Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049283 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 9.6e-247 856.3 406 100.0
CSS0037760 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 5.3e-213 744.2 406 89.7
Actinidia20108 Actinidia chinensis HOM05D005922 ORTHO05D006934 2.0e-188 662.5 408 78.9
Rhsim09G0086000 Rhododendron simsii HOM05D005922 ORTHO05D006934 6.8e-184 647.5 401 79.1
TAR622G0311 Trochodendron aralioides HOM05D005922 ORTHO05D006934 3.0e-155 552.4 405 67.9
Lj3A860T49 Lonicera japonica HOM05D005922 ORTHO05D006934 3.3e-154 548.9 403 68.0
GSVIVG01011600001 Vitis vinifera HOM05D005922 ORTHO05D006934 8.7e-147 524.2 398 65.6
Nn4g24501 Nelumbo nucifera HOM05D005922 ORTHO05D006934 2.4e-144 516.2 409 62.6
QL03p038994 Quercus lobata HOM05D005922 ORTHO05D006934 7.6e-143 511.1 393 63.9
RcHm_v2.0_Chr4g0442081 Rosa chinensis HOM05D005922 ORTHO05D006934 3.8e-142 508.8 398 65.6
Manes.17G088400 Manihot esculenta HOM05D005922 ORTHO05D006934 1.1e-141 507.3 401 62.6
Ciclev10015473m.g Citrus clementina HOM05D005922 ORTHO05D006934 1.9e-141 506.5 403 63.8
MD16G1013700 Malus domestica HOM05D005922 ORTHO05D006934 3.2e-141 505.8 390 65.4
FAN17G1819 Fragaria x ananassa HOM05D005922 ORTHO05D006934 1.6e-140 503.4 390 65.1
Cc11_g05840 Coffea canephora HOM05D005922 ORTHO05D006934 6.0e-140 501.5 404 62.4
FAN12G4156 Fragaria x ananassa HOM05D005922 ORTHO05D006934 1.3e-139 500.4 391 64.5
CiPaw.06G059000 Carya illinoinensis HOM05D005922 ORTHO05D006934 3.9e-139 498.8 403 63.5
FvH4_4g33040 Fragaria vesca HOM05D005922 ORTHO05D006934 3.9e-139 498.8 391 64.5
CAN.G282.103 Capsicum annuum HOM05D005922 ORTHO05D006934 5.1e-139 498.4 402 60.0
Aqoxy3G04113 Aquilegia oxysepala HOM05D005922 ORTHO05D006934 6.6e-139 498.0 398 62.3
Lalb_Chr13g0293631 Lupinus albus HOM05D005922 ORTHO05D006934 1.5e-138 496.9 392 62.5
TWI74G0639 Tripterygium wilfordii HOM05D005922 ORTHO05D006934 2.5e-138 496.1 397 61.5
MSTRG.418 Avicennia marina HOM05D005922 ORTHO05D006934 2.8e-137 492.7 392 62.8
Solyc01g005100.4 Solanum lycopersicum HOM05D005922 ORTHO05D006934 2.8e-137 492.7 403 59.6
FAN07G1633 Fragaria x ananassa HOM05D005922 ORTHO05D006934 3.6e-137 492.3 391 63.9
PGSC0003DMG400022790 Solanum tuberosum HOM05D005922 ORTHO05D006934 1.4e-136 490.3 396 59.6
Sopen01g001120 Solanum pennellii HOM05D005922 ORTHO05D006934 2.4e-136 489.6 403 59.6
FAN22G1644 Fragaria x ananassa HOM05D005922 ORTHO05D006934 4.0e-136 488.8 398 63.8
Dinv14365 Davidia involucrata HOM05D001297 ORTHO05D001135 6.9e-136 488.0 371 67.7
PSO478G3575 Papaver somniferum HOM05D005922 ORTHO05D006934 3.4e-135 485.7 402 61.2
HanXRQChr17g0566161 Helianthus annuus HOM05D005922 ORTHO05D006934 4.5e-135 485.3 393 59.5
Migut.L00620 Erythranthe guttata HOM05D005922 ORTHO05D006934 5.8e-135 485.0 394 60.2
Lj4g0028223 Lotus japonicus HOM05D005922 ORTHO05D006934 7.6e-135 484.6 394 60.9
ECA234G0994 Erigeron canadensis HOM05D005922 ORTHO05D006934 1.1e-133 480.7 396 59.3
