Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049411 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 4.0e-136 488.0 234 100.0
CSS0045284 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 7.0e-125 450.7 231 93.9
CSS0043425 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 7.7e-124 447.2 231 93.5
CSS0006186 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 3.7e-110 401.7 231 85.3
CSS0027256 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 4.3e-106 388.3 231 84.0
CSS0013970 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 4.0e-104 381.7 216 85.6
Rhsim09G0099700 Rhododendron simsii HOM05D003933 ORTHO05D004746 1.0e-99 367.1 232 76.7
Actinidia14952 Actinidia chinensis HOM05D003933 ORTHO05D004746 7.3e-98 360.9 233 75.5
Cc11_g08880 Coffea canephora HOM05D003933 ORTHO05D004746 2.3e-96 355.9 231 70.1
vmacro10631 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 4.0e-96 355.1 234 72.6
vmacro10628 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 1.9e-93 346.3 234 70.9
QL05p009967 Quercus lobata HOM05D003933 ORTHO05D004746 2.4e-93 345.9 227 73.1
CAN.G107.7 Capsicum annuum HOM05D003933 ORTHO05D004746 9.2e-93 344.0 230 70.9
CiPaw.06G061200 Carya illinoinensis HOM05D003933 ORTHO05D004746 3.5e-92 342.0 229 70.7
PGSC0003DMG402011550 Solanum tuberosum HOM05D003933 ORTHO05D004746 4.6e-92 341.7 229 70.7
Nitab4.5_0000569g0090 Nicotiana tabacum HOM05D003933 ORTHO05D004746 7.8e-92 340.9 231 69.7
TWI77G0671 Tripterygium wilfordii HOM05D003933 ORTHO05D004746 7.8e-92 340.9 229 69.0
Haze_11764 Corylus avellana HOM05D003933 ORTHO05D004746 1.3e-91 340.1 230 71.3
Cfa008748 Carpinus fangiana HOM05D003933 ORTHO05D004746 1.7e-91 339.7 230 70.9
Potri.005G092000 Populus trichocarpa HOM05D003933 ORTHO05D004746 1.7e-91 339.7 229 71.6
Sabra05G0076300 Salix brachista HOM05D003933 ORTHO05D004746 1.7e-91 339.7 229 71.2
Solyc12g088450.3 Solanum lycopersicum HOM05D003933 ORTHO05D004746 1.7e-91 339.7 231 70.1
Nitab4.5_0003643g0030 Nicotiana tabacum HOM05D003933 ORTHO05D004746 2.3e-91 339.3 231 70.1
Sopen12g030430 Solanum pennellii HOM05D003933 ORTHO05D004746 2.3e-91 339.3 231 70.1
Duzib277G0001 Durio zibethinus HOM05D003933 ORTHO05D004746 3.0e-91 339.0 231 69.7
Thecc.02G159300 Theobroma cacao HOM05D003933 ORTHO05D004746 3.9e-91 338.6 229 69.0
DCAR_007284 Daucus carota HOM05D003933 ORTHO05D004746 5.1e-91 338.2 229 69.0
Duzib132G1110 Durio zibethinus HOM05D003933 ORTHO05D004746 5.1e-91 338.2 231 69.7
COL.COLO4_08591 Corchorus olitorius HOM05D003933 ORTHO05D004746 6.6e-91 337.8 231 69.7
TAR629G2222 Trochodendron aralioides HOM05D003933 ORTHO05D004746 8.6e-91 337.4 229 70.3
Prupe.1G348200 Prunus persica HOM05D003933 ORTHO05D004746 1.5e-90 336.7 229 68.6
Lj6A748G52 Lonicera japonica HOM05D003933 ORTHO05D004746 1.9e-90 336.3 231 70.6
