Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.4e-155 551.6 275 100.0
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.9e-127 458.4 264 89.8
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.8e-125 452.2 264 88.6
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 1.6e-120 436.4 258 85.3
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.7e-120 435.6 264 83.0
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 1.0e-119 433.7 270 82.6
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.0e-119 432.2 277 83.8
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 5.2e-119 431.4 261 83.1
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 1.5e-118 429.9 264 82.6
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 1.5e-118 429.9 261 82.0
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 2.0e-118 429.5 261 82.8
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 9.8e-118 427.2 264 83.0
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 2.8e-117 425.6 261 82.0
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 2.8e-117 425.6 261 82.8
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 3.7e-117 425.2 261 83.5
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 4.8e-117 424.9 267 79.0
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 4.8e-117 424.9 267 79.0
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 1.1e-116 423.7 264 80.7
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 1.4e-116 423.3 267 79.4
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 2.4e-116 422.5 265 80.4
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 4.1e-116 421.8 261 80.5
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 1.6e-115 419.9 267 79.0
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 2.0e-115 419.5 264 78.8
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 2.0e-115 419.5 270 77.4
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 1.7e-114 416.4 261 80.1
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 2.2e-114 416.0 260 79.2
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 3.8e-114 415.2 259 79.5
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 3.8e-114 415.2 261 78.2
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 5.0e-114 414.8 261 79.3
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 6.5e-114 414.5 261 79.7
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 6.5e-114 414.5 264 78.0
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 6.5e-114 414.5 264 78.0
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 1.1e-113 413.7 260 79.6
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 3.2e-113 412.1 262 79.4
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 4.2e-113 411.8 257 80.2
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 5.5e-113 411.4 261 78.9
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 5.5e-113 411.4 261 80.1
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.2e-112 410.2 257 80.5
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.2e-112 410.2 259 78.8
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.6e-112 409.8 259 79.2
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 1.6e-112 409.8 259 78.4
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 3.6e-112 408.7 261 78.9
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 4.7e-112 408.3 262 79.4
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 4.7e-112 408.3 261 76.6
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 6.1e-112 407.9 262 78.6
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 8.0e-112 407.5 257 78.6
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 8.0e-112 407.5 271 77.1
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 8.0e-112 407.5 261 78.5
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 3.0e-111 405.6 259 76.4
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 3.0e-111 405.6 258 78.7
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 8.8e-111 404.1 261 77.4
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 1.5e-110 403.3 257 79.4
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 2.6e-110 402.5 261 77.0
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 2.6e-110 402.5 270 75.6
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 2.6e-110 402.5 261 76.6
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 1.3e-109 400.2 258 76.4
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 2.2e-109 399.4 258 76.4
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 2.8e-109 399.1 258 76.4
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 2.8e-109 399.1 261 75.9
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 2.8e-109 399.1 269 75.8
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 3.7e-109 398.7 261 75.9
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 6.3e-109 397.9 267 73.8
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 6.3e-109 397.9 258 76.0
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 1.1e-108 397.1 265 74.0
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 1.1e-108 397.1 258 76.4
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 1.4e-108 396.7 258 76.4
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 2.4e-108 396.0 267 76.0
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 4.1e-108 395.2 261 75.1
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 5.4e-108 394.8 273 72.2
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 7.0e-108 394.4 261 73.9
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 7.0e-108 394.4 261 75.9
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 9.1e-108 394.0 261 75.5
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 1.2e-107 393.7 273 73.3
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 1.2e-107 393.7 260 73.8
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 1.6e-107 393.3 261 75.1
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 1.6e-107 393.3 258 77.1
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 3.5e-107 392.1 262 76.3
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 5.9e-107 391.3 273 74.7
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 7.7e-107 391.0 260 74.2
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 1.0e-106 390.6 258 75.6
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 1.3e-106 390.2 260 74.2
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 1.7e-106 389.8 269 74.3
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 1.7e-106 389.8 258 76.7
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 5.0e-106 388.3 262 74.4
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 8.6e-106 387.5 260 73.1
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 1.5e-105 386.7 261 73.2
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 4.2e-105 385.2 261 73.6
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 5.5e-105 384.8 267 73.4
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 9.5e-105 384.0 289 73.4
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 9.5e-105 384.0 271 70.1
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 1.6e-104 383.3 261 72.8
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 2.1e-104 382.9 277 71.8
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 2.8e-104 382.5 261 72.8
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 2.3e-103 379.4 261 72.0
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 2.3e-103 379.4 261 72.0
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 5.2e-103 378.3 237 80.6
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 6.8e-103 377.9 256 73.8
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 1.5e-102 376.7 258 74.8
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 2.6e-102 375.9 263 69.6
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 2.6e-102 375.9 240 80.0
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 3.4e-102 375.6 261 69.7
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 7.5e-102 374.4 261 72.4
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 1.3e-101 373.6 258 73.3
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 2.9e-101 372.5 263 71.9
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 3.7e-101 372.1 286 68.9
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 4.9e-101 371.7 263 71.9
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 8.3e-101 370.9 263 71.5
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 1.1e-100 370.5 271 70.8
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.8e-100 369.8 241 78.0
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 1.2e-99 367.1 258 72.1
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.6e-99 366.7 277 73.6
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 2.0e-99 366.3 258 71.7
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 2.7e-99 365.9 258 71.7
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 3.5e-99 365.5 260 71.5
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 1.0e-98 364.0 258 71.7
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 1.0e-98 364.0 258 71.7
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 2.9e-98 362.5 258 71.3
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 3.9e-98 362.1 256 71.1
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 2.0e-94 349.7 248 72.6
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 4.9e-93 345.1 256 68.8
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 3.2e-92 342.4 257 66.9
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 4.1e-92 342.0 230 76.1
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 1.6e-91 340.1 268 64.2
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 1.6e-91 340.1 254 70.9
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 7.8e-91 337.8 248 70.2
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 1.7e-90 336.7 245 71.4
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 3.9e-90 335.5 258 68.2
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 2.5e-89 332.8 234 73.9
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 1.7e-82 310.1 213 75.6
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 1.4e-76 290.4 306 51.0
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 1.2e-75 287.3 258 58.1
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 1.6e-75 287.0 256 60.5
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 7.1e-68 261.5 172 80.8
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 4.2e-60 235.7 258 52.3
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.6e-59 233.8 248 56.0
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 3.5e-59 232.6 174 70.7
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 9.6e-57 224.6 187 63.1
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.6e-48 197.2 191 58.1
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 4.8e-48 195.7 119 78.2
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 4.8e-40 169.1 240 46.2
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 5.5e-36 155.6 141 62.4
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 3.8e-29 132.9 163 47.9
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 1.1e-25 121.3 120 57.5
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 2.3e-18 97.1 131 50.4
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 2.0e-14 84.0 48 77.1
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.0e-13 79.3 52 65.4
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.0e-13 79.3 52 65.4
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 4.7e-11 72.8 51 66.7
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 4.4e-09 66.2 37 83.8


User provided reference genes

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