Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 2.0e-58 228.8 109 100.0
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 3.3e-45 184.9 145 65.5
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 4.8e-44 181.0 145 64.1
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 6.3e-44 180.6 145 64.1
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 5.9e-42 174.1 138 63.0
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 2.9e-41 171.8 138 62.3
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 5.0e-41 171.0 163 57.7
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 5.5e-40 167.5 137 62.0
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 5.5e-40 167.5 138 60.9
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 7.2e-40 167.2 138 59.4
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 9.4e-40 166.8 139 60.4
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 2.1e-39 165.6 138 59.4
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 2.1e-39 165.6 138 59.4
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 2.1e-39 165.6 138 59.4
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 2.1e-39 165.6 138 58.7
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 6.1e-39 164.1 136 58.8
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 1.0e-38 163.3 138 59.4
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 1.4e-38 162.9 145 59.3
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 1.4e-38 162.9 139 59.7
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 1.4e-38 162.9 138 59.4
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 1.4e-38 162.9 138 60.1
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 1.8e-38 162.5 137 59.9
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 1.8e-38 162.5 138 57.2
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 2.3e-38 162.2 143 56.6
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 2.3e-38 162.2 138 58.0
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 3.0e-38 161.8 138 60.1
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 4.0e-38 161.4 138 59.4
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 5.2e-38 161.0 138 58.7
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 5.2e-38 161.0 138 57.2
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 8.8e-38 160.2 139 55.4
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 1.2e-37 159.8 136 58.8
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 1.5e-37 159.5 138 58.7
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 1.5e-37 159.5 138 57.2
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 1.5e-37 159.5 138 58.7
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 2.0e-37 159.1 138 58.7
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 2.0e-37 159.1 138 57.2
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 2.6e-37 158.7 139 56.1
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 2.6e-37 158.7 138 56.5
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 2.6e-37 158.7 145 57.2
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 2.6e-37 158.7 145 57.2
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 3.3e-37 158.3 138 58.7
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 3.3e-37 158.3 138 57.2
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 4.4e-37 157.9 139 55.4
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 4.4e-37 157.9 138 58.7
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 4.4e-37 157.9 138 56.5
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 5.7e-37 157.5 138 59.4
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 5.7e-37 157.5 138 59.4
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 5.7e-37 157.5 138 57.2
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 5.7e-37 157.5 136 58.1
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 5.7e-37 157.5 145 55.9
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 5.7e-37 157.5 138 59.4
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 7.5e-37 157.1 138 55.8
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 9.7e-37 156.8 136 55.9
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 9.7e-37 156.8 134 60.4
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 1.3e-36 156.4 138 55.8
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 1.3e-36 156.4 138 55.8
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 2.8e-36 155.2 139 55.4
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 2.8e-36 155.2 139 55.4
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 2.8e-36 155.2 139 55.4
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 2.8e-36 155.2 138 56.5
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 2.8e-36 155.2 143 53.8
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 2.8e-36 155.2 138 57.2
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 4.8e-36 154.5 138 54.3
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 6.3e-36 154.1 138 57.2
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 8.2e-36 153.7 138 57.2
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 8.2e-36 153.7 138 56.5
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.4e-35 152.9 138 56.5
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 1.4e-35 152.9 138 56.5
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 1.8e-35 152.5 138 53.6
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 2.4e-35 152.1 144 52.1
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 2.4e-35 152.1 145 55.9
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 2.4e-35 152.1 138 55.8
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 3.1e-35 151.8 138 53.6
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 3.1e-35 151.8 138 53.6
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 3.1e-35 151.8 138 53.6
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 3.1e-35 151.8 138 56.5
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 4.1e-35 151.4 138 53.6
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 4.1e-35 151.4 138 53.6
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 4.1e-35 151.4 145 55.9
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 5.3e-35 151.0 138 53.6
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 5.3e-35 151.0 138 53.6
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 5.3e-35 151.0 145 55.2
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 7.0e-35 150.6 145 55.9
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 7.0e-35 150.6 138 55.1
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 7.0e-35 150.6 138 55.8
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 9.1e-35 150.2 138 55.8
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 9.1e-35 150.2 142 54.2
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 1.6e-34 149.4 138 52.9
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 2.0e-34 149.1 138 53.6
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 2.0e-34 149.1 138 53.6
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 2.0e-34 149.1 138 53.6
