Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049349 Camellia sinensis var. sinensis HOM05D002915 ORTHO05D003004 1.5e-71 272.7 131 100.0
CSS0045033 Camellia sinensis var. sinensis HOM05D002915 ORTHO05D003004 1.3e-64 249.6 129 90.7
vmacro16134 Vaccinium macrocarpon HOM05D002915 ORTHO05D003004 5.8e-36 154.5 126 59.5
Rhsim12G0105400 Rhododendron simsii HOM05D002915 ORTHO05D003004 1.1e-34 150.2 125 56.0
Rhsim02G0221300 Rhododendron simsii HOM05D002915 ORTHO05D003004 1.0e-32 143.7 125 52.8
Rhsim13G0213700 Rhododendron simsii HOM05D002915 ORTHO05D003004 1.7e-32 142.9 125 52.8
Rhsim12G0105300 Rhododendron simsii HOM05D002915 ORTHO05D003004 6.6e-32 141.0 125 52.8
Actinidia25760 Actinidia chinensis HOM05D002915 ORTHO05D003004 1.5e-28 129.8 122 55.7
Hma1.2p1_0167F.1_g073810 Hydrangea macrophylla HOM05D002915 ORTHO05D003004 1.4e-26 123.2 128 53.1
Lj6A821T72 Lonicera japonica HOM05D002915 ORTHO05D003004 2.4e-21 105.9 168 36.3
Haze_24934 Corylus avellana HOM05D002915 ORTHO05D003004 3.1e-21 105.5 138 44.2
Cfa002665 Carpinus fangiana HOM05D002915 ORTHO05D003004 4.0e-21 105.1 137 43.1
TAR629G0058 Trochodendron aralioides HOM05D002915 ORTHO05D003004 1.2e-20 103.6 127 45.7
MD16G1169500 Malus domestica HOM05D002915 ORTHO05D003004 2.0e-20 102.8 138 39.9
HanXRQChr05g0131161 Helianthus annuus HOM05D002915 ORTHO05D003004 3.4e-20 102.1 123 43.1
TAR629G0865 Trochodendron aralioides HOM05D002915 ORTHO05D003004 5.8e-20 101.3 131 42.7
MD16G1170100 Malus domestica HOM05D002915 ORTHO05D003004 8.4e-19 97.4 135 39.3
Manes.12G014800 Manihot esculenta HOM05D002915 ORTHO05D003004 8.4e-19 97.4 143 39.2
Dinv14798 Davidia involucrata HOM05D002915 ORTHO05D003004 1.1e-18 97.1 129 42.6
Sabra13G0007400 Salix brachista HOM05D002915 ORTHO05D003004 5.5e-18 94.7 129 40.3
Manes.13G015600 Manihot esculenta HOM05D002915 ORTHO05D003004 1.6e-17 93.2 143 37.8
Manes.12G023850 Manihot esculenta HOM05D002915 ORTHO05D003004 2.1e-17 92.8 148 37.2
Potri.013G008800 Populus trichocarpa HOM05D002915 ORTHO05D003004 1.0e-16 90.5 126 38.1
TAR629G2135 Trochodendron aralioides HOM05D002915 ORTHO05D003004 1.0e-16 90.5 134 40.3
Prupe.1G137300 Prunus persica HOM05D002915 ORTHO05D003004 1.3e-16 90.1 131 35.9
Duzib168G1329 Durio zibethinus HOM05D002915 ORTHO05D003004 2.3e-16 89.4 139 37.4
Duzib150G0710 Durio zibethinus HOM05D002915 ORTHO05D003004 3.9e-16 88.6 140 35.7
Gohir.A09G111900 Gossypium hirsutum HOM05D002915 ORTHO05D003004 8.7e-16 87.4 130 36.9
Gohir.D09G108400 Gossypium hirsutum HOM05D002915 ORTHO05D003004 8.7e-16 87.4 130 36.9
