Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049441 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 2.2e-128 462.2 219 100.0
Actinidia05326 Actinidia chinensis HOM05D005320 ORTHO05D007922 1.6e-118 429.5 219 93.6
Rhsim05G0195000 Rhododendron simsii HOM05D005320 ORTHO05D007922 2.3e-117 425.6 219 93.2
Dinv35573 Davidia involucrata HOM05D005320 ORTHO05D007922 3.3e-116 421.8 219 92.2
Manes.09G092200 Manihot esculenta HOM05D005320 ORTHO05D007922 1.8e-114 416.0 219 90.9
GSVIVG01034127001 Vitis vinifera HOM05D005320 ORTHO05D007922 2.3e-114 415.6 219 90.4
vmacro20179 Vaccinium macrocarpon HOM05D005320 ORTHO05D007922 8.9e-114 413.7 235 86.0
Thecc.05G035400 Theobroma cacao HOM05D005320 ORTHO05D007922 1.5e-113 412.9 219 90.0
Hma1.2p1_1082F.1_g255150 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 4.4e-113 411.4 220 90.5
Gohir.A04G083900 Gossypium hirsutum HOM05D005320 ORTHO05D007922 9.8e-113 410.2 219 89.0
Dinv37147 Davidia involucrata HOM05D005320 ORTHO05D007922 1.7e-112 409.5 241 83.8
Nitab4.5_0000770g0150 Nicotiana tabacum HOM05D005320 ORTHO05D007922 2.9e-112 408.7 220 90.5
PSO339G2759 Papaver somniferum HOM05D005320 ORTHO05D007922 2.9e-112 408.7 219 88.1
Nn2g11189 Nelumbo nucifera HOM05D005320 ORTHO05D007922 3.7e-112 408.3 219 88.1
Gohir.D04G122700 Gossypium hirsutum HOM05D005320 ORTHO05D007922 4.9e-112 407.9 219 88.6
MD04G1133400 Malus domestica HOM05D005320 ORTHO05D007922 6.4e-112 407.5 219 88.6
QL07p030104 Quercus lobata HOM05D005320 ORTHO05D007922 8.3e-112 407.1 218 88.5
QL07p030908 Quercus lobata HOM05D005320 ORTHO05D007922 8.3e-112 407.1 218 88.5
CiPaw.09G195900 Carya illinoinensis HOM05D005320 ORTHO05D007922 1.9e-111 406.0 219 89.0
PSO063G2683 Papaver somniferum HOM05D005320 ORTHO05D007922 1.9e-111 406.0 219 87.7
PGR031G0341 Punica granatum HOM05D005320 ORTHO05D007922 3.2e-111 405.2 219 88.6
Ciclev10012735m.g Citrus clementina HOM05D005320 ORTHO05D007922 4.1e-111 404.8 219 87.2
TWI74G0393 Tripterygium wilfordii HOM05D005320 ORTHO05D007922 4.1e-111 404.8 219 89.0
Gorai.012G105600 Gossypium raimondii HOM05D005320 ORTHO05D007922 5.4e-111 404.4 223 87.4
MD12G1146200 Malus domestica HOM05D005320 ORTHO05D007922 5.4e-111 404.4 219 88.6
CANSAT35G1431 Cannabis sativa HOM05D005320 ORTHO05D007922 1.2e-110 403.3 220 88.6
COL.COLO4_14757 Corchorus olitorius HOM05D005320 ORTHO05D007922 1.2e-110 403.3 219 87.7
arahy.Tifrunner.gnm1.ann1.AE34S8 Arachis hypogaea HOM05D005320 ORTHO05D007922 1.6e-110 402.9 220 88.6
Aqoxy1G00876 Aquilegia oxysepala HOM05D005320 ORTHO05D007922 4.6e-110 401.4 222 86.9
arahy.Tifrunner.gnm1.ann1.SHW8SI Arachis hypogaea HOM05D005320 ORTHO05D007922 4.6e-110 401.4 220 88.2
Prupe.6G259400 Prunus persica HOM05D005320 ORTHO05D007922 4.6e-110 401.4 219 88.1
