Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049342 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.0e-51 206.5 103 100.0
CSS0043766 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 9.5e-26 120.2 144 53.5
CSS0042404 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.3e-22 109.8 135 51.9
CSS0043784 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.1e-18 96.7 76 69.7
CSS0038565 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 3.3e-18 95.1 76 68.4
CSS0025461 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 9.0e-16 87.0 66 69.7
Rhsim09G0026500 Rhododendron simsii HOM05D003336 ORTHO05D003807 1.3e-14 83.2 76 60.5
RhsimUnG0196100 Rhododendron simsii HOM05D003336 ORTHO05D003807 1.3e-14 83.2 76 60.5
Hma1.2p1_0886F.1_g232710 Hydrangea macrophylla HOM05D003336 ORTHO05D003807 2.9e-14 82.0 70 62.9
CSS0016383 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.1e-13 80.1 67 65.7
TAR365G0105 Trochodendron aralioides HOM05D003336 ORTHO05D003807 1.1e-13 80.1 76 60.5
QL07p004835 Quercus lobata HOM05D003336 ORTHO05D003807 2.4e-13 79.0 79 57.0
GSVIVG01006062001 Vitis vinifera HOM05D003336 ORTHO05D003807 5.4e-13 77.8 78 56.4
Atru.chr6.1778 Acer truncatum HOM05D003336 ORTHO05D003807 7.1e-13 77.4 79 55.7
Aqoxy2G03656 Aquilegia oxysepala HOM05D003336 ORTHO05D003807 1.2e-12 76.6 75 60.0
Gohir.D02G013300 Gossypium hirsutum HOM05D003336 ORTHO05D003807 1.2e-12 76.6 70 60.0
Gorai.005G016800 Gossypium raimondii HOM05D003336 ORTHO05D003807 1.2e-12 76.6 70 60.0
CANSAT78G0594 Cannabis sativa HOM05D003336 ORTHO05D003807 1.6e-12 76.3 78 57.7
Sed0018746 Sechium edule HOM05D003336 ORTHO05D003807 1.6e-12 76.3 70 60.0
Duzib151G0181 Durio zibethinus HOM05D003336 ORTHO05D003807 2.1e-12 75.9 76 57.9
Thecc.04G177600 Theobroma cacao HOM05D003336 ORTHO05D003807 2.1e-12 75.9 76 57.9
Zm00001eb376450 Zea mays HOM05D003336 ORTHO05D003807 2.1e-12 75.9 66 62.1
Glyma.17G108000 Glycine max HOM05D003336 ORTHO05D003807 2.7e-12 75.5 77 57.1
Os05g0194600 Oryza sativa ssp. japonica HOM05D003336 ORTHO05D003807 2.7e-12 75.5 66 62.1
AUR62011428 Chenopodium quinoa HOM05D003336 ORTHO05D003807 3.5e-12 75.1 70 57.1
EL10Ac3g06008 Beta vulgaris HOM05D003336 ORTHO05D003807 4.6e-12 74.7 72 56.9
AUR62008210 Chenopodium quinoa HOM05D003336 ORTHO05D003807 4.6e-12 74.7 70 55.7
Gohir.A02G012500 Gossypium hirsutum HOM05D003336 ORTHO05D003807 4.6e-12 74.7 67 61.2
AUR62030962 Chenopodium quinoa HOM05D003336 ORTHO05D003807 6.0e-12 74.3 70 55.7
Eucgr.H01866 Eucalyptus grandis HOM05D003336 ORTHO05D003807 6.0e-12 74.3 76 53.9
MD17G1219400 Malus domestica HOM05D003336 ORTHO05D003807 6.0e-12 74.3 78 55.1
QL10p049056 Quercus lobata HOM05D003336 ORTHO05D003807 6.0e-12 74.3 79 54.4
