Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 2.0e-124 449.1 235 100.0
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 2.0e-124 449.1 235 100.0
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 2.9e-102 375.6 235 80.0
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 2.4e-101 372.5 235 78.7
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 2.7e-100 369.0 235 78.3
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.3e-99 366.7 235 77.4
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.9e-98 362.8 235 77.4
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 4.3e-98 361.7 235 76.6
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 6.2e-97 357.8 257 72.4
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 1.5e-95 353.2 235 74.0
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 4.4e-95 351.7 236 73.7
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 5.8e-95 351.3 235 74.0
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 7.6e-95 350.9 235 72.3
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 4.9e-94 348.2 235 72.3
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 8.4e-94 347.4 235 72.8
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.4e-93 346.7 235 72.8
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 3.2e-93 345.5 235 74.9
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 7.1e-93 344.4 235 71.9
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 1.6e-92 343.2 235 73.2
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 1.6e-92 343.2 235 71.5
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 1.6e-92 343.2 235 71.5
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 2.7e-92 342.4 231 71.9
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 2.7e-92 342.4 231 71.9
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.6e-92 341.7 235 71.9
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 4.6e-92 341.7 235 74.0
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 4.6e-92 341.7 235 71.5
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.0e-91 340.5 235 73.6
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 1.0e-91 340.5 231 72.7
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 2.3e-91 339.3 233 73.8
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 2.3e-91 339.3 235 71.5
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 3.9e-91 338.6 228 73.7
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 5.1e-91 338.2 231 77.1
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 5.1e-91 338.2 229 73.4
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 8.7e-91 337.4 224 73.7
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 1.1e-90 337.0 236 70.3
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 1.9e-90 336.3 230 79.6
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 4.3e-90 335.1 235 74.0
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 5.6e-90 334.7 235 80.0
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 9.6e-90 334.0 231 71.4
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 9.6e-90 334.0 231 72.3
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 9.6e-90 334.0 233 74.7
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 1.6e-89 333.2 230 71.3
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 2.1e-89 332.8 231 71.4
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 2.1e-89 332.8 231 71.4
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 2.1e-89 332.8 229 70.7
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 2.1e-89 332.8 235 72.8
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 3.6e-89 332.0 235 70.6
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 3.6e-89 332.0 233 70.0
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 4.8e-89 331.6 227 79.3
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 4.8e-89 331.6 235 72.8
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 4.8e-89 331.6 235 73.2
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 8.1e-89 330.9 235 72.3
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 1.1e-88 330.5 235 69.4
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 1.4e-88 330.1 235 71.5
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 1.8e-88 329.7 213 77.9
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 4.0e-88 328.6 229 71.6
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 5.3e-88 328.2 243 74.5
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 9.0e-88 327.4 235 75.7
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 9.0e-88 327.4 238 68.5
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.5e-87 326.6 233 68.7
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 1.5e-87 326.6 222 72.5
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 2.0e-87 326.2 231 68.8
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.4e-87 325.5 244 66.8
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 3.4e-87 325.5 235 72.3
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.5e-87 325.1 250 65.6
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 4.5e-87 325.1 230 69.1
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 4.5e-87 325.1 230 70.0
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 5.8e-87 324.7 231 77.1
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 7.6e-87 324.3 235 70.2
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 7.6e-87 324.3 229 71.2
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 9.9e-87 323.9 237 68.8
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 9.9e-87 323.9 240 67.9
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 1.3e-86 323.6 241 68.9
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 1.7e-86 323.2 235 67.7
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.7e-86 323.2 229 70.7
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 2.2e-86 322.8 228 70.2
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 3.8e-86 322.0 224 69.6
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 4.9e-86 321.6 236 67.8
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 8.4e-86 320.9 237 67.9
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 1.1e-85 320.5 237 68.4
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 1.1e-85 320.5 237 68.4
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 1.1e-85 320.5 231 68.4
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.4e-85 320.1 229 69.9
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 1.4e-85 320.1 231 67.5
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 2.4e-85 319.3 231 68.4
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 9.3e-85 317.4 238 73.9