Gorai.012G183700 Gossypium raimondii HOM05D005922 ORTHO05D006934 9.3e-133 477.6 391 60.4
PSO017G1338 Papaver somniferum HOM05D005922 ORTHO05D006934 1.6e-132 476.9 396 60.9
Eucgr.B02658 Eucalyptus grandis HOM05D005922 ORTHO05D006934 3.0e-131 472.6 396 59.6
Phvul.002G181600 Phaseolus vulgaris HOM05D005922 ORTHO05D006934 8.7e-131 471.1 393 57.8
TPR.G5128 Trifolium pratense HOM05D005922 ORTHO05D006934 5.6e-130 468.4 389 60.2
Sc10g0003730 Simmondsia chinensis HOM05D005922 ORTHO05D006934 9.6e-130 467.6 377 61.5
arahy.Tifrunner.gnm1.ann1.DV72QU Arachis hypogaea HOM05D005922 ORTHO05D006934 3.7e-129 465.7 392 57.9
Psat7g084400 Pisum sativum HOM05D005922 ORTHO05D006934 4.8e-129 465.3 393 59.0
Glyma.08G093700 Glycine max HOM05D005922 ORTHO05D006934 1.4e-128 463.8 395 58.7
Prupe.1G337400 Prunus persica HOM05D005922 ORTHO05D006934 1.5e-127 460.3 400 60.2
Ca_11580_v3 Cicer arietinum L. HOM05D005922 ORTHO05D006934 2.0e-127 459.9 397 57.4
Lsat_1_v5_gn_4_23861 Lactuca sativa HOM05D005922 ORTHO05D006934 2.0e-127 459.9 377 61.0
Duzib248G0719 Durio zibethinus HOM05D005922 ORTHO05D006934 3.4e-127 459.1 391 58.8
Thhalv10018688m.g Eutrema salsugineum HOM05D005922 ORTHO05D006934 5.8e-127 458.4 392 61.0
AL2G26830 Arabidopsis lyrata HOM05D005922 ORTHO05D006934 2.9e-126 456.1 401 59.6
Hund05787 Selenicereus undatus HOM05D005922 ORTHO05D006934 8.4e-126 454.5 437 54.7
Carub.0002s1456 Capsella rubella HOM05D005922 ORTHO05D006934 1.1e-125 454.1 396 59.8
Potri.008G139000 Populus trichocarpa HOM05D005922 ORTHO05D006934 1.1e-125 454.1 387 60.7
BcaB03g15398 Brassica carinata HOM05D005922 ORTHO05D006934 1.4e-125 453.8 397 59.9
AUR62007770 Chenopodium quinoa HOM05D005922 ORTHO05D006934 6.0e-124 448.4 402 56.0
BcaC08g45999 Brassica carinata HOM05D005922 ORTHO05D006934 1.1e-122 444.1 394 58.1
BolC6t38893H Brassica oleracea HOM05D005922 ORTHO05D006934 1.1e-122 444.1 394 58.1
EL10Ac6g14554 Beta vulgaris HOM05D005922 ORTHO05D006934 1.5e-122 443.7 404 54.7
C06p37940 Brassica napus HOM05D005922 ORTHO05D006934 3.3e-122 442.6 396 58.6
Sed0026869 Sechium edule HOM05D005922 ORTHO05D006934 7.4e-122 441.4 400 56.5
BraA07t30847Z Brassica rapa HOM05D005922 ORTHO05D006934 3.7e-121 439.1 396 57.3
unitig_748.g7591 Utricularia gibba HOM05D005922 ORTHO05D006934 3.7e-121 439.1 388 57.0
AUR62002964 Chenopodium quinoa HOM05D005922 ORTHO05D006934 1.1e-120 437.6 406 54.2
A07p32170 Brassica napus HOM05D005922 ORTHO05D006934 1.8e-120 436.8 396 57.3
Sabra08G0105600 Salix brachista HOM05D005922 ORTHO05D006934 4.5e-119 432.2 415 55.4
PGR102G1589 Punica granatum HOM05D005922 ORTHO05D006934 7.6e-119 431.4 407 56.0
MELO3C020028.2 Cucumis melo HOM05D005922 ORTHO05D006934 1.0e-118 431.0 395 56.2
THA.LOC104809799 Tarenaya hassleriana HOM05D005922 ORTHO05D006934 1.0e-118 431.0 400 57.2
Gohir.D04G188200 Gossypium hirsutum HOM05D005922 ORTHO05D006934 2.2e-118 429.9 326 63.8