Zm00001eb007550 Zea mays HOM05D003336 ORTHO05D003807 6.0e-12 74.3 66 60.6
Zm00001eb016890 Zea mays HOM05D003336 ORTHO05D003807 6.0e-12 74.3 66 60.6
Zm00001eb059340 Zea mays HOM05D003336 ORTHO05D003807 6.0e-12 74.3 66 60.6
Zm00001eb121330 Zea mays HOM05D003336 ORTHO05D003807 6.0e-12 74.3 66 60.6
Zm00001eb283430 Zea mays HOM05D003336 ORTHO05D003807 6.0e-12 74.3 66 60.6
Zm00001eb324020 Zea mays HOM05D003336 ORTHO05D003807 6.0e-12 74.3 66 60.6
Zm00001eb336440 Zea mays HOM05D003336 ORTHO05D003807 6.0e-12 74.3 66 60.6
Zm00001eb398700 Zea mays HOM05D003336 ORTHO05D003807 6.0e-12 74.3 66 60.6
Migut.O00911 Erythranthe guttata HOM05D003336 ORTHO05D003807 7.8e-12 73.9 74 54.1
Sc25g0002520 Simmondsia chinensis HOM05D003336 ORTHO05D003807 7.8e-12 73.9 89 47.2
TWI34G1872 Tripterygium wilfordii HOM05D003336 ORTHO05D003807 7.8e-12 73.9 66 60.6
Eucgr.A00092 Eucalyptus grandis HOM05D003336 ORTHO05D003807 1.0e-11 73.6 67 58.2
Eucgr.A00283 Eucalyptus grandis HOM05D003336 ORTHO05D003807 1.0e-11 73.6 67 58.2
Eucgr.L00050 Eucalyptus grandis HOM05D003336 ORTHO05D003807 1.0e-11 73.6 67 58.2
Ciclev10001634m.g Citrus clementina HOM05D003336 ORTHO05D003807 1.3e-11 73.2 69 56.5
Migut.N03104 Erythranthe guttata HOM05D003336 ORTHO05D003807 1.3e-11 73.2 69 55.1
Ah.11g051610 Amaranthus hybridus HOM05D003336 ORTHO05D003807 1.7e-11 72.8 66 59.1
CSS0012442 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.7e-11 72.8 61 65.6
Atru.chr6.1080 Acer truncatum HOM05D003336 ORTHO05D003807 3.0e-11 72.0 74 55.4
MELO3C021601.2 Cucumis melo HOM05D003336 ORTHO05D003807 3.0e-11 72.0 76 56.6
RcHm_v2.0_Chr1g0329821 Rosa chinensis HOM05D003336 ORTHO05D003807 3.0e-11 72.0 69 56.5
arahy.Tifrunner.gnm1.ann1.DI9DGG Arachis hypogaea HOM05D003336 ORTHO05D003807 3.9e-11 71.6 77 54.5
Solyc02g068750.1 Solanum lycopersicum HOM05D003336 ORTHO05D003807 3.9e-11 71.6 66 57.6
Sopen02g017920 Solanum pennellii HOM05D003336 ORTHO05D003807 3.9e-11 71.6 66 57.6
THA.LOC104806347 Tarenaya hassleriana HOM05D003336 ORTHO05D003807 3.9e-11 71.6 66 59.1
arahy.Tifrunner.gnm1.ann1.4MR6LE Arachis hypogaea HOM05D003336 ORTHO05D003807 5.1e-11 71.2 77 54.5
arahy.Tifrunner.gnm1.ann1.H7WPER Arachis hypogaea HOM05D003336 ORTHO05D003807 5.1e-11 71.2 77 54.5
arahy.Tifrunner.gnm1.ann1.HN7X2L Arachis hypogaea HOM05D003336 ORTHO05D003807 5.1e-11 71.2 77 54.5
MSTRG.9761 Avicennia marina HOM05D003336 ORTHO05D003807 5.1e-11 71.2 68 57.4
Glyma.19G252200 Glycine max HOM05D003336 ORTHO05D003807 5.1e-11 71.2 77 54.5
PGSC0003DMG400010450 Solanum tuberosum HOM05D003336 ORTHO05D003807 5.1e-11 71.2 68 55.9
Cc04_g08950 Coffea canephora HOM05D003336 ORTHO05D003807 6.6e-11 70.9 68 58.8
ATR0796G111 Amborella trichopoda HOM05D003336 ORTHO05D003807 1.1e-10 70.1 65 56.9