QL03p054762 Quercus lobata HOM05D002915 ORTHO05D003004 8.7e-16 87.4 136 36.8
Duzib168G1942 Durio zibethinus HOM05D002915 ORTHO05D003004 1.1e-15 87.0 134 34.3
Manes.11G084185 Manihot esculenta HOM05D002915 ORTHO05D003004 1.1e-15 87.0 144 38.2
Psat4g025920 Pisum sativum HOM05D002915 ORTHO05D003004 1.9e-15 86.3 130 36.9
Atru.chr11.2288 Acer truncatum HOM05D002915 ORTHO05D003004 2.5e-15 85.9 128 41.4
TWI09G1418 Tripterygium wilfordii HOM05D002915 ORTHO05D003004 3.3e-15 85.5 128 36.7
Gorai.006G126200 Gossypium raimondii HOM05D002915 ORTHO05D003004 4.3e-15 85.1 130 36.9
FAN26G0404 Fragaria x ananassa HOM05D002915 ORTHO05D003004 7.4e-15 84.3 131 35.1
Gohir.D09G108500 Gossypium hirsutum HOM05D002915 ORTHO05D003004 7.4e-15 84.3 130 36.9
vmacro16232 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 7.4e-15 84.3 69 65.2
FAN19G1392 Fragaria x ananassa HOM05D002915 ORTHO05D003004 1.3e-14 83.6 131 33.6
Gorai.006G126100 Gossypium raimondii HOM05D002915 ORTHO05D003004 2.1e-14 82.8 130 36.2
Lj4g0001673 Lotus japonicus HOM05D002915 ORTHO05D003004 2.8e-14 82.4 131 37.4
RcHm_v2.0_Chr4g0422141 Rosa chinensis HOM05D002915 ORTHO05D003004 2.8e-14 82.4 131 34.4
Atru.chr11.2244 Acer truncatum HOM05D002915 ORTHO05D003004 1.1e-13 80.5 124 37.1
Atru.chr11.2259 Acer truncatum HOM05D002915 ORTHO05D003004 1.1e-13 80.5 124 37.1
Lj6A815T43 Lonicera japonica HOM05D002915 ORTHO05D003004 1.1e-13 80.5 114 42.1
CiPaw.05G115300 Carya illinoinensis HOM05D002915 ORTHO05D003004 1.4e-13 80.1 137 36.5
CiPaw.05G115400 Carya illinoinensis HOM05D002915 ORTHO05D003004 1.4e-13 80.1 137 36.5
HanXRQChr08g0207481 Helianthus annuus HOM05D002915 ORTHO05D003004 1.4e-13 80.1 105 42.9
Lj4g0008862 Lotus japonicus HOM05D002915 ORTHO05D003004 1.4e-13 80.1 134 35.8
Psat0s3757g0040 Pisum sativum HOM05D002915 ORTHO05D003004 9.0e-13 77.4 132 37.9
Atru.chr1.712 Acer truncatum HOM05D002915 ORTHO05D003004 1.2e-12 77.0 124 34.7
Lj2g0014982 Lotus japonicus HOM05D002915 ORTHO05D003004 1.2e-12 77.0 127 40.2
Psat0s1573g0120 Pisum sativum HOM05D002915 ORTHO05D003004 2.0e-12 76.3 132 37.1
Atru.chr1.711 Acer truncatum HOM05D002915 ORTHO05D003004 2.6e-12 75.9 121 37.2
Glyma.17G083900 Glycine max HOM05D002915 ORTHO05D003004 3.4e-12 75.5 124 39.5
TWI09G0909 Tripterygium wilfordii HOM05D002915 ORTHO05D003004 3.4e-12 75.5 112 42.0
Gohir.A05G169100 Gossypium hirsutum HOM05D002915 ORTHO05D003004 4.5e-12 75.1 130 33.1
Thecc.06G218700 Theobroma cacao HOM05D002915 ORTHO05D003004 4.5e-12 75.1 130 33.1
Medtr3g075360 Medicago truncatula HOM05D002915 ORTHO05D003004 5.9e-12 74.7 134 32.8
