Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049436 Camellia sinensis var. sinensis HOM05D038090 ORTHO05D033879 1.7e-60 235.7 111 100.0
CSS0004465 Camellia sinensis var. sinensis HOM05D038090 ORTHO05D033879 3.9e-33 144.8 97 72.2
CSS0008960 Camellia sinensis var. sinensis HOM05D038090 ORTHO05D033879 9.6e-24 113.6 105 60.0
CSS0032863 Camellia sinensis var. sinensis HOM05D002345 ORTHO05D002391 3.4e-21 105.1 60 83.3
Rhsim04G0106700 Rhododendron simsii HOM05D002345 ORTHO05D002391 2.2e-12 75.9 71 49.3
Actinidia17672 Actinidia chinensis HOM05D002345 ORTHO05D002391 5.0e-12 74.7 58 55.2
Manes.06G161700 Manihot esculenta HOM05D002345 ORTHO05D002391 9.4e-11 70.5 60 53.3
Hund07458 Selenicereus undatus HOM05D002345 ORTHO05D002391 1.6e-10 69.7 54 53.7
CSS0033129 Camellia sinensis var. sinensis HOM05D002345 ORTHO05D002391 2.7e-10 68.9 54 51.9
Dinv39665 Davidia involucrata HOM05D002345 ORTHO05D002391 3.6e-10 68.6 62 46.8
TWI23G0801 Tripterygium wilfordii HOM05D002345 ORTHO05D002391 3.6e-10 68.6 59 52.5
vmacro09049 Vaccinium macrocarpon HOM05D002345 ORTHO05D002391 3.6e-10 68.6 56 57.1
Ca_22959_v3 Cicer arietinum L. HOM05D002345 ORTHO05D002391 4.6e-10 68.2 65 44.6
Dinv18676 Davidia involucrata HOM05D002345 ORTHO05D002391 4.6e-10 68.2 55 50.9
Phvul.001G129000 Phaseolus vulgaris HOM05D002345 ORTHO05D002391 4.6e-10 68.2 64 48.4
GSVIVG01005044001 Vitis vinifera HOM05D002345 ORTHO05D002391 4.6e-10 68.2 55 50.9
Eucgr.J00737 Eucalyptus grandis HOM05D002345 ORTHO05D002391 6.1e-10 67.8 54 53.7
Ciclev10014072m.g Citrus clementina HOM05D002345 ORTHO05D002391 7.9e-10 67.4 53 54.7
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 7.9e-10 67.4 54 50.0
Atru.chr3.2636 Acer truncatum HOM05D002345 ORTHO05D002391 1.0e-09 67.0 53 54.7
TAR633G1899 Trochodendron aralioides HOM05D002345 ORTHO05D002391 1.0e-09 67.0 53 54.7
Migut.N02348 Erythranthe guttata HOM05D002345 ORTHO05D002391 1.4e-09 66.6 54 51.9
Glyma.03G133500 Glycine max HOM05D002345 ORTHO05D002391 1.4e-09 66.6 64 48.4
Cfa016771 Carpinus fangiana HOM05D002345 ORTHO05D002391 1.8e-09 66.2 58 48.3
Actinidia16350 Actinidia chinensis HOM05D002345 ORTHO05D002391 2.3e-09 65.9 53 49.1
Lalb_Chr01g0017251 Lupinus albus HOM05D002345 ORTHO05D002391 2.3e-09 65.9 60 46.7
Potri.016G043900 Populus trichocarpa HOM05D002345 ORTHO05D002391 2.3e-09 65.9 61 45.9
VMungo1383G2869 Vigna mungo HOM05D002345 ORTHO05D002391 2.3e-09 65.9 58 48.3
COL.COLO4_36472 Corchorus olitorius HOM05D002345 ORTHO05D002391 3.0e-09 65.5 57 52.6
Duzib150G0243 Durio zibethinus HOM05D002345 ORTHO05D002391 3.0e-09 65.5 57 54.4
MSTRG.12456 Avicennia marina HOM05D002345 ORTHO05D002391 3.9e-09 65.1 53 50.9