Sc07g0007050 Simmondsia chinensis HOM05D005320 ORTHO05D007922 2.3e-109 399.1 217 86.6
Atru.chr8.2015 Acer truncatum HOM05D005320 ORTHO05D007922 3.9e-109 398.3 220 87.7
CAN.G324.16 Capsicum annuum HOM05D005320 ORTHO05D007922 1.5e-108 396.4 220 88.2
Migut.J00304 Erythranthe guttata HOM05D005320 ORTHO05D007922 2.5e-108 395.6 219 85.4
SGA_v2.0_scaffold126G33759 Striga asiatica HOM05D005320 ORTHO05D007922 7.3e-108 394.0 219 85.4
Lsat_1_v5_gn_5_153940 Lactuca sativa HOM05D005320 ORTHO05D007922 1.2e-107 393.3 219 86.8
Lj3A964T54 Lonicera japonica HOM05D005320 ORTHO05D007922 1.6e-107 392.9 252 77.4
Ca_20076_v3 Cicer arietinum L. HOM05D005320 ORTHO05D007922 2.8e-107 392.1 221 85.5
ClCG04G008030 Citrullus lanatus HOM05D005320 ORTHO05D007922 2.8e-107 392.1 219 86.3
Lalb_Chr01g0013501 Lupinus albus HOM05D005320 ORTHO05D007922 2.8e-107 392.1 219 85.8
Sopen10g034290 Solanum pennellii HOM05D005320 ORTHO05D007922 2.8e-107 392.1 220 87.3
Cc06_g02320 Coffea canephora HOM05D005320 ORTHO05D007922 3.6e-107 391.7 219 85.4
Solyc10g084850.2 Solanum lycopersicum HOM05D005320 ORTHO05D007922 3.6e-107 391.7 220 87.3
PGSC0003DMG400011070 Solanum tuberosum HOM05D005320 ORTHO05D007922 3.6e-107 391.7 220 87.3
unitig_21.g21010 Utricularia gibba HOM05D005320 ORTHO05D007922 3.6e-107 391.7 219 84.5
MBI05_g35634_MAGBIO Magnolia biondii HOM05D005320 ORTHO05D007922 6.2e-107 391.0 220 84.5
Potri.016G100600 Populus trichocarpa HOM05D005320 ORTHO05D007922 6.2e-107 391.0 229 83.4
CsaV3_4G025180 Cucumis sativus L. HOM05D005320 ORTHO05D007922 1.1e-106 390.2 219 85.8
HanXRQChr13g0406901 Helianthus annuus HOM05D005320 ORTHO05D007922 1.4e-106 389.8 219 85.4
MSTRG.19072 Avicennia marina HOM05D005320 ORTHO05D007922 1.8e-106 389.4 219 84.5
CDE07G0950 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 2.3e-106 389.0 219 82.2
Psat7g239840 Pisum sativum HOM05D005320 ORTHO05D007922 8.9e-106 387.1 221 84.2
Glyma.03G068800 Glycine max HOM05D005320 ORTHO05D007922 1.2e-105 386.7 221 83.3
Medtr4g020460 Medicago truncatula HOM05D005320 ORTHO05D007922 1.2e-105 386.7 221 84.6
CDE06G1896 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 1.5e-105 386.3 219 83.6
Glyma.01G100200 Glycine max HOM05D005320 ORTHO05D007922 2.0e-105 386.0 221 83.3
ECA248G2752 Erigeron canadensis HOM05D005320 ORTHO05D007922 2.6e-105 385.6 220 85.5
RcHm_v2.0_Chr3g0466041 Rosa chinensis HOM05D005320 ORTHO05D007922 7.5e-105 384.0 220 85.0
TPR.G17890 Trifolium pratense HOM05D005320 ORTHO05D007922 7.5e-105 384.0 221 83.7
Lj3g0008944 Lotus japonicus HOM05D005320 ORTHO05D007922 1.3e-104 383.3 220 84.1
CSS0000536 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 1.7e-104 382.9 200 91.5
TAR623G0888 Trochodendron aralioides HOM05D005320 ORTHO05D007922 6.4e-104 380.9 204 87.3
Sp4g20060 Schrenkiella parvula HOM05D005320 ORTHO05D007922 1.1e-103 380.2 220 82.7