Medtr5g033770 Medicago truncatula HOM05D002915 ORTHO05D003004 5.9e-12 74.7 134 35.8
CiPaw.05G115500 Carya illinoinensis HOM05D002915 ORTHO05D003004 7.6e-12 74.3 139 36.0
Glyma.07G247800 Glycine max HOM05D002915 ORTHO05D003004 7.6e-12 74.3 126 34.1
Psat0s6185g0040 Pisum sativum HOM05D002915 ORTHO05D003004 1.0e-11 73.9 132 36.4
TWI09G1379 Tripterygium wilfordii HOM05D002915 ORTHO05D003004 1.0e-11 73.9 129 38.8
Lj4g0002182 Lotus japonicus HOM05D002915 ORTHO05D003004 1.7e-11 73.2 124 37.1
Lj4g0005635 Lotus japonicus HOM05D002915 ORTHO05D003004 1.7e-11 73.2 124 37.9
CiPaw.06G099700 Carya illinoinensis HOM05D002915 ORTHO05D003004 2.9e-11 72.4 133 33.1
ClCG11G013100 Citrullus lanatus HOM05D002915 ORTHO05D003004 2.9e-11 72.4 129 33.3
Lj1g0000366 Lotus japonicus HOM05D002915 ORTHO05D003004 2.9e-11 72.4 127 34.6
Thecc.09G039200 Theobroma cacao HOM05D002915 ORTHO05D003004 2.9e-11 72.4 129 31.0
MELO3C011803.2 Cucumis melo HOM05D002915 ORTHO05D003004 3.8e-11 72.0 123 33.3
Gohir.D05G172300 Gossypium hirsutum HOM05D002915 ORTHO05D003004 3.8e-11 72.0 130 32.3
Gorai.009G177500 Gossypium raimondii HOM05D002915 ORTHO05D003004 3.8e-11 72.0 130 32.3
Lj4g0013622 Lotus japonicus HOM05D002915 ORTHO05D003004 3.8e-11 72.0 124 37.1
Duzib168G1902 Durio zibethinus HOM05D002915 ORTHO05D003004 5.0e-11 71.6 134 31.3
Lj6g0013707 Lotus japonicus HOM05D002915 ORTHO05D003004 5.0e-11 71.6 128 37.5
Medtr4g119850 Medicago truncatula HOM05D002915 ORTHO05D003004 5.0e-11 71.6 133 33.8
CsaV3_5G029620 Cucumis sativus L. HOM05D002915 ORTHO05D003004 6.5e-11 71.2 125 30.4
Cc02_g04260 Coffea canephora HOM05D002915 ORTHO05D003004 8.4e-11 70.9 123 33.3
Lsat_1_v5_gn_8_150181 Lactuca sativa HOM05D000825 ORTHO05D003684 8.4e-11 70.9 43 74.4
Lalb_Chr13g0303601 Lupinus albus HOM05D002915 ORTHO05D003004 1.1e-10 70.5 130 34.6
Lj4g0001937 Lotus japonicus HOM05D002915 ORTHO05D003004 1.9e-10 69.7 124 36.3
Lalb_Chr10g0105601 Lupinus albus HOM05D002915 ORTHO05D003004 1.9e-10 69.7 127 33.1
THA.LOC104810144 Tarenaya hassleriana HOM05D002915 ORTHO05D003004 1.9e-10 69.7 131 32.8
Lj2g0021070 Lotus japonicus HOM05D002915 ORTHO05D003004 3.2e-10 68.9 132 32.6
Carub.0002s1396 Capsella rubella HOM05D002915 ORTHO05D003004 4.2e-10 68.6 134 30.6
MELO3C034049.2 Cucumis melo HOM05D002915 ORTHO05D003004 4.2e-10 68.6 125 34.4
Lj6g0019512 Lotus japonicus HOM05D002915 ORTHO05D003004 4.2e-10 68.6 127 34.6
Phvul.003G180400 Phaseolus vulgaris HOM05D002915 ORTHO05D003004 4.2e-10 68.6 132 31.1
TPR.G3196 Trifolium pratense HOM05D002915 ORTHO05D003004 5.5e-10 68.2 136 32.4
Nn1g09544 Nelumbo nucifera HOM05D002915 ORTHO05D003004 7.2e-10 67.8 127 32.3