Manes.08G053300 Manihot esculenta HOM05D003933 ORTHO05D004746 1.9e-90 336.3 229 70.3
Gohir.A13G060600 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.6e-89 333.2 231 68.8
MD13G1004400 Malus domestica HOM05D003933 ORTHO05D004746 1.6e-89 333.2 229 67.7
DCAR_030211 Daucus carota HOM05D003933 ORTHO05D004746 2.1e-89 332.8 231 70.1
Gorai.013G069800 Gossypium raimondii HOM05D003933 ORTHO05D004746 2.1e-89 332.8 231 68.8
SalBow8G0218 Salvia bowleyana HOM05D003933 ORTHO05D004746 2.1e-89 332.8 231 66.7
Atru.chr11.1157 Acer truncatum HOM05D003933 ORTHO05D004746 2.8e-89 332.4 229 69.0
RcHm_v2.0_Chr4g0446781 Rosa chinensis HOM05D003933 ORTHO05D004746 2.8e-89 332.4 229 68.1
Duzib248G0690 Durio zibethinus HOM05D003933 ORTHO05D004746 1.1e-88 330.5 231 67.5
ECA234G4145 Erigeron canadensis HOM05D003933 ORTHO05D004746 1.1e-88 330.5 232 68.5
Migut.L00761 Erythranthe guttata HOM05D003933 ORTHO05D004746 1.1e-88 330.5 234 65.4
FAN07G0849 Fragaria x ananassa HOM05D003933 ORTHO05D004746 1.8e-88 329.7 229 67.7
SGA_v2.0_scaffold38G15064 Striga asiatica HOM05D003933 ORTHO05D004746 4.0e-88 328.6 232 66.4
FvH4_4g36990 Fragaria vesca HOM05D003933 ORTHO05D004746 5.2e-88 328.2 229 67.2
Eucgr.J00872 Eucalyptus grandis HOM05D003933 ORTHO05D004746 6.9e-88 327.8 229 68.1
Manes.09G017800 Manihot esculenta HOM05D003933 ORTHO05D004746 6.9e-88 327.8 230 70.0
MSTRG.890 Avicennia marina HOM05D003933 ORTHO05D004746 8.9e-88 327.4 231 65.8
Nitab4.5_0004707g0060 Nicotiana tabacum HOM05D003933 ORTHO05D004746 8.9e-88 327.4 227 66.5
Peaxi162Scf00160g00123 Petunia axillaris HOM05D003933 ORTHO05D004746 8.9e-88 327.4 231 67.5
Gohir.D13G061300 Gossypium hirsutum HOM05D003933 ORTHO05D004746 2.6e-87 325.9 231 68.0
ClCG10G012050 Citrullus lanatus HOM05D003933 ORTHO05D004746 3.4e-87 325.5 231 68.8
PSO063G7666 Papaver somniferum HOM05D003933 ORTHO05D004746 3.4e-87 325.5 230 68.7
Cpa.g.sc0.130 Carica papaya HOM05D003933 ORTHO05D004746 5.8e-87 324.7 230 67.8
PSO782G2797 Papaver somniferum HOM05D003933 ORTHO05D004746 1.3e-86 323.6 230 68.3
CsaV3_3G031790 Cucumis sativus L. HOM05D003933 ORTHO05D004746 1.7e-86 323.2 231 66.7
CANSAT78G0638 Cannabis sativa HOM05D003933 ORTHO05D004746 2.2e-86 322.8 230 66.1
Ciclev10031732m.g Citrus clementina HOM05D003933 ORTHO05D004746 2.2e-86 322.8 229 68.6
HanXRQChr12g0377651 Helianthus annuus HOM05D003933 ORTHO05D004746 2.2e-86 322.8 232 67.2
Aqoxy5G00269 Aquilegia oxysepala HOM05D003933 ORTHO05D004746 2.9e-86 322.4 229 65.9
MELO3C024011.2 Cucumis melo HOM05D003933 ORTHO05D004746 2.9e-86 322.4 231 66.2
Peaxi162Scf00081g01011 Petunia axillaris HOM05D003933 ORTHO05D004746 1.4e-85 320.1 225 65.8
MBI06_g32507_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 4.2e-85 318.5 229 65.5
Nitab4.5_0000934g0120 Nicotiana tabacum HOM05D003933 ORTHO05D004746 4.2e-85 318.5 227 64.3
