Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 0.0e+00 1215.3 710 100.0
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 3.7e-177 625.9 749 62.8
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 3.0e-142 510.0 772 56.7
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 8.6e-134 481.9 752 54.4
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 2.4e-128 463.8 725 54.1
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 6.6e-126 455.7 714 51.3
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 8.1e-124 448.7 729 52.5
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.2e-122 444.9 752 48.8
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 3.4e-122 443.4 759 48.6
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 9.9e-122 441.8 758 47.6
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 1.3e-121 441.4 771 50.3
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 1.9e-120 437.6 724 51.9
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 2.7e-119 433.7 762 51.8
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 1.1e-117 428.3 761 49.9
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 9.6e-117 425.2 740 50.8
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 1.8e-115 421.0 717 49.0
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 1.8e-115 421.0 805 47.1
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 3.1e-115 420.2 769 53.2
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 2.2e-113 414.1 732 53.3
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 3.2e-112 410.2 661 50.7
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 1.7e-110 404.4 787 49.7
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 2.3e-110 404.1 787 44.6
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 1.6e-108 397.9 788 46.4
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 1.7e-105 387.9 765 46.3
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 1.9e-104 384.4 740 47.4
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 7.1e-104 382.5 778 44.7
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 2.7e-103 380.6 799 47.6
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 2.7e-103 380.6 755 48.7
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.5e-101 374.8 737 46.4
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 1.9e-101 374.4 760 47.0
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.9e-101 374.4 786 46.8
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 2.5e-101 374.0 645 50.1
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 5.6e-101 372.9 781 47.4
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 5.6e-101 372.9 735 44.9
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 9.6e-101 372.1 800 48.5
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 1.8e-99 367.9 734 42.2
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 2.0e-98 364.4 756 47.6
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 2.4e-96 357.5 730 45.5
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 7.9e-95 352.4 598 48.8
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 3.9e-94 350.1 780 45.6
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 1.5e-93 348.2 793 44.0
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 1.9e-93 347.8 723 45.9
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 4.3e-93 346.7 788 45.7
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 2.1e-92 344.4 782 44.4
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 3.1e-91 340.5 772 41.5
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 4.0e-91 340.1 772 41.5
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 4.0e-91 340.1 772 41.5
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 5.3e-91 339.7 813 43.8
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 5.3e-91 339.7 818 40.7
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 4.5e-90 336.7 716 46.8
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 1.0e-89 335.5 792 43.7
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 2.2e-89 334.3 804 45.3
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 2.2e-89 334.3 800 42.5
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 1.4e-88 331.6 800 43.5
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 1.9e-88 331.3 724 46.3
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 3.2e-88 330.5 766 41.0
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 3.2e-88 330.5 766 39.3
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 7.1e-88 329.3 772 39.2
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 1.2e-87 328.6 727 46.1
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 1.0e-86 325.5 802 41.8
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 1.0e-86 325.5 768 44.4
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 3.0e-86 323.9 780 41.5
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 1.6e-84 318.2 736 44.7
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 3.7e-84 317.0 693 42.0
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 1.2e-82 312.0 736 39.4
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.2e-82 312.0 763 38.5
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 4.5e-82 310.1 815 40.6
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 2.2e-81 307.8 687 42.8
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 1.2e-79 302.0 726 45.6
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 1.6e-79 301.6 816 39.3
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 2.3e-78 297.7 722 41.3
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 3.9e-78 297.0 600 44.2
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 6.7e-78 296.2 763 42.2
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 8.8e-78 295.8 622 43.4
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 3.3e-77 293.9 780 38.3
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 4.3e-77 293.5 676 46.9
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 4.3e-77 293.5 764 38.1
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 1.4e-75 288.5 718 42.6
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 1.8e-75 288.1 454 60.1
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 1.5e-74 285.0 804 37.8
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 5.0e-73 280.0 680 42.2
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 8.5e-73 279.3 760 37.0
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 1.4e-72 278.5 783 39.5
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 1.2e-71 275.4 768 41.7
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 6.7e-70 269.6 685 41.6
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 2.0e-69 268.1 703 36.7