PSO384G2553 Papaver somniferum HOM05D002345 ORTHO05D002391 3.9e-09 65.1 65 47.7
TWI53G0447 Tripterygium wilfordii HOM05D002345 ORTHO05D002391 3.9e-09 65.1 55 50.9
GSVIVG01031545001 Vitis vinifera HOM05D002345 ORTHO05D002391 3.9e-09 65.1 52 53.8
CiPaw.10G035900 Carya illinoinensis HOM05D002345 ORTHO05D002391 5.1e-09 64.7 58 46.6
Gorai.006G135000 Gossypium raimondii HOM05D002345 ORTHO05D002391 5.1e-09 64.7 57 52.6
Lalb_Chr20g0110451 Lupinus albus HOM05D002345 ORTHO05D002391 5.1e-09 64.7 60 43.3
MD03G1171100 Malus domestica HOM05D002345 ORTHO05D002391 5.1e-09 64.7 52 51.9
Potri.006G047700 Populus trichocarpa HOM05D002345 ORTHO05D002391 5.1e-09 64.7 61 45.9
vmacro04122 Vaccinium macrocarpon HOM05D002345 ORTHO05D002391 5.1e-09 64.7 54 51.9
CANSAT54G0547 Cannabis sativa HOM05D002345 ORTHO05D002391 6.7e-09 64.3 53 50.9
CARHR200670 Cardamine hirsuta HOM05D002345 ORTHO05D002391 6.7e-09 64.3 57 45.6
Thhalv10012476m.g Eutrema salsugineum HOM05D002345 ORTHO05D002391 6.7e-09 64.3 57 45.6
Gohir.D09G116700 Gossypium hirsutum HOM05D002345 ORTHO05D002391 6.7e-09 64.3 57 52.6
Medtr7g090940 Medicago truncatula HOM05D002345 ORTHO05D002391 6.7e-09 64.3 66 42.4
Nn7g36421 Nelumbo nucifera HOM05D002345 ORTHO05D002391 6.7e-09 64.3 53 54.7
Thecc.05G146700 Theobroma cacao HOM05D002345 ORTHO05D002391 6.7e-09 64.3 59 49.2
Lj1g0015841 Lotus japonicus HOM05D002345 ORTHO05D002391 8.8e-09 63.9 64 45.3
RcHm_v2.0_Chr5g0053371 Rosa chinensis HOM05D002345 ORTHO05D002391 8.8e-09 63.9 65 47.7
CDE02G1395 Ceratophyllum demersum HOM05D002345 ORTHO05D002391 1.1e-08 63.5 56 46.4
Cc01_g06230 Coffea canephora HOM05D002345 ORTHO05D002391 1.1e-08 63.5 53 49.1
Prupe.4G255700 Prunus persica HOM05D002345 ORTHO05D002391 1.1e-08 63.5 53 49.1
Prupe.7G052600 Prunus persica HOM05D002345 ORTHO05D002391 1.1e-08 63.5 57 47.4
AL6G23250 Arabidopsis lyrata HOM05D002345 ORTHO05D002391 1.5e-08 63.2 57 43.9
AT5G12430 Arabidopsis thaliana HOM05D002345 ORTHO05D002391 1.5e-08 63.2 57 43.9
BcaB08g37002 Brassica carinata HOM05D002345 ORTHO05D002391 1.5e-08 63.2 57 43.9
TPR.G18235 Trifolium pratense HOM05D002345 ORTHO05D002391 1.5e-08 63.2 66 40.9
VMungo1215G2642 Vigna mungo HOM05D002345 ORTHO05D002391 1.5e-08 63.2 54 44.4
FvH4_3g28360 Fragaria vesca HOM05D002345 ORTHO05D002391 1.9e-08 62.8 65 44.6
FAN25G1021 Fragaria x ananassa HOM05D002345 ORTHO05D002391 1.9e-08 62.8 65 44.6
Gohir.D05G073300 Gossypium hirsutum HOM05D002345 ORTHO05D002391 1.9e-08 62.8 62 45.2
Gorai.009G074200 Gossypium raimondii HOM05D002345 ORTHO05D002391 1.9e-08 62.8 62 45.2
MD12G1083200 Malus domestica HOM05D002345 ORTHO05D002391 1.9e-08 62.8 48 54.2
Sp6g31200 Schrenkiella parvula HOM05D002345 ORTHO05D002391 1.9e-08 62.8 57 43.9
