Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049288 Camellia sinensis var. sinensis HOM05D004530 ORTHO05D005839 1.0e-37 159.5 74 100.0
CSS0047129 Camellia sinensis var. sinensis HOM05D004530 ORTHO05D005839 3.0e-37 157.9 74 98.6
SalBow5G0820 Salvia bowleyana HOM05D004530 ORTHO05D005839 4.9e-16 87.4 44 90.9
vmacro13497 Vaccinium macrocarpon HOM05D004530 ORTHO05D005839 8.4e-16 86.7 40 95.0
Actinidia12143 Actinidia chinensis HOM05D004530 ORTHO05D005839 4.2e-15 84.3 40 92.5
Nitab4.5_0000920g0020 Nicotiana tabacum HOM05D004530 ORTHO05D005839 4.2e-15 84.3 40 90.0
Nitab4.5_0007027g0030 Nicotiana tabacum HOM05D004530 ORTHO05D005839 4.2e-15 84.3 40 90.0
MSTRG.20690 Avicennia marina HOM05D004530 ORTHO05D005839 9.3e-15 83.2 40 92.5
Cc02_g25120 Coffea canephora HOM05D004530 ORTHO05D005839 9.3e-15 83.2 40 90.0
Hma1.2p1_0041F.1_g025350 Hydrangea macrophylla HOM05D004530 ORTHO05D005839 1.2e-14 82.8 40 90.0
SGA_v2.0_scaffold52G19226 Striga asiatica HOM05D004530 ORTHO05D005839 1.6e-14 82.4 53 71.7
Hund17085 Selenicereus undatus HOM05D004530 ORTHO05D005839 2.7e-14 81.6 41 82.9
unitig_26.g9593 Utricularia gibba HOM05D004530 ORTHO05D005839 2.7e-14 81.6 42 88.1
CAN.G1473.6 Capsicum annuum HOM05D004530 ORTHO05D005839 4.6e-14 80.9 40 87.5
ECA240G1126 Erigeron canadensis HOM05D004530 ORTHO05D005839 6.0e-14 80.5 40 87.5
Lsat_1_v5_gn_3_126420 Lactuca sativa HOM05D004530 ORTHO05D005839 6.0e-14 80.5 40 87.5
HanXRQChr03g0093061 Helianthus annuus HOM05D004530 ORTHO05D005839 7.9e-14 80.1 40 85.0
Ah.05g173100 Amaranthus hybridus HOM05D004530 ORTHO05D005839 1.0e-13 79.7 40 85.0
EL10Ac1g00762 Beta vulgaris HOM05D004530 ORTHO05D005839 1.0e-13 79.7 40 85.0
Haze_02848 Corylus avellana HOM05D004530 ORTHO05D005839 1.0e-13 79.7 74 54.1
MBI04_g41763_MAGBIO Magnolia biondii HOM05D004530 ORTHO05D005839 1.0e-13 79.7 43 79.1
Rhsim07G0036000 Rhododendron simsii HOM05D004530 ORTHO05D005839 1.0e-13 79.7 40 87.5
Solyc01g090230.3 Solanum lycopersicum HOM05D004530 ORTHO05D005839 1.3e-13 79.3 40 87.5
Sopen01g036030 Solanum pennellii HOM05D004530 ORTHO05D005839 1.3e-13 79.3 40 87.5
Dinv44062 Davidia involucrata HOM05D004530 ORTHO05D005839 2.3e-13 78.6 40 87.5
Ah.05g174030 Amaranthus hybridus HOM05D004530 ORTHO05D005839 3.0e-13 78.2 42 81.0
MELO3C005943.2 Cucumis melo HOM05D004530 ORTHO05D005839 3.0e-13 78.2 52 67.3
CsaV3_3G007220 Cucumis sativus L. HOM05D004530 ORTHO05D005839 3.0e-13 78.2 52 67.3