Lalb_Chr18g0050831 Lupinus albus HOM05D002915 ORTHO05D003004 9.3e-10 67.4 127 33.1
Sopen06g010910 Solanum pennellii HOM05D000025 ORTHO05D000136 9.3e-10 67.4 125 32.8
TPR.G23884 Trifolium pratense HOM05D002915 ORTHO05D003004 9.3e-10 67.4 132 34.8
Ca_21504_v3 Cicer arietinum L. HOM05D002915 ORTHO05D003004 1.2e-09 67.0 131 33.6
Hund03449 Selenicereus undatus HOM05D002915 ORTHO05D003004 1.2e-09 67.0 128 32.0
Lj3g0026757 Lotus japonicus HOM05D002915 ORTHO05D003004 1.6e-09 66.6 124 35.5
Carub.0002s2166 Capsella rubella HOM05D002915 ORTHO05D003004 2.7e-09 65.9 123 29.3
Migut.F00476 Erythranthe guttata HOM05D002915 ORTHO05D003004 2.7e-09 65.9 117 34.2
Aqoxy4G02259 Aquilegia oxysepala HOM05D002915 ORTHO05D003004 3.5e-09 65.5 124 33.1
Migut.F00575 Erythranthe guttata HOM05D002915 ORTHO05D003004 3.5e-09 65.5 117 34.2
Lj1g0003622 Lotus japonicus HOM05D002915 ORTHO05D003004 4.6e-09 65.1 131 32.1
Lj3g0023229 Lotus japonicus HOM05D002915 ORTHO05D003004 4.6e-09 65.1 134 32.1
Aqoxy4G02244 Aquilegia oxysepala HOM05D002915 ORTHO05D003004 6.1e-09 64.7 124 31.5
Sp5g30010 Schrenkiella parvula HOM05D002915 ORTHO05D003004 6.1e-09 64.7 128 30.5
PGSC0003DMG400043755 Solanum tuberosum HOM05D002915 ORTHO05D003004 6.1e-09 64.7 121 28.1
Aqoxy1G00479 Aquilegia oxysepala HOM05D002915 ORTHO05D003004 7.9e-09 64.3 117 31.6
Cc05_g03590 Coffea canephora HOM05D002915 ORTHO05D003004 7.9e-09 64.3 124 28.2
CsaV3_1G004340 Cucumis sativus L. HOM05D002915 ORTHO05D003004 7.9e-09 64.3 132 31.8
DCAR_016182 Daucus carota HOM05D002915 ORTHO05D003004 7.9e-09 64.3 117 29.9
Lj3g0011377 Lotus japonicus HOM05D002915 ORTHO05D003004 1.0e-08 63.9 131 34.4
Lj6g0021938 Lotus japonicus HOM05D002915 ORTHO05D003004 1.0e-08 63.9 130 33.1
Dinv28571 Davidia involucrata HOM05D002915 ORTHO05D003004 1.3e-08 63.5 109 33.0
Lj2g0026934 Lotus japonicus HOM05D002915 ORTHO05D003004 1.3e-08 63.5 126 33.3
COL.COLO4_36468 Corchorus olitorius HOM05D002915 ORTHO05D003004 1.8e-08 63.2 137 29.2
Thhalv10019573m.g Eutrema salsugineum HOM05D002915 ORTHO05D003004 1.8e-08 63.2 136 29.4
Migut.C00063 Erythranthe guttata HOM05D002915 ORTHO05D003004 3.0e-08 62.4 117 34.2
Potri.001G321400 Populus trichocarpa HOM05D002915 ORTHO05D003004 3.0e-08 62.4 69 42.0
Sed0005801 Sechium edule HOM05D002915 ORTHO05D003004 3.0e-08 62.4 134 31.3
AL2G26290 Arabidopsis lyrata HOM05D002915 ORTHO05D003004 3.9e-08 62.0 130 31.5
Gorai.007G046700 Gossypium raimondii HOM05D002915 ORTHO05D003004 3.9e-08 62.0 127 32.3
Gohir.D11G043350 Gossypium hirsutum HOM05D002915 ORTHO05D003004 5.1e-08 61.6 127 32.3