ATR0721G063 Amborella trichopoda HOM05D002345 ORTHO05D002391 2.5e-08 62.4 65 41.5
CiPaw.13G154100 Carya illinoinensis HOM05D002345 ORTHO05D002391 2.5e-08 62.4 48 54.2
FAN16G0559 Fragaria x ananassa HOM05D002345 ORTHO05D002391 2.5e-08 62.4 65 43.1
Gohir.D13G220800 Gossypium hirsutum HOM05D002345 ORTHO05D002391 2.5e-08 62.4 59 49.2
Gorai.013G251800 Gossypium raimondii HOM05D002345 ORTHO05D002391 2.5e-08 62.4 59 49.2
PSO170G6613 Papaver somniferum HOM05D002345 ORTHO05D002391 2.5e-08 62.4 54 51.9
VMungo1127G2235 Vigna mungo HOM05D002345 ORTHO05D002391 2.5e-08 62.4 52 48.1
A10p25400 Brassica napus HOM05D002345 ORTHO05D002391 3.3e-08 62.0 57 42.1
C09p64460 Brassica napus HOM05D002345 ORTHO05D002391 3.3e-08 62.0 57 42.1
BolC9t59281H Brassica oleracea HOM05D002345 ORTHO05D002391 3.3e-08 62.0 57 42.1
BraA10t44604Z Brassica rapa HOM05D002345 ORTHO05D002391 3.3e-08 62.0 57 42.1
Gohir.A05G070300 Gossypium hirsutum HOM05D002345 ORTHO05D002391 3.3e-08 62.0 62 45.2
Gohir.A09G120600 Gossypium hirsutum HOM05D002345 ORTHO05D002391 3.3e-08 62.0 51 54.9
MD03G1171300 Malus domestica HOM05D002345 ORTHO05D002391 3.3e-08 62.0 52 50.0
Manes.09G010500 Manihot esculenta HOM05D002345 ORTHO05D002391 3.3e-08 62.0 58 44.8
RcHm_v2.0_Chr3g0483931 Rosa chinensis HOM05D002345 ORTHO05D002391 3.3e-08 62.0 61 45.9
Solyc11g065260.3 Solanum lycopersicum HOM05D002345 ORTHO05D002391 3.3e-08 62.0 50 54.0
Sopen11g025010 Solanum pennellii HOM05D002345 ORTHO05D002391 3.3e-08 62.0 50 54.0
TAR623G1330 Trochodendron aralioides HOM05D002345 ORTHO05D002391 3.3e-08 62.0 53 50.9
Carub.0006s1094 Capsella rubella HOM05D002345 ORTHO05D002391 4.3e-08 61.6 57 42.1
Cpa.g.c28807 Carica papaya HOM05D002345 ORTHO05D002391 4.3e-08 61.6 61 44.3
AUR62039852 Chenopodium quinoa HOM05D002345 ORTHO05D002391 4.3e-08 61.6 50 50.0
Dinv36221 Davidia involucrata HOM05D002345 ORTHO05D002391 4.3e-08 61.6 51 51.0
Duzib168G0282 Durio zibethinus HOM05D002345 ORTHO05D002391 4.3e-08 61.6 52 51.9
FAN21G1575 Fragaria x ananassa HOM05D002345 ORTHO05D002391 4.3e-08 61.6 65 43.1
Gohir.A13G217200 Gossypium hirsutum HOM05D002345 ORTHO05D002391 4.3e-08 61.6 55 49.1
Sabra06G0033200 Salix brachista HOM05D002345 ORTHO05D002391 4.3e-08 61.6 61 42.6
AUR62000161 Chenopodium quinoa HOM05D002345 ORTHO05D002391 5.7e-08 61.2 50 50.0
Ciclev10004152m.g Citrus clementina HOM05D002345 ORTHO05D002391 5.7e-08 61.2 54 48.1
PSO339G4712 Papaver somniferum HOM05D002345 ORTHO05D002391 5.7e-08 61.2 50 52.0
Dinv18677 Davidia involucrata HOM05D002345 ORTHO05D002391 7.4e-08 60.8 68 47.1
FAN11G2479 Fragaria x ananassa HOM05D002345 ORTHO05D002391 7.4e-08 60.8 62 45.2
QL01p003745 Quercus lobata HOM05D002345 ORTHO05D002391 7.4e-08 60.8 61 47.5