Sc26g0001580 Simmondsia chinensis HOM05D004530 ORTHO05D005839 3.0e-13 78.2 52 69.2
Nn6g33827 Nelumbo nucifera HOM05D004530 ORTHO05D005839 3.9e-13 77.8 40 82.5
AUR62013743 Chenopodium quinoa HOM05D004530 ORTHO05D005839 6.7e-13 77.0 40 82.5
AUR62023408 Chenopodium quinoa HOM05D004530 ORTHO05D005839 6.7e-13 77.0 40 82.5
AUR62043872 Chenopodium quinoa HOM05D004530 ORTHO05D005839 6.7e-13 77.0 40 82.5
Eucgr.E01549 Eucalyptus grandis HOM05D004530 ORTHO05D005839 8.7e-13 76.6 67 56.7
MD07G1109200 Malus domestica HOM05D004530 ORTHO05D005839 8.7e-13 76.6 40 80.0
Potri.014G047600 Populus trichocarpa HOM05D004530 ORTHO05D005839 8.7e-13 76.6 40 82.5
TAR629G3313 Trochodendron aralioides HOM05D004530 ORTHO05D005839 8.7e-13 76.6 40 82.5
HPP92_022509 Vanilla planifolia HOM05D004530 ORTHO05D005839 8.7e-13 76.6 40 80.0
BcaB03g13633 Brassica carinata HOM05D004530 ORTHO05D005839 1.1e-12 76.3 63 55.6
A10p00110 Brassica napus HOM05D004530 ORTHO05D005839 1.1e-12 76.3 63 55.6
C05p00080 Brassica napus HOM05D004530 ORTHO05D005839 1.1e-12 76.3 63 55.6
BolC5t28795H Brassica oleracea HOM05D004530 ORTHO05D005839 1.1e-12 76.3 63 55.6
BraA10t42289Z Brassica rapa HOM05D004530 ORTHO05D005839 1.1e-12 76.3 63 55.6
Carub.0001s0010 Capsella rubella HOM05D004530 ORTHO05D005839 1.1e-12 76.3 63 55.6
CARHR000210 Cardamine hirsuta HOM05D004530 ORTHO05D005839 1.1e-12 76.3 63 55.6
Thhalv10007106m.g Eutrema salsugineum HOM05D004530 ORTHO05D005839 1.1e-12 76.3 63 55.6
PGR042G2176 Punica granatum HOM05D004530 ORTHO05D005839 1.1e-12 76.3 72 54.2
TWI59G1339 Tripterygium wilfordii HOM05D004530 ORTHO05D005839 1.1e-12 76.3 52 65.4
Zm00001eb105340 Zea mays HOM05D004530 ORTHO05D005839 1.1e-12 76.3 40 80.0
Atru.chr5.126 Acer truncatum HOM05D004530 ORTHO05D005839 1.5e-12 75.9 40 77.5
Aa31LG1G11490 Aethionema arabicum HOM05D004530 ORTHO05D005839 1.5e-12 75.9 63 54.0
ATR0057G115 Amborella trichopoda HOM05D004530 ORTHO05D005839 1.5e-12 75.9 40 77.5
CiPaw.13G026100 Carya illinoinensis HOM05D004530 ORTHO05D005839 1.5e-12 75.9 40 77.5
QL04p030285 Quercus lobata HOM05D004530 ORTHO05D005839 1.5e-12 75.9 40 77.5
Sabra14G0034600 Salix brachista HOM05D004530 ORTHO05D005839 1.5e-12 75.9 40 80.0
Lalb_Chr12g0210571 Lupinus albus HOM05D004530 ORTHO05D005839 1.9e-12 75.5 52 65.4
Medtr8g006895 Medicago truncatula HOM05D004530 ORTHO05D005839 1.9e-12 75.5 40 80.0
TPR.G33134 Trifolium pratense HOM05D004530 ORTHO05D005839 1.9e-12 75.5 40 80.0
AL1G10110 Arabidopsis lyrata HOM05D004530 ORTHO05D005839 2.5e-12 75.1 63 52.4