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 5.7e-69 266.5 731 43.0
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.4e-67 261.9 670 38.5
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.8e-67 261.5 766 41.4
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.2e-66 258.8 263 59.7
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 1.0e-65 255.8 718 36.9
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 1.7e-65 255.0 768 42.3
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 1.1e-64 252.3 729 37.0
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 1.4e-64 251.9 810 40.5
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 1.4e-64 251.9 745 35.0
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 4.7e-63 246.9 695 35.0
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 3.9e-62 243.8 441 46.0
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 5.2e-62 243.4 416 59.6
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 4.4e-61 240.4 746 39.8
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 5.7e-61 240.0 751 42.6
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 7.4e-61 239.6 749 35.1
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.3e-60 238.8 765 40.3
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 3.7e-60 237.3 794 35.4
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 3.1e-59 234.2 788 34.5
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 3.1e-59 234.2 711 34.6
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 5.3e-59 233.4 750 34.8
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 7.0e-59 233.0 648 38.7
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 1.6e-58 231.9 711 41.2
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 3.5e-58 230.7 663 37.4
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 5.9e-58 229.9 743 41.3
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 1.1e-56 225.7 664 38.0
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 7.2e-56 223.0 342 50.0
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 2.7e-55 221.1 743 33.9
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 7.5e-53 213.0 746 34.5
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.7e-52 211.8 773 39.7
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 1.1e-51 209.1 733 37.4
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.8e-51 208.4 637 37.8
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 2.4e-51 208.0 637 35.8
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 2.4e-51 208.0 591 39.1
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 2.4e-51 208.0 759 37.5
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 3.1e-51 207.6 621 38.8
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 1.6e-50 205.3 668 42.1
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 1.0e-49 202.6 618 37.2
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 1.0e-49 202.6 564 37.1
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 1.7e-49 201.8 615 35.9
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 2.9e-49 201.1 735 38.2
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 3.2e-48 197.6 691 39.7
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 1.2e-47 195.7 692 39.6
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 6.8e-46 189.9 636 38.2
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.2e-45 189.1 747 36.9
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 1.8e-43 181.8 567 34.2
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 2.4e-43 181.4 688 32.6
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 4.1e-43 180.6 665 33.7
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 7.0e-43 179.9 471 38.6
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 1.3e-41 175.6 675 33.6
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 1.5e-40 172.2 466 39.7
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.2e-39 169.1 279 45.5
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.8e-38 165.2 219 49.8
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 1.5e-37 162.2 614 35.3
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 1.3e-33 149.1 696 31.0
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 2.9e-33 147.9 685 36.6
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 2.5e-32 144.8 352 39.5
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 2.8e-31 141.4 697 30.0
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 1.4e-30 139.0 509 34.8
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 4.4e-29 134.0 469 44.3
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 2.4e-27 128.3 194 50.0
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 1.6e-26 125.6 510 39.2
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 1.6e-26 125.6 500 33.4
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 4.6e-26 124.0 586 28.5
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 1.3e-25 122.5 627 31.6
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 1.3e-25 122.5 627 31.6
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 1.7e-25 122.1 509 39.1
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 7.3e-24 116.7 116 58.6
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 1.2e-23 115.9 144 53.5
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 1.6e-23 115.5 441 42.2
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 6.2e-23 113.6 184 45.7
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 8.9e-22 109.8 144 54.2
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 5.4e-19 100.5 572 32.7
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 3.5e-18 97.8 209 40.7
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 7.3e-16 90.1 267 38.2
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 8.9e-14 83.2 119 48.7
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.9e-11 75.5 222 32.9
TAR629G2443 Trochodendron aralioides HOM05D003795 ORTHO05D004308 7.1e-11 73.6 123 48.0
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 6.0e-10 70.5 310 28.4
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 1.7e-09 68.9 342 28.1
ATR0124G054 Amborella trichopoda HOM05D003795 ORTHO05D004308 2.3e-09 68.6 562 33.1
MD14G1072800 Malus domestica HOM05D003795 ORTHO05D004308 2.3e-09 68.6 116 42.2
Aa31LG1G18490 Aethionema arabicum HOM05D003795 ORTHO05D004308 2.1e-07 62.0 60 61.7
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 3.1e-06 58.2 142 38.0
C03p77490 Brassica napus HOM05D011073 ORTHO05D013800 5.2e-06 57.4 91 47.3
BraA02t06724Z Brassica rapa HOM05D011073 ORTHO05D013800 5.2e-06 57.4 91 47.3
Peaxi162Scf00036g00224 Petunia axillaris HOM05D002102 ORTHO05D004119 8.9e-06 56.6 77 51.9


User provided reference genes

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