Thecc.09G240500 Theobroma cacao HOM05D002345 ORTHO05D002391 7.4e-08 60.8 55 47.3
Duzib128G1443 Durio zibethinus HOM05D002345 ORTHO05D002391 9.7e-08 60.5 57 43.9
Glyma.11G095300 Glycine max HOM05D002345 ORTHO05D002391 9.7e-08 60.5 52 46.2
ClCG02G023110 Citrullus lanatus HOM05D002345 ORTHO05D002391 1.3e-07 60.1 53 50.9
MELO3C014576.2 Cucumis melo HOM05D002345 ORTHO05D002391 1.3e-07 60.1 53 50.9
CsaV3_6G039170 Cucumis sativus L. HOM05D002345 ORTHO05D002391 1.3e-07 60.1 53 50.9
CANSAT80G0360 Cannabis sativa HOM05D002345 ORTHO05D002391 1.7e-07 59.7 61 42.6
PSO528G0041 Papaver somniferum HOM05D002345 ORTHO05D002391 1.7e-07 59.7 54 50.0
QL07p004010 Quercus lobata HOM05D002345 ORTHO05D002391 1.7e-07 59.7 51 49.0
Sed0010554 Sechium edule HOM05D002345 ORTHO05D002391 1.7e-07 59.7 63 42.9
arahy.Tifrunner.gnm1.ann1.9U9RT1 Arachis hypogaea HOM05D002345 ORTHO05D002391 2.2e-07 59.3 64 43.8
EL10Ac4g10190 Beta vulgaris HOM05D002345 ORTHO05D002391 2.2e-07 59.3 54 44.4
AUR62024519 Chenopodium quinoa HOM05D002345 ORTHO05D002391 2.2e-07 59.3 56 50.0
Migut.J01715 Erythranthe guttata HOM05D002345 ORTHO05D002391 2.2e-07 59.3 68 38.2
Nitab4.5_0011829g0020 Nicotiana tabacum HOM05D002345 ORTHO05D002391 2.2e-07 59.3 50 50.0
Lsat_1_v5_gn_1_49481 Lactuca sativa HOM05D002345 ORTHO05D002391 2.8e-07 58.9 52 50.0
Psat3g074680 Pisum sativum HOM05D002345 ORTHO05D002391 2.8e-07 58.9 66 39.4
PGR119G0483 Punica granatum HOM05D002345 ORTHO05D002391 2.8e-07 58.9 61 41.0
CiPaw.09G040800 Carya illinoinensis HOM05D002345 ORTHO05D002391 3.7e-07 58.5 57 45.6
FvH4_6g24600 Fragaria vesca HOM05D002345 ORTHO05D002391 3.7e-07 58.5 61 42.6
FAN14G3366 Fragaria x ananassa HOM05D002345 ORTHO05D002391 3.7e-07 58.5 61 42.6
Lj3g0023990 Lotus japonicus HOM05D002345 ORTHO05D002391 3.7e-07 58.5 59 40.7
Ah.06g193830 Amaranthus hybridus HOM05D002345 ORTHO05D002391 4.8e-07 58.2 50 48.0
arahy.Tifrunner.gnm1.ann1.D7XUPH Arachis hypogaea HOM05D002345 ORTHO05D002391 4.8e-07 58.2 68 39.7
arahy.Tifrunner.gnm1.ann1.XW46IK Arachis hypogaea HOM05D002345 ORTHO05D002391 4.8e-07 58.2 68 39.7
AUR62026110 Chenopodium quinoa HOM05D002345 ORTHO05D002391 4.8e-07 58.2 56 48.2
FAN20G2389 Fragaria x ananassa HOM05D002345 ORTHO05D002391 4.8e-07 58.2 58 44.8
Lalb_Chr19g0139711 Lupinus albus HOM05D002345 ORTHO05D002391 4.8e-07 58.2 51 45.1
Eucgr.K01572 Eucalyptus grandis HOM05D002345 ORTHO05D002391 6.3e-07 57.8 58 43.1
Atru.chr1.1208 Acer truncatum HOM05D002345 ORTHO05D002391 8.2e-07 57.4 51 47.1
CsaV3_4G027740 Cucumis sativus L. HOM05D002345 ORTHO05D002391 8.2e-07 57.4 64 35.9
FvH4_2g04200 Fragaria vesca HOM05D002345 ORTHO05D002391 8.2e-07 57.4 52 50.0