AT1G02120 Arabidopsis thaliana HOM05D004530 ORTHO05D005839 2.5e-12 75.1 63 52.4
CDE11G0737 Ceratophyllum demersum HOM05D004530 ORTHO05D005839 2.5e-12 75.1 40 77.5
MD02G1212800 Malus domestica HOM05D004530 ORTHO05D005839 2.5e-12 75.1 40 77.5
Manes.01G274600 Manihot esculenta HOM05D004530 ORTHO05D005839 2.5e-12 75.1 40 77.5
Zm00001eb321770 Zea mays HOM05D004530 ORTHO05D005839 2.5e-12 75.1 40 77.5
Ciclev10019258m.g Citrus clementina HOM05D004530 ORTHO05D005839 3.3e-12 74.7 40 77.5
Lalb_Chr07g0195421 Lupinus albus HOM05D004530 ORTHO05D005839 3.3e-12 74.7 52 63.5
GSVIVG01018280001 Vitis vinifera HOM05D004530 ORTHO05D005839 3.3e-12 74.7 52 65.4
Glyma.20G070800 Glycine max HOM05D004530 ORTHO05D005839 4.3e-12 74.3 52 63.5
Gohir.A08G138600 Gossypium hirsutum HOM05D004530 ORTHO05D005839 4.3e-12 74.3 40 77.5
Gohir.D08G159900 Gossypium hirsutum HOM05D004530 ORTHO05D005839 4.3e-12 74.3 40 77.5
Gorai.004G166100 Gossypium raimondii HOM05D004530 ORTHO05D005839 4.3e-12 74.3 40 77.5
Psat4g224840 Pisum sativum HOM05D004530 ORTHO05D005839 4.3e-12 74.3 42 73.8
RcHm_v2.0_Chr1g0347921 Rosa chinensis HOM05D004530 ORTHO05D005839 4.3e-12 74.3 64 56.2
TAR375G0493 Trochodendron aralioides HOM05D004530 ORTHO05D005839 4.3e-12 74.3 40 77.5
arahy.Tifrunner.gnm1.ann1.BH8PB4 Arachis hypogaea HOM05D004530 ORTHO05D005839 5.6e-12 73.9 40 77.5
arahy.Tifrunner.gnm1.ann1.WR8IC8 Arachis hypogaea HOM05D004530 ORTHO05D005839 5.6e-12 73.9 40 77.5
Ca_25804_v3 Cicer arietinum L. HOM05D004530 ORTHO05D005839 5.6e-12 73.9 40 77.5
COL.COLO4_12407 Corchorus olitorius HOM05D004530 ORTHO05D005839 5.6e-12 73.9 40 77.5
Duzib133G0606 Durio zibethinus HOM05D004530 ORTHO05D005839 5.6e-12 73.9 52 63.5
Prupe.2G131900 Prunus persica HOM05D004530 ORTHO05D005839 7.4e-12 73.6 40 75.0
Gorai.004G070300 Gossypium raimondii HOM05D004530 ORTHO05D005839 9.6e-12 73.2 56 58.9
Lj3g0003084 Lotus japonicus HOM05D004530 ORTHO05D005839 9.6e-12 73.2 40 75.0
Sed0010787 Sechium edule HOM05D004530 ORTHO05D005839 9.6e-12 73.2 40 75.0
CDE06G1928 Ceratophyllum demersum HOM05D004530 ORTHO05D005839 1.3e-11 72.8 40 75.0
Duzib138G0269 Durio zibethinus HOM05D004530 ORTHO05D005839 1.3e-11 72.8 40 75.0
Glyma.10G120400 Glycine max HOM05D004530 ORTHO05D005839 1.3e-11 72.8 40 75.0
THA.LOC104817000 Tarenaya hassleriana HOM05D004530 ORTHO05D005839 1.3e-11 72.8 40 77.5
FvH4_7g10200 Fragaria vesca HOM05D004530 ORTHO05D005839 2.1e-11 72.0 40 72.5