CsaV3_5G013220 Cucumis sativus L. HOM05D005922 ORTHO05D006934 3.8e-118 429.1 394 56.1
SGA_v2.0_scaffold57G20105 Striga asiatica HOM05D005922 ORTHO05D006934 1.1e-117 427.6 400 56.5
Nitab4.5_0000521g0110 Nicotiana tabacum HOM05D005922 ORTHO05D006934 1.6e-116 423.7 449 50.3
Gohir.A04G143900 Gossypium hirsutum HOM05D005922 ORTHO05D006934 2.3e-115 419.9 347 60.2
DCAR_026820 Daucus carota HOM05D005922 ORTHO05D006934 1.3e-113 414.1 374 56.7
Sp5g23080 Schrenkiella parvula HOM05D005922 ORTHO05D006934 2.2e-113 413.3 345 61.7
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 8.2e-113 411.4 381 57.7
ClCG11G001170 Citrullus lanatus HOM05D005922 ORTHO05D006934 8.2e-113 411.4 395 54.9
MBI19_g25220_MAGBIO Magnolia biondii HOM05D005922 ORTHO05D006934 4.1e-112 409.1 404 53.7
Nitab4.5_0001935g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 3.8e-110 402.5 417 51.6
ATR0598G299 Amborella trichopoda HOM05D005922 ORTHO05D006934 2.5e-106 389.8 399 50.6
CANSAT78G1412 Cannabis sativa HOM05D005922 ORTHO05D006934 1.0e-102 377.9 403 50.1
CDE05G0039 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 1.3e-102 377.5 406 48.5
SHI04278 Sapria himalayana HOM05D005922 ORTHO05D006934 3.6e-100 369.4 396 49.7
SalBow7G4797 Salvia bowleyana HOM05D005922 ORTHO05D006934 7.0e-96 355.1 421 48.0
COL.COLO4_27589 Corchorus olitorius HOM05D005922 ORTHO05D006934 2.1e-92 343.6 340 55.3
Cpa.g.sc2.132 Carica papaya HOM05D005922 ORTHO05D006934 4.7e-92 342.4 335 53.7
Os03g0238700 Oryza sativa ssp. japonica HOM05D005922 ORTHO05D006934 3.0e-91 339.7 299 55.2
Glyma.05G138500 Glycine max HOM05D005922 ORTHO05D006934 1.1e-90 337.8 289 59.2
BcaC08g45997 Brassica carinata HOM05D005922 ORTHO05D006934 2.2e-89 333.6 324 55.6
Cfa015069 Carpinus fangiana HOM05D005922 ORTHO05D006934 5.3e-88 328.9 397 46.3
Haze_10819 Corylus avellana HOM05D005922 ORTHO05D006934 7.7e-87 325.1 238 68.1
Ah.03g138110 Amaranthus hybridus HOM05D005922 ORTHO05D006934 1.9e-85 320.5 400 45.8
Atru.chr11.736 Acer truncatum HOM05D005922 ORTHO05D006934 4.2e-85 319.3 395 45.3
Pp3c27_7680 Physcomitrium patens HOM05D005922 ORTHO05D006934 5.2e-83 312.4 470 38.7
AT1G68080 Arabidopsis thaliana HOM05D005922 ORTHO05D006934 2.8e-81 306.6 342 51.2
arahy.Tifrunner.gnm1.ann1.F0VD4J Arachis hypogaea HOM05D005922 ORTHO05D006934 1.7e-73 280.8 282 51.1
AagrBONN_evm.TU.Sc2ySwM_117.2043 Anthoceros agrestis HOM05D005922 ORTHO05D006934 7.0e-72 275.4 313 47.9
Peaxi162Scf01111g00310 Petunia axillaris HOM05D005922 ORTHO05D006934 1.4e-67 261.2 307 46.3
Nitab4.5_0001294g0040 Nicotiana tabacum HOM05D005922 ORTHO05D006934 2.2e-65 253.8 164 68.3
CARHR060740 Cardamine hirsuta HOM05D005922 ORTHO05D006934 6.6e-62 242.3 282 50.4
Migut.O00731 Erythranthe guttata HOM05D005922 ORTHO05D006934 1.5e-61 241.1 253 49.8
Thecc.02G304700 Theobroma cacao HOM05D005922 ORTHO05D006934 8.0e-60 235.3 271 49.8
arahy.Tifrunner.gnm1.ann1.05ZMZX Arachis hypogaea HOM05D005922 ORTHO05D006934 2.9e-57 226.9 142 72.5