FvH4_3g16550 Fragaria vesca HOM05D003336 ORTHO05D003807 1.5e-10 69.7 69 55.1
FAN06G1925 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.5e-10 69.7 69 55.1
FAN11G0541 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.5e-10 69.7 69 55.1
FAN16G2332 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.5e-10 69.7 69 55.1
FAN25G0065 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.5e-10 69.7 69 55.1
Lsat_1_v5_gn_3_6100 Lactuca sativa HOM05D003336 ORTHO05D003807 1.5e-10 69.7 68 51.5
PSO210G2800 Papaver somniferum HOM05D003336 ORTHO05D003807 1.5e-10 69.7 72 54.2
Phvul.006G109300 Phaseolus vulgaris HOM05D003336 ORTHO05D003807 1.5e-10 69.7 77 54.5
RcHm_v2.0_Chr1g0331181 Rosa chinensis HOM05D003336 ORTHO05D003807 1.5e-10 69.7 69 55.1
SGA_v2.0_scaffold1G00608 Striga asiatica HOM05D003336 ORTHO05D003807 1.5e-10 69.7 73 49.3
CiPaw.02G054300 Carya illinoinensis HOM05D003336 ORTHO05D003807 1.9e-10 69.3 66 59.1
MELO3C013276.2 Cucumis melo HOM05D003336 ORTHO05D003807 1.9e-10 69.3 65 58.5
HPP92_018106 Vanilla planifolia HOM05D003336 ORTHO05D003807 1.9e-10 69.3 70 54.3
CAN.G149.29 Capsicum annuum HOM05D003336 ORTHO05D003807 2.5e-10 68.9 66 56.1
CsaV3_5G026930 Cucumis sativus L. HOM05D003336 ORTHO05D003807 2.5e-10 68.9 65 60.0
ECA246G0584 Erigeron canadensis HOM05D003336 ORTHO05D003807 2.5e-10 68.9 74 47.3
FAN03G2504 Fragaria x ananassa HOM05D003336 ORTHO05D003807 2.5e-10 68.9 69 55.1
VMungo0540G1651 Vigna mungo HOM05D003336 ORTHO05D003807 2.5e-10 68.9 77 53.2
Atru.chr6.1044 Acer truncatum HOM05D003336 ORTHO05D003807 3.3e-10 68.6 74 54.1
SEGI_39923 Sequoiadendron giganteum HOM05D003336 ORTHO05D003807 3.3e-10 68.6 65 55.4
A01p13940 Brassica napus HOM05D003336 ORTHO05D003807 4.3e-10 68.2 71 50.7
BraA01t01340Z Brassica rapa HOM05D003336 ORTHO05D003807 4.3e-10 68.2 71 50.7
FAN21G2317 Fragaria x ananassa HOM05D003336 ORTHO05D003807 4.3e-10 68.2 69 53.6
Manes.04G043500 Manihot esculenta HOM05D003336 ORTHO05D003807 4.3e-10 68.2 68 54.4
BolC1t01638H Brassica oleracea HOM05D003336 ORTHO05D003807 5.6e-10 67.8 71 50.7
Potri.017G029200 Populus trichocarpa HOM05D003336 ORTHO05D003807 5.6e-10 67.8 67 55.2
Aqoxy7G02152 Aquilegia oxysepala HOM05D003336 ORTHO05D003807 7.3e-10 67.4 75 54.7
BcaC09g51096 Brassica carinata HOM05D003336 ORTHO05D003807 7.3e-10 67.4 71 50.7
C01p16980 Brassica napus HOM05D003336 ORTHO05D003807 7.3e-10 67.4 71 50.7
Lj1g0015608 Lotus japonicus HOM05D003336 ORTHO05D003807 7.3e-10 67.4 64 57.8
Psat6g173800 Pisum sativum HOM05D003336 ORTHO05D003807 7.3e-10 67.4 77 51.9
ClCG10G008650 Citrullus lanatus HOM05D003336 ORTHO05D003807 9.6e-10 67.0 65 56.9
C01p17150 Brassica napus HOM05D003336 ORTHO05D003807 1.3e-09 66.6 71 49.3
