Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049410 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 0.0e+00 1418.7 791 100.0
CSS0017117 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 0.0e+00 1412.1 791 99.7
CSS0022979 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 0.0e+00 1385.5 791 98.0
CSS0024724 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 0.0e+00 1308.9 791 90.4
CSS0004912 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 0.0e+00 1280.0 791 85.2
CSS0041949 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 7.2e-206 721.5 369 95.7
CSS0031977 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D112456 1.3e-141 508.1 407 84.5
CSS0043274 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D111155 1.3e-141 508.1 407 84.5
CSS0018317 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D110529 1.7e-138 497.7 407 83.8
CSS0031809 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D108891 3.6e-133 479.9 407 76.2
CSS0042992 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D111024 1.4e-129 468.0 407 79.1
CSS0026356 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D112650 1.2e-43 182.6 583 30.2
CSS0014082 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D112965 5.4e-36 157.1 596 30.5
Solyc05g010817.1 Solanum lycopersicum HOM05D008778 ORTHO05D003639 9.9e-22 109.8 247 29.6
Sopen00g002430 Solanum pennellii HOM05D008778 ORTHO05D003639 2.2e-21 108.6 275 28.7
Sopen00g007290 Solanum pennellii HOM05D008778 ORTHO05D003639 2.2e-21 108.6 275 28.7
Sopen09g003880 Solanum pennellii HOM05D008778 ORTHO05D003639 1.6e-19 102.4 232 31.0
Peaxi162Scf00820g00117 Petunia axillaris HOM05D008778 ORTHO05D003639 2.1e-19 102.1 230 27.8
Peaxi162Scf00820g00119 Petunia axillaris HOM05D008778 ORTHO05D003639 3.9e-18 97.8 234 28.2
FvH4_3g26742 Fragaria vesca HOM05D016656 ORTHO05D003639 4.3e-17 94.4 234 30.8
CSS0044889 Camellia sinensis var. sinensis HOM05D008778 ORTHO05D003639 5.6e-17 94.0 235 33.6
Nitab4.5_0000663g0030 Nicotiana tabacum HOM05D008778 ORTHO05D003639 2.8e-16 91.7 234 29.9
Peaxi162Scf00169g01112 Petunia axillaris HOM05D008778 ORTHO05D003639 1.1e-15 89.7 232 30.6
Nitab4.5_0001698g0060 Nicotiana tabacum HOM05D008778 ORTHO05D003639 1.4e-15 89.4 351 25.9
Nitab4.5_0000663g0010 Nicotiana tabacum HOM05D008778 ORTHO05D003639 6.9e-15 87.0 233 29.2
Nitab4.5_0001698g0030 Nicotiana tabacum HOM05D008778 ORTHO05D003639 9.0e-15 86.7 350 24.9
RcHm_v2.0_Chr5g0049171 Rosa chinensis HOM05D016656 ORTHO05D003639 9.0e-15 86.7 234 29.5
Nitab4.5_0001698g0040 Nicotiana tabacum HOM05D008778 ORTHO05D003639 1.5e-14 85.9 237 28.3
QL01p013702 Quercus lobata HOM05D009149 ORTHO05D003639 7.6e-14 83.6 347 24.5
FvH4_5g16044 Fragaria vesca HOM05D060084 ORTHO05D046536 9.9e-14 83.2 246 27.2
PGSC0003DMG400002681 Solanum tuberosum HOM05D008778 ORTHO05D003639 3.2e-12 78.2 380 23.7
Sopen09g003890 Solanum pennellii HOM05D000006 ORTHO05D000001 9.3e-12 76.6 368 25.0
Sabra13G0012400 Salix brachista HOM05D020966 ORTHO05D010251 2.1e-11 75.5 250 28.0
FAN25G0588 Fragaria x ananassa HOM05D016656 ORTHO05D003639 3.9e-10 71.2 177 30.5
RcHm_v2.0_Chr1g0321631 Rosa chinensis HOM05D008702 ORTHO05D003639 1.5e-09 69.3 245 26.9
RcHm_v2.0_Chr2g0138191 Rosa chinensis HOM05D008702 ORTHO05D003639 1.5e-09 69.3 246 28.9
RcHm_v2.0_Chr2g0142701 Rosa chinensis HOM05D008702 ORTHO05D003639 2.5e-09 68.6 245 27.3
Cc00_g19240 Coffea canephora HOM05D009149 ORTHO05D003639 4.3e-09 67.8 225 27.6
RcHm_v2.0_Chr2g0116581 Rosa chinensis HOM05D008702 ORTHO05D003639 4.3e-09 67.8 245 27.3
Nitab4.5_0007634g0020 Nicotiana tabacum HOM05D008778 ORTHO05D003639 1.6e-08 65.9 167 28.1
RcHm_v2.0_Chr7g0194611 Rosa chinensis HOM05D009149 ORTHO05D003639 2.1e-08 65.5 246 26.4
RcHm_v2.0_Chr2g0121071 Rosa chinensis HOM05D008702 ORTHO05D003639 3.7e-08 64.7 355 25.6
Nitab4.5_0006587g0010 Nicotiana tabacum HOM05D008778 ORTHO05D003639 6.2e-08 63.9 137 24.8
FAN19G0432 Fragaria x ananassa HOM05D016497 ORTHO05D019154 8.1e-08 63.5 172 29.1
RcHm_v2.0_Chr2g0152981 Rosa chinensis HOM05D008702 ORTHO05D003639 1.8e-07 62.4 353 24.4
RcHm_v2.0_Chr1g0320431 Rosa chinensis HOM05D008702 ORTHO05D003639 3.1e-07 61.6 187 28.3
Peaxi162Scf00820g00045 Petunia axillaris HOM05D008778 ORTHO05D003639 9.0e-07 60.1 239 28.0
CSS0044261 Camellia sinensis var. sinensis HOM05D013673 ORTHO05D015012 2.6e-06 58.5 239 25.9
Dinv06719 Davidia involucrata HOM05D039347 ORTHO05D025265 2.6e-06 58.5 132 29.5
vmacro21029 Vaccinium macrocarpon HOM05D001320 ORTHO05D002136 4.5e-06 57.8 155 26.5


User provided reference genes

Program Settings