PGR142G4240 Punica granatum HOM05D003933 ORTHO05D004746 5.4e-85 318.2 229 65.9
AUR62032977 Chenopodium quinoa HOM05D003933 ORTHO05D004746 9.3e-85 317.4 231 63.6
CARHR190340 Cardamine hirsuta HOM05D003933 ORTHO05D004746 1.6e-84 316.6 229 69.0
THA.LOC104800863 Tarenaya hassleriana HOM05D003933 ORTHO05D004746 2.1e-84 316.2 229 67.2
Lsat_1_v5_gn_4_15060 Lactuca sativa HOM05D003933 ORTHO05D004746 7.8e-84 314.3 237 64.1
AL6G34400 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 1.0e-83 313.9 229 69.0
Sed0001276 Sechium edule HOM05D003933 ORTHO05D004746 1.3e-83 313.5 232 65.1
Aa31LG3G18300 Aethionema arabicum HOM05D003933 ORTHO05D004746 1.7e-83 313.2 231 66.2
Hund08600 Selenicereus undatus HOM05D003933 ORTHO05D004746 1.7e-83 313.2 232 64.2
EL10Ac9g22955 Beta vulgaris HOM05D003933 ORTHO05D004746 1.1e-82 310.5 231 64.9
Medtr1g037570 Medicago truncatula HOM05D003933 ORTHO05D004746 3.3e-82 308.9 229 64.6
AT5G23200 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 4.3e-82 308.5 228 67.5
Hma1.2p1_0933F.1_g238310 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 4.3e-82 308.5 236 63.6
Hma1.2p1_2428F.1_g321995 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 4.3e-82 308.5 236 63.6
TPR.G29790 Trifolium pratense HOM05D003933 ORTHO05D004746 4.3e-82 308.5 229 65.1
C07p44350 Brassica napus HOM05D003933 ORTHO05D004746 9.6e-82 307.4 229 67.2
BolC7t44956H Brassica oleracea HOM05D003933 ORTHO05D004746 9.6e-82 307.4 229 67.2
Psat6g135760 Pisum sativum HOM05D003933 ORTHO05D004746 9.6e-82 307.4 229 63.3
arahy.Tifrunner.gnm1.ann1.2XRJ77 Arachis hypogaea HOM05D003933 ORTHO05D004746 1.3e-81 307.0 231 63.6
Lalb_Chr10g0094951 Lupinus albus HOM05D003933 ORTHO05D004746 1.3e-81 307.0 229 64.6
arahy.Tifrunner.gnm1.ann1.J5HH0A Arachis hypogaea HOM05D003933 ORTHO05D004746 1.6e-81 306.6 231 63.6
Carub.0006s2098 Capsella rubella HOM05D003933 ORTHO05D004746 1.6e-81 306.6 229 67.7
BraA03t13757Z Brassica rapa HOM05D003933 ORTHO05D004746 4.8e-81 305.1 231 66.2
Thhalv10004353m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 4.8e-81 305.1 231 67.1
Glyma.09G282800 Glycine max HOM05D003933 ORTHO05D004746 6.2e-81 304.7 228 64.5
A03p46330 Brassica napus HOM05D003933 ORTHO05D004746 1.1e-80 303.9 231 65.8
Os02g0634600 Oryza sativa ssp. japonica HOM05D003933 ORTHO05D004746 1.8e-80 303.1 230 61.3
Sp2g23940 Schrenkiella parvula HOM05D003933 ORTHO05D004746 1.8e-80 303.1 231 67.1
CAN.G1054.19 Capsicum annuum HOM05D003933 ORTHO05D004746 5.3e-80 301.6 225 63.6
Zm00001eb248160 Zea mays HOM05D003933 ORTHO05D004746 1.2e-79 300.4 227 63.4
Phvul.003G004900 Phaseolus vulgaris HOM05D003933 ORTHO05D004746 2.0e-79 299.7 230 62.6
VMungo0251G2024 Vigna mungo HOM05D003933 ORTHO05D004746 3.4e-79 298.9 229 63.3
unitig_26.g10014 Utricularia gibba HOM05D003933 ORTHO05D004746 2.9e-78 295.8 231 61.5