PGR142G3351 Punica granatum HOM05D002915 ORTHO05D003004 5.1e-08 61.6 123 32.5
Actinidia33258 Actinidia chinensis HOM05D002915 ORTHO05D003004 8.7e-08 60.8 61 55.7
PSO339G6727 Papaver somniferum HOM05D002915 ORTHO05D003004 8.7e-08 60.8 127 32.3
Aqoxy1G01229 Aquilegia oxysepala HOM05D002915 ORTHO05D003004 1.1e-07 60.5 126 34.1
Medtr4g112590 Medicago truncatula HOM05D002915 ORTHO05D003004 1.1e-07 60.5 126 33.3
PSO384G2811 Papaver somniferum HOM05D002915 ORTHO05D003004 1.1e-07 60.5 130 31.5
PSO384G3355 Papaver somniferum HOM05D002915 ORTHO05D003004 1.1e-07 60.5 130 31.5
FvH4_4g17961 Fragaria vesca HOM05D002915 ORTHO05D003004 1.5e-07 60.1 125 31.2
Lj4g0014849 Lotus japonicus HOM05D002915 ORTHO05D003004 1.5e-07 60.1 128 33.6
MELO3C029741.2 Cucumis melo HOM05D002915 ORTHO05D003004 2.5e-07 59.3 134 29.1
FAN17G1773 Fragaria x ananassa HOM05D002915 ORTHO05D003004 3.3e-07 58.9 125 31.2
FAN23G0131 Fragaria x ananassa HOM05D002915 ORTHO05D003004 3.3e-07 58.9 105 32.4
Lj4g0025234 Lotus japonicus HOM05D002915 ORTHO05D003004 3.3e-07 58.9 143 28.7
AT1G74875 Arabidopsis thaliana HOM05D002915 ORTHO05D003004 5.7e-07 58.2 130 30.0
Lj6g0001752 Lotus japonicus HOM05D002915 ORTHO05D003004 5.7e-07 58.2 131 34.4
TPR.G19429 Trifolium pratense HOM05D002915 ORTHO05D003004 5.7e-07 58.2 123 32.5
DCAR_018111 Daucus carota HOM05D002915 ORTHO05D003004 1.3e-06 57.0 117 32.5
CAN.G1143.27 Capsicum annuum HOM05D002915 ORTHO05D003004 1.6e-06 56.6 120 27.5
Lj5g0020165 Lotus japonicus HOM05D002915 ORTHO05D003004 1.6e-06 56.6 129 31.0
DCAR_018110 Daucus carota HOM05D002915 ORTHO05D003004 2.2e-06 56.2 119 29.4
SGA_v2.0_scaffold169G38697 Striga asiatica HOM05D002915 ORTHO05D003004 2.2e-06 56.2 125 30.4
arahy.Tifrunner.gnm1.ann1.JTPM3R Arachis hypogaea HOM05D000176 ORTHO05D000106 2.8e-06 55.8 134 30.6
Eucgr.K00814 Eucalyptus grandis HOM05D002915 ORTHO05D003004 2.8e-06 55.8 110 33.6
Thecc.03G155800 Theobroma cacao HOM05D002915 ORTHO05D003004 3.7e-06 55.5 126 32.5
Eucgr.G01397 Eucalyptus grandis HOM05D002915 ORTHO05D003004 4.8e-06 55.1 108 31.5
FAN28G1700 Fragaria x ananassa HOM05D002915 ORTHO05D003004 4.8e-06 55.1 87 35.6
FAN28G2009 Fragaria x ananassa HOM05D002915 ORTHO05D003004 4.8e-06 55.1 87 35.6
FAN28G2017 Fragaria x ananassa HOM05D002915 ORTHO05D003004 4.8e-06 55.1 87 35.6
Lj1g0028201 Lotus japonicus HOM05D002915 ORTHO05D003004 4.8e-06 55.1 116 31.9
PGSC0003DMG400021580 Solanum tuberosum HOM05D002915 ORTHO05D003004 4.8e-06 55.1 81 37.0


User provided reference genes

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