DCAR_012114 Daucus carota HOM05D005320 ORTHO05D007922 2.4e-103 379.0 224 82.6
FAN02G2927 Fragaria x ananassa HOM05D005320 ORTHO05D007922 3.2e-103 378.6 220 84.1
VMungo0331G1509 Vigna mungo HOM05D005320 ORTHO05D007922 3.2e-103 378.6 214 82.7
AL4G34610 Arabidopsis lyrata HOM05D005320 ORTHO05D007922 7.1e-103 377.5 220 81.8
AT2G37680 Arabidopsis thaliana HOM05D005320 ORTHO05D007922 7.1e-103 377.5 220 81.8
BcaB06g29019 Brassica carinata HOM05D005320 ORTHO05D007922 7.1e-103 377.5 220 81.8
BcaC02g07499 Brassica carinata HOM05D005320 ORTHO05D007922 7.1e-103 377.5 220 82.3
FvH4_6g13220 Fragaria vesca HOM05D005320 ORTHO05D007922 7.1e-103 377.5 220 83.6
Thhalv10017226m.g Eutrema salsugineum HOM05D005320 ORTHO05D007922 1.2e-102 376.7 220 81.8
THA.LOC104823414 Tarenaya hassleriana HOM05D005320 ORTHO05D007922 2.7e-102 375.6 220 81.4
CARHR131860 Cardamine hirsuta HOM05D005320 ORTHO05D007922 1.7e-101 372.9 220 81.4
Eucgr.K01475 Eucalyptus grandis HOM05D005320 ORTHO05D007922 5.1e-101 371.3 241 76.8
BraA04t18363Z Brassica rapa HOM05D005320 ORTHO05D007922 8.6e-101 370.5 220 80.9
FAN14G1919 Fragaria x ananassa HOM05D005320 ORTHO05D007922 2.5e-100 369.0 204 86.8
Os03g0679000 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 7.3e-100 367.5 223 77.6
Sed0022090 Sechium edule HOM05D005320 ORTHO05D007922 7.3e-100 367.5 219 82.6
Peaxi162Scf00094g00911 Petunia axillaris HOM05D005320 ORTHO05D007922 9.5e-100 367.1 190 91.1
Carub.0004s1963 Capsella rubella HOM05D005320 ORTHO05D007922 2.1e-99 365.9 220 79.5
Os01g0144200 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 5.2e-98 361.3 223 76.2
Nitab4.5_0005100g0070 Nicotiana tabacum HOM05D005320 ORTHO05D007922 1.2e-97 360.1 194 89.7
Duzib128G0467 Durio zibethinus HOM05D005320 ORTHO05D007922 2.6e-97 359.0 192 88.5
Aa31sc70G70 Aethionema arabicum HOM05D005320 ORTHO05D007922 7.6e-97 357.5 221 79.6
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 1.7e-96 356.3 194 88.1
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 1.7e-96 356.3 215 79.1
Duzib093G0721 Durio zibethinus HOM05D005320 ORTHO05D007922 1.7e-96 356.3 192 87.5
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 1.1e-95 353.6 207 81.2
RcHm_v2.0_Chr3g0466001 Rosa chinensis HOM05D005320 ORTHO05D007922 1.4e-95 353.2 203 84.2
Oeu007799.1 Olea europaea HOM05D005320 ORTHO05D007922 2.4e-95 352.4 190 87.4
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 5.4e-95 351.3 218 77.5
FAN05G0090 Fragaria x ananassa HOM05D005320 ORTHO05D007922 1.2e-94 350.1 194 85.6
AUR62043523 Chenopodium quinoa HOM05D005320 ORTHO05D007922 1.6e-94 349.7 184 88.6
Phvul.010G015600 Phaseolus vulgaris HOM05D005320 ORTHO05D007922 1.6e-94 349.7 192 84.9
AUR62042382 Chenopodium quinoa HOM05D005320 ORTHO05D007922 7.8e-94 347.4 182 88.5