FAN01G0552 Fragaria x ananassa HOM05D004530 ORTHO05D005839 2.1e-11 72.0 40 72.5
FAN06G2217 Fragaria x ananassa HOM05D004530 ORTHO05D005839 2.1e-11 72.0 40 72.5
FAN06G5079 Fragaria x ananassa HOM05D004530 ORTHO05D005839 2.1e-11 72.0 40 72.5
FAN10G1666 Fragaria x ananassa HOM05D004530 ORTHO05D005839 2.1e-11 72.0 40 72.5
FAN10G4098 Fragaria x ananassa HOM05D004530 ORTHO05D005839 2.1e-11 72.0 40 72.5
PSO675G1201 Papaver somniferum HOM05D004530 ORTHO05D005839 2.1e-11 72.0 40 75.0
PSO732G0778 Papaver somniferum HOM05D004530 ORTHO05D005839 2.1e-11 72.0 40 75.0
PSO832G0798 Papaver somniferum HOM05D004530 ORTHO05D005839 2.1e-11 72.0 40 75.0
Phvul.010G049900 Phaseolus vulgaris HOM05D004530 ORTHO05D005839 2.1e-11 72.0 40 72.5
VMungo0331G0336 Vigna mungo HOM05D004530 ORTHO05D005839 2.1e-11 72.0 40 72.5
TWI14G0541 Tripterygium wilfordii HOM05D004530 ORTHO05D005839 2.8e-11 71.6 40 75.0
Gohir.D12G099900 Gossypium hirsutum HOM05D004530 ORTHO05D005839 3.7e-11 71.2 40 70.0
Gorai.008G108800 Gossypium raimondii HOM05D004530 ORTHO05D005839 3.7e-11 71.2 40 70.0
CDE06G0463 Ceratophyllum demersum HOM05D004530 ORTHO05D005839 6.2e-11 70.5 40 70.0
FAN03G1354 Fragaria x ananassa HOM05D004530 ORTHO05D005839 6.2e-11 70.5 40 70.0
Gohir.D08G067550 Gossypium hirsutum HOM05D004530 ORTHO05D005839 6.2e-11 70.5 40 72.5
Aqoxy7G00763 Aquilegia oxysepala HOM05D004530 ORTHO05D005839 8.1e-11 70.1 40 75.0
Thecc.01G394900 Theobroma cacao HOM05D004530 ORTHO05D005839 8.1e-11 70.1 40 72.5
Potri.002G137800 Populus trichocarpa HOM05D004530 ORTHO05D005839 1.1e-10 69.7 52 61.5
SMO228G0106 Selaginella moellendorffii HOM05D004530 ORTHO05D005839 1.8e-10 68.9 56 55.4
Mapoly0083s0023 Marchantia polymorpha HOM05D004530 ORTHO05D005839 2.4e-10 68.6 40 70.0
SEGI_01894 Sequoiadendron giganteum HOM05D004530 ORTHO05D005839 2.4e-10 68.6 41 65.9
AagrBONN_evm.TU.Sc2ySwM_117.1176 Anthoceros agrestis HOM05D004530 ORTHO05D005839 3.1e-10 68.2 40 67.5
Gohir.A08G058400 Gossypium hirsutum HOM05D004530 ORTHO05D005839 3.1e-10 68.2 40 70.0
Pp3c9_25660 Physcomitrium patens HOM05D004530 ORTHO05D005839 5.3e-10 67.4 57 52.6
CDE07G0055 Ceratophyllum demersum HOM05D004530 ORTHO05D005839 1.6e-06 55.8 30 73.3
MCO09G309 Micromonas commoda HOM05D004530 ORTHO05D005839 1.6e-06 55.8 65 41.5
Cre16.g664050 Chlamydomonas reinhardtii HOM05D004530 ORTHO05D005839 2.1e-06 55.5 35 65.7


User provided reference genes

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