BolC1t01652H Brassica oleracea HOM05D003336 ORTHO05D003807 1.3e-09 66.6 71 49.3
Aa31LG6G4680 Aethionema arabicum HOM05D003336 ORTHO05D003807 1.6e-09 66.2 67 50.7
BcaC09g51089 Brassica carinata HOM05D003336 ORTHO05D003807 1.6e-09 66.2 71 49.3
Thhalv10025586m.g Eutrema salsugineum HOM05D003336 ORTHO05D003807 1.6e-09 66.2 71 47.9
PGR083G1911 Punica granatum HOM05D003336 ORTHO05D003807 1.6e-09 66.2 66 54.5
FAN10G0305 Fragaria x ananassa HOM05D003336 ORTHO05D003807 2.1e-09 65.9 69 53.6
FAN10G0412 Fragaria x ananassa HOM05D003336 ORTHO05D003807 2.1e-09 65.9 69 53.6
Medtr1g090817 Medicago truncatula HOM05D003336 ORTHO05D003807 2.8e-09 65.5 77 50.6
TPR.G37811 Trifolium pratense HOM05D003336 ORTHO05D003807 2.8e-09 65.5 77 50.6
BcaNung01042 Brassica carinata HOM05D003336 ORTHO05D003807 3.6e-09 65.1 71 47.9
Lalb_Chr18g0044261 Lupinus albus HOM05D003336 ORTHO05D003807 4.8e-09 64.7 64 54.7
AL7G30880 Arabidopsis lyrata HOM05D003336 ORTHO05D003807 6.2e-09 64.3 66 50.0
AT4G22720 Arabidopsis thaliana HOM05D003336 ORTHO05D003807 6.2e-09 64.3 66 50.0
Prupe.1G196300 Prunus persica HOM05D003336 ORTHO05D003807 6.2e-09 64.3 68 54.4
SpUn1040_0020 Schrenkiella parvula HOM05D003336 ORTHO05D003807 6.2e-09 64.3 71 46.5
HanXRQChr17g0533451 Helianthus annuus HOM05D003336 ORTHO05D003807 8.1e-09 63.9 71 49.3
C01p17060 Brassica napus HOM05D003336 ORTHO05D003807 1.1e-08 63.5 67 49.3
C01p17090 Brassica napus HOM05D003336 ORTHO05D003807 1.1e-08 63.5 67 49.3
BolC1t01648H Brassica oleracea HOM05D003336 ORTHO05D003807 1.1e-08 63.5 67 49.3
Carub.0007s1861 Capsella rubella HOM05D003336 ORTHO05D003807 1.1e-08 63.5 67 47.8
SHI23517 Sapria himalayana HOM05D003336 ORTHO05D003807 1.1e-08 63.5 66 53.0
CARHR229640 Cardamine hirsuta HOM05D003336 ORTHO05D003807 1.4e-08 63.2 67 47.8
Oeu061601.1 Olea europaea HOM05D003336 ORTHO05D003807 1.4e-08 63.2 63 57.1
C01p17130 Brassica napus HOM05D003336 ORTHO05D003807 5.3e-08 61.2 71 46.5
BolC1t01651H Brassica oleracea HOM05D003336 ORTHO05D003807 5.3e-08 61.2 71 46.5
arahy.Tifrunner.gnm1.ann1.UX0YUZ Arachis hypogaea HOM05D003336 ORTHO05D003807 1.5e-07 59.7 63 54.0
CSS0006022 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 2.0e-07 59.3 57 57.9
SMO196G0197 Selaginella moellendorffii HOM05D003336 ORTHO05D003807 2.6e-07 58.9 64 46.9
CSS0001398 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 5.8e-07 57.8 61 55.7
Mapoly0054s0003 Marchantia polymorpha HOM05D003336 ORTHO05D003807 7.6e-07 57.4 88 37.5
Zm00001eb442100 Zea mays HOM05D003336 ORTHO05D003807 2.9e-06 55.5 47 59.6
AUR62003310 Chenopodium quinoa HOM05D003336 ORTHO05D003807 3.8e-06 55.1 56 53.6


User provided reference genes

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