SEGI_26303 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 3.7e-57 226.5 127 77.2
arahy.Tifrunner.gnm1.ann1.GW2J4P Arachis hypogaea HOM05D006503 ORTHO05D008116 8.0e-52 208.8 227 47.6
HPP92_016714 Vanilla planifolia HOM05D005922 ORTHO05D006934 1.4e-51 208.0 291 41.9
Oeu034664.1 Olea europaea HOM05D005922 ORTHO05D006934 1.7e-49 201.1 109 84.4
Nitab4.5_0001294g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 3.7e-49 199.9 150 62.0
VMungo0251G2725 Vigna mungo HOM05D005922 ORTHO05D006934 1.9e-48 197.6 227 45.8
Mapoly0075s0019 Marchantia polymorpha HOM05D005922 ORTHO05D006934 3.2e-48 196.8 273 40.7
VMungo0251G3333 Vigna mungo HOM05D005922 ORTHO05D006934 1.1e-43 181.8 102 76.5
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 3.4e-42 176.8 120 65.8
BcaB05g23450 Brassica carinata HOM05D005922 ORTHO05D006934 5.4e-40 169.5 113 69.0
Cre12.g486551 Chlamydomonas reinhardtii HOM05D005922 ORTHO05D006934 1.6e-39 167.9 225 42.7
Manes.18G025338 Manihot esculenta HOM05D005922 ORTHO05D006934 2.3e-38 164.1 90 82.2
arahy.Tifrunner.gnm1.ann1.P482X0 Arachis hypogaea HOM05D005922 ORTHO05D006934 1.5e-37 161.4 96 75.0
Oeu031680.1 Olea europaea HOM05D005922 ORTHO05D006934 9.9e-34 148.7 131 58.0
Zm00001eb399130 Zea mays HOM05D005922 ORTHO05D006934 8.1e-28 129.0 84 61.9
BcaB02g11286 Brassica carinata HOM05D005922 ORTHO05D006934 1.7e-25 121.3 113 54.9
arahy.Tifrunner.gnm1.ann1.62WV2A Arachis hypogaea HOM05D005922 ORTHO05D006934 3.3e-21 107.1 102 51.0
arahy.Tifrunner.gnm1.ann1.QG6U7W Arachis hypogaea HOM05D005922 ORTHO05D006934 3.3e-21 107.1 102 51.0
PRCOL_00005504 Prasinoderma coloniale HOM05D005922 ORTHO05D006934 3.3e-21 107.1 214 34.6
arahy.Tifrunner.gnm1.ann1.B3UXS8 Arachis hypogaea HOM05D005922 ORTHO05D006934 9.6e-21 105.5 69 69.6
Haze_10820 Corylus avellana HOM05D005922 ORTHO05D006934 1.1e-16 92.0 90 55.6
arahy.Tifrunner.gnm1.ann1.39MP9Z Arachis hypogaea HOM05D002181 ORTHO05D003287 9.3e-16 89.0 51 72.5
arahy.Tifrunner.gnm1.ann1.10JCRR Arachis hypogaea HOM05D000690 ORTHO05D006934 2.1e-15 87.8 50 72.0
arahy.Tifrunner.gnm1.ann1.XTWJ7M Arachis hypogaea HOM05D002181 ORTHO05D006934 2.7e-15 87.4 48 77.1
arahy.Tifrunner.gnm1.ann1.043Q1E Arachis hypogaea HOM05D005922 ORTHO05D006934 1.0e-14 85.5 49 75.5
arahy.Tifrunner.gnm1.ann1.QNE0FJ Arachis hypogaea HOM05D002181 ORTHO05D003287 2.3e-14 84.3 63 60.3
CDE11G0599 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 1.3e-12 78.6 85 47.1
Manes.17G089020 Manihot esculenta HOM05D005922 ORTHO05D006934 8.1e-12 75.9 79 51.9
SEGI_24854 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 1.2e-10 72.0 226 28.8
Zm00001eb371330 Zea mays HOM05D005922 ORTHO05D006934 1.0e-06 58.9 41 56.1
A02p14700 Brassica napus HOM05D005922 ORTHO05D006934 2.3e-06 57.8 77 42.9
BraA02t06537Z Brassica rapa HOM05D005922 ORTHO05D006934 2.3e-06 57.8 77 42.9


User provided reference genes

Program Settings