.0
TPR.G7661 Trifolium pratense HOM05D007041 ORTHO05D008036 6.4e-08 61.2 120 36.7
Medtr7g117120 Medicago truncatula HOM05D007041 ORTHO05D008036 8.3e-08 60.8 102 36.3
Nn3g19073 Nelumbo nucifera HOM05D007041 ORTHO05D008036 8.3e-08 60.8 134 35.1
Sed0010994 Sechium edule HOM05D007041 ORTHO05D008036 8.3e-08 60.8 31 80.6
C08p36510 Brassica napus HOM05D007041 ORTHO05D008036 1.1e-07 60.5 112 39.3
BolC8t51234H Brassica oleracea HOM05D007041 ORTHO05D008036 1.1e-07 60.5 112 39.3
Carub.0005s2835 Capsella rubella HOM05D007041 ORTHO05D008036 1.1e-07 60.5 119 36.1
arahy.Tifrunner.gnm1.ann1.JU2T19 Arachis hypogaea HOM05D007041 ORTHO05D008036 1.4e-07 60.1 34 70.6
arahy.Tifrunner.gnm1.ann1.LKBY4F Arachis hypogaea HOM05D007041 ORTHO05D008036 1.4e-07 60.1 34 70.6
BraA09t40795Z Brassica rapa HOM05D007041 ORTHO05D008036 1.9e-07 59.7 111 37.8
Medtr8g027905 Medicago truncatula HOM05D001941 ORTHO05D008036 1.9e-07 59.7 90 43.3
RcHm_v2.0_Chr7g0195411 Rosa chinensis HOM05D017100 ORTHO05D008036 1.9e-07 59.7 46 63.0
arahy.Tifrunner.gnm1.ann1.3XXF02 Arachis hypogaea HOM05D007041 ORTHO05D008036 2.4e-07 59.3 38 68.4
A09p53730 Brassica napus HOM05D007041 ORTHO05D008036 2.4e-07 59.3 112 38.4
Lsat_1_v5_gn_7_2180 Lactuca sativa HOM05D007041 ORTHO05D008036 2.4e-07 59.3 100 38.0
Zm00001eb310140 Zea mays HOM05D007041 ORTHO05D008036 2.4e-07 59.3 41 56.1
Zm00001eb441140 Zea mays HOM05D007041 ORTHO05D008036 2.4e-07 59.3 41 56.1
Ca_09497_v3 Cicer arietinum L. HOM05D007041 ORTHO05D008036 3.2e-07 58.9 113 38.1
Haze_08658 Corylus avellana HOM05D007041 ORTHO05D008036 3.2e-07 58.9 92 39.1
MSTRG.13877 Avicennia marina HOM05D007041 ORTHO05D008036 4.1e-07 58.5 41 58.5
Medtr8g027305 Medicago truncatula HOM05D007041 ORTHO05D008036 4.1e-07 58.5 39 64.1
Sabra02G0143600 Salix brachista HOM05D007041 ORTHO05D008036 5.4e-07 58.2 106 33.0
AUR62023489 Chenopodium quinoa HOM05D007041 ORTHO05D008036 9.2e-07 57.4 37 73.0
Manes.01G248300 Manihot esculenta HOM05D007041 ORTHO05D008036 9.2e-07 57.4 104 39.4
Nn2g15118 Nelumbo nucifera HOM05D007041 ORTHO05D008036 1.2e-06 57.0 95 40.0
Migut.B01841 Erythranthe guttata HOM05D007041 ORTHO05D008036 1.6e-06 56.6 94 36.2
FvH4_5g04090 Fragaria vesca HOM05D017100 ORTHO05D008036 1.6e-06 56.6 31 74.2
FAN13G1599 Fragaria x ananassa HOM05D017100 ORTHO05D008036 1.6e-06 56.6 31 74.2
FAN18G0435 Fragaria x ananassa HOM05D017100 ORTHO05D008036 1.6e-06 56.6 31 74.2
FAN18G2618 Fragaria x ananassa HOM05D017100 ORTHO05D008036 1.6e-06 56.6 31 74.2
Sopen08g030330 Solanum pennellii HOM05D002045 ORTHO05D002014 2.1e-06 56.2 30 76.7
HPP92_007621 Vanilla planifolia HOM05D007041 ORTHO05D008036 2.1e-06 56.2 29 75.9
ECA236G3839 Erigeron canadensis HOM05D007041 ORTHO05D008036 2.7e-06 55.8 125 34.4
Medtr8g027915 Medicago truncatula HOM05D007041 ORTHO05D008036 3.5e-06 55.5 45 55.6
Nitab4.5_0000223g0230 Nicotiana tabacum HOM05D007041 ORTHO05D008036 4.6e-06 55.1 83 38.6
PGSC0003DMG400000096 Solanum tuberosum HOM05D007041 ORTHO05D008036 4.6e-06 55.1 48 52.1
FAN04G1004 Fragaria x ananassa HOM05D017100 ORTHO05D008036 7.8e-06 54.3 31 71.0
FAN04G2843 Fragaria x ananassa HOM05D017100 ORTHO05D008036 7.8e-06 54.3 31 71.0
FAN08G3467 Fragaria x ananassa HOM05D017100 ORTHO05D008036 7.8e-06 54.3 31 71.0
Nitab4.5_0004161g0040 Nicotiana tabacum HOM05D007041 ORTHO05D008036 7.8e-06 54.3 64 43.8


User provided reference genes

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