Solyc04g078160.4 Solanum lycopersicum HOM05D003933 ORTHO05D004746 2.4e-77 292.7 228 62.3
Ca_07914_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 5.4e-77 291.6 229 60.3
PGSC0003DMG400021516 Solanum tuberosum HOM05D003933 ORTHO05D004746 2.1e-76 289.7 227 62.1
Lj2g0026122 Lotus japonicus HOM05D003933 ORTHO05D004746 3.5e-76 288.9 229 60.3
Sopen04g031790 Solanum pennellii HOM05D003933 ORTHO05D004746 1.1e-74 283.9 228 61.4
Potri.005G092100 Populus trichocarpa HOM05D003933 ORTHO05D004746 4.3e-74 282.0 227 61.2
Glyma.11G100000 Glycine max HOM05D003933 ORTHO05D004746 6.2e-73 278.1 230 61.7
Gohir.A03G165000 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.1e-72 277.3 223 59.6
AL6G18670 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 3.1e-72 275.8 231 59.7
CANSAT11G2660 Cannabis sativa HOM05D003933 ORTHO05D004746 9.0e-72 274.2 225 59.1
MBI06_g23608_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 2.2e-70 269.6 229 58.1
VMungo1127G0010 Vigna mungo HOM05D003933 ORTHO05D004746 2.9e-70 269.2 229 60.7
ATR0618G423 Amborella trichopoda HOM05D003933 ORTHO05D004746 1.1e-69 267.3 234 56.4
AT5G08270 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 1.1e-69 267.3 231 57.6
Thhalv10013838m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 1.1e-69 267.3 230 60.0
Lj3g0003114 Lotus japonicus HOM05D003933 ORTHO05D004746 1.4e-69 266.9 229 59.4
Lj3g0021014 Lotus japonicus HOM05D003933 ORTHO05D004746 1.4e-69 266.9 229 59.4
Lj3g0018867 Lotus japonicus HOM05D003933 ORTHO05D004746 1.9e-69 266.5 229 59.4
Lj3g0017683 Lotus japonicus HOM05D003933 ORTHO05D004746 3.2e-69 265.8 229 59.0
FAN12G2057 Fragaria x ananassa HOM05D003933 ORTHO05D004746 2.7e-68 262.7 229 57.6
Lj3g0001561 Lotus japonicus HOM05D003933 ORTHO05D004746 4.6e-68 261.9 229 59.0
Carub.0006s0715 Capsella rubella HOM05D003933 ORTHO05D004746 6.0e-68 261.5 229 57.2
Gohir.D02G188200 Gossypium hirsutum HOM05D003933 ORTHO05D004746 6.0e-68 261.5 224 58.0
CDE08G0738 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 7.9e-68 261.2 231 55.4
CARHR204870 Cardamine hirsuta HOM05D003933 ORTHO05D004746 5.1e-67 258.5 229 57.2
Gorai.005G210900 Gossypium raimondii HOM05D003933 ORTHO05D004746 6.7e-67 258.1 224 58.0
arahy.Tifrunner.gnm1.ann1.E3G1QY Arachis hypogaea HOM05D003933 ORTHO05D004746 8.7e-67 257.7 228 55.3
Sp6g34690 Schrenkiella parvula HOM05D003933 ORTHO05D004746 1.9e-66 256.5 224 57.1
Medtr4g075120 Medicago truncatula HOM05D003933 ORTHO05D004746 9.6e-66 254.2 234 57.3
BcaB08g37269 Brassica carinata HOM05D003933 ORTHO05D004746 1.6e-65 253.4 228 59.2
Ca_20843_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 2.8e-65 252.7 228 57.9
Lalb_Chr19g0139431 Lupinus albus HOM05D003933 ORTHO05D004746 3.7e-65 252.3 228 56.6