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 2.0e-34 149.1 138 53.6
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 2.0e-34 149.1 138 53.6
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 2.0e-34 149.1 145 55.2
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 2.7e-34 148.7 138 52.9
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 2.7e-34 148.7 138 52.9
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 3.5e-34 148.3 145 54.5
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 3.5e-34 148.3 145 54.5
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 4.5e-34 147.9 136 56.6
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 4.5e-34 147.9 189 45.0
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 4.5e-34 147.9 189 45.0
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 7.7e-34 147.1 138 54.3
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 1.7e-33 146.0 138 54.3
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 5.0e-33 144.4 143 53.1
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 5.0e-33 144.4 138 55.8
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 8.5e-33 143.7 138 55.1
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 1.1e-32 143.3 131 55.7
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.5e-32 142.9 138 55.1
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.5e-32 142.9 138 55.1
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 1.5e-32 142.9 138 54.3
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.9e-32 142.5 138 55.1
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 1.9e-32 142.5 139 54.7
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.9e-32 142.5 134 55.2
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 2.5e-32 142.1 138 54.3
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 2.5e-32 142.1 138 53.6
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 5.5e-32 141.0 137 54.0
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 7.2e-32 140.6 139 51.1
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 1.6e-31 139.4 138 53.6
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 3.6e-31 138.3 132 53.0
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 3.6e-31 138.3 173 45.7
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 6.1e-31 137.5 147 51.0
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 1.4e-30 136.3 147 51.7
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 1.8e-30 136.0 147 52.4
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 2.3e-30 135.6 145 52.4
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 3.0e-30 135.2 135 51.9
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 4.0e-30 134.8 188 40.4
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 4.0e-30 134.8 133 51.1
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 5.2e-30 134.4 133 51.1
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 5.2e-30 134.4 146 52.1
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 6.8e-30 134.0 141 51.8
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 6.8e-30 134.0 138 50.7
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 8.8e-30 133.7 130 50.8
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 5.7e-29 131.0 141 49.6
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 7.5e-29 130.6 135 50.4
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 1.3e-28 129.8 145 46.9
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 1.3e-28 129.8 135 50.4
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 1.7e-28 129.4 130 50.0
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 4.8e-28 127.9 289 32.9
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 1.4e-27 126.3 137 48.9
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 4.5e-26 121.3 144 48.6
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 1.3e-25 119.8 120 55.8
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 1.7e-25 119.4 126 50.0
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.3e-25 119.0 135 47.4
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 2.9e-25 118.6 166 43.4
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 6.5e-25 117.5 64 81.2
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 7.2e-24 114.0 138 46.4
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 6.1e-23 110.9 138 46.4
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.0e-22 110.2 129 46.5
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.3e-22 109.0 129 45.7
CAN.G512.5 Capsicum annuum HOM05D003749 ORTHO05D004421 3.0e-22 108.6 88 60.2
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 1.2e-21 106.7 137 43.1
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 3.4e-21 105.1 136 44.9
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 7.5e-21 104.0 137 39.4
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 2.8e-20 102.1 136 43.4
DCAR_007518 Daucus carota HOM05D003749 ORTHO05D004421 1.8e-19 99.4 64 68.8
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 1.2e-18 96.7 125 44.8
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 1.2e-18 96.7 104 52.9
BcaC02g12028 Brassica carinata HOM05D003749 ORTHO05D004421 1.6e-18 96.3 82 61.0
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 1.3e-17 93.2 105 48.6
C04p08860 Brassica napus HOM05D003749 ORTHO05D004421 5.2e-14 81.3 79 55.7
BolC1t05893H Brassica oleracea HOM05D003749 ORTHO05D016434 3.7e-12 75.1 82 53.7
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 6.4e-12 74.3 125 35.2
Oeu049327.1 Olea europaea HOM05D003749 ORTHO05D004421 9.2e-11 70.5 36 83.3
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 3.0e-09 65.5 103 38.8
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 3.0e-09 65.5 103 38.8
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 3.0e-09 65.5 103 38.8
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 6.6e-09 64.3 30 96.7
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 6.6e-09 64.3 30 96.7
Gohir.D08G115050 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.1e-08 63.5 41 70.7
Oeu027946.1 Olea europaea HOM05D003749 ORTHO05D004421 1.1e-08 63.5 38 73.7
Gorai.009G403900 Gossypium raimondii HOM05D003749 ORTHO05D004421 1.5e-08 63.2 41 68.3
Oeu049326.1 Olea europaea HOM05D003749 ORTHO05D004421 4.3e-08 61.6 38 71.1
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 2.8e-07 58.9 38 68.4
Gorai.008G075700 Gossypium raimondii HOM05D000140 ORTHO05D008077 2.8e-07 58.9 34 70.6
Gohir.D12G069201 Gossypium hirsutum HOM05D000140 ORTHO05D008077 6.2e-07 57.8 34 67.6
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 8.0e-07 57.4 71 43.7
Gohir.D08G113616 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.4e-06 56.6 39 61.5
Gorai.003G095200 Gossypium raimondii HOM05D003749 ORTHO05D004421 1.8e-06 56.2 34 67.6
BcaC06g35350 Brassica carinata HOM05D000085 ORTHO05D003318 2.3e-06 55.8 37 67.6
Actinidia26289 Actinidia chinensis HOM05D003749 ORTHO05D058081 8.9e-06 53.9 39 64.1


User provided reference genes

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