HPP92_026786 Vanilla planifolia HOM05D005320 ORTHO05D007922 8.6e-93 344.0 195 81.5
Zm00001eb124510 Zea mays HOM05D005320 ORTHO05D007922 7.6e-89 330.9 196 79.6
ATR0559G120 Amborella trichopoda HOM05D005320 ORTHO05D007922 1.7e-88 329.7 192 81.2
Mapoly0038s0068 Marchantia polymorpha HOM05D005320 ORTHO05D007922 2.4e-87 325.9 201 73.1
Pp3c6_13830 Physcomitrium patens HOM05D005320 ORTHO05D007922 9.6e-84 313.9 220 65.9
SMO356G0269 Selaginella moellendorffii HOM05D005320 ORTHO05D007922 1.6e-83 313.2 201 69.7
AagrBONN_evm.TU.Sc2ySwM_117.2668 Anthoceros agrestis HOM05D005320 ORTHO05D007922 9.9e-81 303.9 193 70.5
Hma1.2p1_0936F.1_g239015 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.3e-75 287.0 176 80.7
Hma1.2p1_1082F.1_g255160 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.3e-75 287.0 176 80.7
Cpa.g.c45575 Carica papaya HOM05D005320 ORTHO05D007922 1.2e-73 280.4 149 88.6
CBR_g30417 Chara braunii HOM05D005320 ORTHO05D007922 1.9e-71 273.1 204 62.7
Zm00001eb335820 Zea mays HOM05D005320 ORTHO05D007922 1.9e-71 273.1 149 84.6
EL10As1g23111 Beta vulgaris HOM05D005320 ORTHO05D007922 4.2e-71 271.9 135 92.6
Sabra16G0101600 Salix brachista HOM05D005320 ORTHO05D007922 4.3e-68 261.9 136 89.0
RcHm_v2.0_Chr3g0465971 Rosa chinensis HOM05D005320 ORTHO05D007922 3.8e-64 248.8 137 86.1
HPP92_000741 Vanilla planifolia HOM05D005320 ORTHO05D007922 3.3e-60 235.7 130 81.5
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 7.4e-60 234.6 125 85.6
Hma1.2p1_1082F.1_g255140 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 4.8e-59 231.9 129 86.8
RcHm_v2.0_Chr3g0465901 Rosa chinensis HOM05D005320 ORTHO05D007922 1.6e-54 216.9 148 73.0
Hma1.2p1_0766F.1_g215380 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 9.1e-50 201.1 110 88.2
HPP92_000739 Vanilla planifolia HOM05D005320 ORTHO05D007922 3.8e-40 169.1 93 84.9
RcHm_v2.0_Chr3g0465921 Rosa chinensis HOM05D005320 ORTHO05D007922 4.7e-38 162.2 93 84.9
EL10As1g23112 Beta vulgaris HOM05D005320 ORTHO05D007922 1.2e-33 147.5 82 82.9
Haze_20831 Corylus avellana HOM05D000026 ORTHO05D000094 2.6e-33 146.4 82 84.1
Cre17.g744497 Chlamydomonas reinhardtii HOM05D005320 ORTHO05D007922 2.4e-26 123.2 208 35.6
Mapoly0050s0129 Marchantia polymorpha HOM05D005320 ORTHO05D007922 7.2e-23 111.7 210 33.8
RcHm_v2.0_Chr7g0189661 Rosa chinensis HOM05D005320 ORTHO05D007922 8.5e-16 88.2 60 71.7
MELO3C003145.2 Cucumis melo HOM05D000231 ORTHO05D000132 1.2e-14 84.3 40 92.5
RcHm_v2.0_Chr4g0436891 Rosa chinensis HOM05D005320 ORTHO05D007922 7.5e-12 75.1 64 59.4
Pp3c27_5960 Physcomitrium patens HOM05D005320 ORTHO05D007922 7.8e-09 65.1 47 59.6
MD12G1146300 Malus domestica HOM05D000026 ORTHO05D000094 1.2e-06 57.8 75 45.3


User provided reference genes

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