FAN15G2324 Fragaria x ananassa HOM05D002345 ORTHO05D002391 8.2e-07 57.4 52 50.0
FAN24G2659 Fragaria x ananassa HOM05D003981 ORTHO05D003666 8.2e-07 57.4 52 50.0
Phvul.002G034200 Phaseolus vulgaris HOM05D002345 ORTHO05D002391 8.2e-07 57.4 54 42.6
Potri.009G050200 Populus trichocarpa HOM05D002345 ORTHO05D002391 8.2e-07 57.4 53 45.3
CAN.G71.12 Capsicum annuum HOM05D002345 ORTHO05D002391 1.1e-06 57.0 50 50.0
Glyma.12G021400 Glycine max HOM05D002345 ORTHO05D002391 1.1e-06 57.0 52 44.2
Sed0021172 Sechium edule HOM05D002345 ORTHO05D002391 1.1e-06 57.0 58 37.9
TPR.G22571 Trifolium pratense HOM05D002345 ORTHO05D002391 1.1e-06 57.0 51 45.1
unitig_699.g19139 Utricularia gibba HOM05D002345 ORTHO05D002391 1.1e-06 57.0 44 54.5
Phvul.011G078000 Phaseolus vulgaris HOM05D002345 ORTHO05D002391 1.4e-06 56.6 52 44.2
Hund24664 Selenicereus undatus HOM05D002345 ORTHO05D002391 1.4e-06 56.6 68 38.2
ClCG04G003800 Citrullus lanatus HOM05D002345 ORTHO05D002391 1.8e-06 56.2 54 42.6
Ah.04g151410 Amaranthus hybridus HOM05D002345 ORTHO05D002391 2.4e-06 55.8 55 43.6
SGA_v2.0_scaffold42G16079 Striga asiatica HOM05D002345 ORTHO05D002391 2.4e-06 55.8 61 39.3
THA.LOC104817287 Tarenaya hassleriana HOM05D002345 ORTHO05D002391 2.4e-06 55.8 71 40.8
ECA233G2233 Erigeron canadensis HOM05D002345 ORTHO05D002391 3.1e-06 55.5 54 44.4
HanXRQChr13g0401431 Helianthus annuus HOM05D002345 ORTHO05D002391 3.1e-06 55.5 44 52.3
Mapoly0004s0049 Marchantia polymorpha HOM05D002345 ORTHO05D002391 3.1e-06 55.5 60 36.7
Sabra16G0157100 Salix brachista HOM05D002345 ORTHO05D002391 3.1e-06 55.5 53 43.4
SGA_v2.0_scaffold69G23126 Striga asiatica HOM05D002345 ORTHO05D002391 3.1e-06 55.5 64 40.6
Ca_11250_v3 Cicer arietinum L. HOM05D002345 ORTHO05D002391 4.1e-06 55.1 51 43.1
MELO3C026324.2 Cucumis melo HOM05D002345 ORTHO05D002391 4.1e-06 55.1 64 35.9
Peaxi162Scf00130g00930 Petunia axillaris HOM05D002345 ORTHO05D002391 4.1e-06 55.1 57 40.4
Hund15355 Selenicereus undatus HOM05D002345 ORTHO05D002391 4.1e-06 55.1 68 36.8
RcHm_v2.0_Chr6g0253551 Rosa chinensis HOM05D002345 ORTHO05D002391 5.3e-06 54.7 46 50.0
Sabra16G0048700 Salix brachista HOM05D002345 ORTHO05D002391 5.3e-06 54.7 73 37.0
SalBow6G5137 Salvia bowleyana HOM05D002345 ORTHO05D002391 5.3e-06 54.7 58 39.7
EL10Ac3g07147 Beta vulgaris HOM05D002345 ORTHO05D002391 6.9e-06 54.3 55 41.8
HanXRQChr11g0351561 Helianthus annuus HOM05D002345 ORTHO05D002391 6.9e-06 54.3 44 47.7
Aa31LG3G14810 Aethionema arabicum HOM05D002345 ORTHO05D002391 9.1e-06 53.9 51 41.2
Lalb_Chr01g0001141 Lupinus albus HOM05D002345 ORTHO05D002391 9.1e-06 53.9 51 43.1
Medtr4g076240 Medicago truncatula HOM05D002345 ORTHO05D002391 9.1e-06 53.9 51 43.1


User provided reference genes

Program Settings