arahy.Tifrunner.gnm1.ann1.3AB2AC Arachis hypogaea HOM05D003933 ORTHO05D004746 4.8e-65 251.9 228 54.4
Ca_19016_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.1e-64 250.8 228 57.0
TPR.G25000 Trifolium pratense HOM05D003933 ORTHO05D004746 1.1e-64 250.8 229 58.1
Psat7g177760 Pisum sativum HOM05D003933 ORTHO05D004746 6.9e-64 248.1 229 57.2
SEGI_04055 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 1.7e-62 243.4 218 53.7
FAN17G2963 Fragaria x ananassa HOM05D003933 ORTHO05D004746 2.2e-62 243.0 175 62.9
PGSC0003DMG400011553 Solanum tuberosum HOM05D003933 ORTHO05D004746 9.6e-58 227.6 152 68.4
HPP92_008573 Vanilla planifolia HOM05D003933 ORTHO05D004746 2.0e-55 219.9 168 60.1
Sc10g0005110 Simmondsia chinensis HOM05D003933 ORTHO05D004746 3.8e-54 215.7 180 60.6
BolC9t59613H Brassica oleracea HOM05D003933 ORTHO05D004746 1.9e-53 213.4 229 52.0
C09p68670 Brassica napus HOM05D003933 ORTHO05D004746 3.2e-53 212.6 229 51.5
A10p28410 Brassica napus HOM05D003933 ORTHO05D004746 5.5e-53 211.8 229 50.7
BraA10t44888Z Brassica rapa HOM05D003933 ORTHO05D004746 1.6e-52 210.3 229 50.2
Mapoly0072s0109 Marchantia polymorpha HOM05D003933 ORTHO05D004746 2.3e-51 206.5 239 46.0
SMO364G0332 Selaginella moellendorffii HOM05D003933 ORTHO05D004746 2.3e-51 206.5 232 46.6
AagrBONN_evm.TU.Sc2ySwM_117.4016 Anthoceros agrestis HOM05D003933 ORTHO05D004746 4.3e-50 202.2 246 43.9
Pp3c10_5850 Physcomitrium patens HOM05D003933 ORTHO05D004746 1.1e-45 187.6 244 41.0
Sed0007936 Sechium edule HOM05D003933 ORTHO05D004746 4.4e-42 175.6 167 55.7
MD16G1003200 Malus domestica HOM05D003933 ORTHO05D004746 1.8e-40 170.2 172 54.1
Dinv17619 Davidia involucrata HOM05D003933 ORTHO05D004746 3.4e-39 166.0 116 69.0
COL.COLO4_20883 Corchorus olitorius HOM05D003933 ORTHO05D004746 5.3e-32 142.1 110 59.1
GSVIVG01026245001 Vitis vinifera HOM05D003933 ORTHO05D004746 1.2e-31 141.0 231 39.8
CBR_g6576 Chara braunii HOM05D003933 ORTHO05D004746 3.5e-31 139.4 260 35.0
C02p60970 Brassica napus HOM05D003933 ORTHO05D004746 6.7e-27 125.2 223 38.1
C06p10890 Brassica napus HOM05D003933 ORTHO05D004746 1.2e-26 124.4 223 38.6
MCO06G263 Micromonas commoda HOM05D003933 ORTHO05D004746 1.8e-24 117.1 290 29.7
A02p41110 Brassica napus HOM05D003933 ORTHO05D004746 9.4e-21 104.8 64 73.4
Cre02.g086076 Chlamydomonas reinhardtii HOM05D003933 ORTHO05D004746 4.0e-19 99.4 163 31.3
BcaC03g18034 Brassica carinata HOM05D003933 ORTHO05D004746 8.3e-17 91.7 189 34.9
Dinv17620 Davidia involucrata HOM05D003933 ORTHO05D028341 1.5e-13 80.9 54 75.9
SHI31071 Sapria himalayana HOM05D003933 ORTHO05D004746 5.4e-08 62.4 230 27.0
BcaC03g13212 Brassica carinata HOM05D003933 ORTHO05D004746 7.0e-08 62.0 135 34.8
BolC2t12147H Brassica oleracea HOM05D003933 ORTHO05D028341 1.0e-06 58.2 54 64.8


User provided reference genes

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