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 1.2e-84 317.0 234 67.1
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 1.2e-84 317.0 237 73.4
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 1.6e-84 316.6 237 69.2
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 3.5e-84 315.5 229 70.3
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 1.3e-83 313.5 226 74.8
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 1.8e-83 313.2 235 64.3
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 2.3e-83 312.8 235 71.9
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 1.5e-82 310.1 232 73.3
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 3.3e-82 308.9 234 64.1
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 4.3e-82 308.5 237 66.7
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 4.3e-82 308.5 228 68.4
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 7.4e-82 307.8 233 66.5
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 2.8e-81 305.8 230 64.3
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 2.8e-81 305.8 226 68.6
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 4.8e-81 305.1 234 62.8
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 1.1e-80 303.9 241 62.7
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 2.4e-80 302.8 228 64.5
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 3.1e-80 302.4 241 62.2
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 3.1e-80 302.4 241 62.2
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 9.0e-80 300.8 224 65.2
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 9.0e-80 300.8 240 62.5
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 9.0e-80 300.8 241 62.2
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 9.0e-80 300.8 237 63.3
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 9.0e-80 300.8 235 63.0
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 9.0e-80 300.8 237 62.4
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 1.5e-79 300.1 239 61.5
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 1.5e-79 300.1 224 65.2
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 2.6e-79 299.3 237 62.9
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 2.6e-79 299.3 233 62.7
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 4.5e-79 298.5 220 63.2
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 4.5e-79 298.5 237 63.3
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 5.8e-79 298.1 224 63.8
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 5.8e-79 298.1 220 65.5
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 1.7e-78 296.6 234 67.1
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 4.9e-78 295.0 260 60.0
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 6.7e-75 284.6 238 60.5
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 4.1e-72 275.4 187 73.3
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 2.0e-71 273.1 181 75.1
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 1.2e-68 263.8 222 69.8
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 1.3e-67 260.4 229 61.1
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.5e-66 256.9 210 63.3
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 1.7e-62 243.4 235 57.9
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 8.5e-62 241.1 160 77.5
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 4.2e-61 238.8 194 66.5
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 7.2e-61 238.0 213 56.8
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 3.0e-59 232.6 211 52.6
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.4e-56 223.8 163 68.7
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 2.2e-54 216.5 191 62.3
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 9.4e-53 211.1 158 66.5
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 1.7e-49 200.3 188 66.5
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 6.5e-46 188.3 213 46.5
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 9.4e-45 184.5 212 46.7
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 2.1e-44 183.3 114 77.2
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 8.0e-44 181.4 214 47.2
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 4.0e-43 179.1 214 46.7
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 2.0e-42 176.8 125 80.8
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 2.6e-42 176.4 145 62.8
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 2.9e-38 162.9 189 51.3
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 7.2e-37 158.3 91 82.4
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 4.1e-32 142.5 217 37.8
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 5.4e-32 142.1 100 68.0
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 3.2e-29 132.9 105 65.7
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 6.1e-28 128.6 99 59.6
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 4.9e-25 119.0 130 50.0
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 1.4e-24 117.5 159 42.1
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 5.4e-24 115.5 233 33.9
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 7.0e-24 115.2 83 69.9
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 1.3e-22 110.9 91 60.4
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 2.9e-22 109.8 68 82.4
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 1.2e-20 104.4 69 72.5
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.1e-20 103.6 61 77.0
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 2.1e-20 103.6 194 29.9
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 6.1e-20 102.1 74 71.6
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 6.1e-20 102.1 76 67.1
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.3e-19 100.1 76 65.8
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 2.0e-15 87.0 63 68.3
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 6.6e-14 82.0 61 67.2
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 1.5e-13 80.9 87 46.0
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 4.7e-12 75.9 53 75.5
Cre03.g193550 Chlamydomonas reinhardtii HOM05D004213 ORTHO05D005091 3.1e-11 73.2 225 27.1
Rhsim07G0218600 Rhododendron simsii HOM05D004213 ORTHO05D339259 3.1e-11 73.2 40 82.5
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 1.9e-08 63.9 53 62.3
RcHm_v2.0_Chr1g0366151 Rosa chinensis HOM05D004213 ORTHO05D005091 4.1e-08 62.8 40 70.0
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 7.0e-08 62.0 55 61.8
PGSC0003DMG401011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 3.5e-07 59.7 54 64.8


User provided reference genes

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