Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049260 Camellia sinensis var. sinensis HOM05D006797 ORTHO05D007696 3.4e-57 224.9 126 100.0
Rhsim13G0134800 Rhododendron simsii HOM05D006797 ORTHO05D007696 1.5e-28 129.8 134 62.7
Cc09_g04790 Coffea canephora HOM05D006797 ORTHO05D007696 1.9e-28 129.4 126 71.4
SGA_v2.0_scaffold60G20810 Striga asiatica HOM05D006797 ORTHO05D007696 1.8e-26 122.9 126 66.7
Manes.03G071800 Manihot esculenta HOM05D006797 ORTHO05D007696 1.5e-25 119.8 123 65.0
Oeu036765.2 Olea europaea HOM05D006797 ORTHO05D007696 1.5e-25 119.8 133 61.7
SGA_v2.0_scaffold44G16576 Striga asiatica HOM05D001006 ORTHO05D000868 1.5e-25 119.8 125 64.0
Ah.15g091850 Amaranthus hybridus HOM05D006797 ORTHO05D007696 5.8e-25 117.9 125 64.8
MSTRG.8842 Avicennia marina HOM05D006797 ORTHO05D007696 5.8e-25 117.9 123 64.2
Migut.F00519 Erythranthe guttata HOM05D006797 ORTHO05D007696 9.9e-25 117.1 123 61.8
Ciclev10017227m.g Citrus clementina HOM05D006797 ORTHO05D007696 1.3e-24 116.7 124 61.3
Phvul.002G187600 Phaseolus vulgaris HOM05D006797 ORTHO05D007696 1.7e-24 116.3 126 63.5
Sc24g0002860 Simmondsia chinensis HOM05D006797 ORTHO05D007696 1.7e-24 116.3 122 60.7
GSVIVG01012170001 Vitis vinifera HOM05D006797 ORTHO05D007696 2.2e-24 115.9 125 61.6
Glyma.05G134500 Glycine max HOM05D006797 ORTHO05D007696 4.9e-24 114.8 126 65.1
Sed0011432 Sechium edule HOM05D006797 ORTHO05D007696 8.4e-24 114.0 126 62.7
Dinv03172 Davidia involucrata HOM05D006797 ORTHO05D007696 1.1e-23 113.6 129 60.5
QL11p011767 Quercus lobata HOM05D006797 ORTHO05D007696 1.4e-23 113.2 125 59.2
EL10Ac7g17249 Beta vulgaris HOM05D006797 ORTHO05D007696 4.2e-23 111.7 123 60.2
CiPaw.10G107100 Carya illinoinensis HOM05D006797 ORTHO05D007696 5.4e-23 111.3 119 63.9
ClCG01G025860 Citrullus lanatus HOM05D006797 ORTHO05D007696 5.4e-23 111.3 126 58.7
Lalb_Chr07g0188191 Lupinus albus HOM05D006797 ORTHO05D007696 5.4e-23 111.3 126 63.5
Dinv02379 Davidia involucrata HOM05D006797 ORTHO05D007696 9.3e-23 110.5 105 62.9
VMungo0251G2933 Vigna mungo HOM05D006797 ORTHO05D007696 9.3e-23 110.5 109 67.0
Glyma.08G089600 Glycine max HOM05D006797 ORTHO05D007696 1.2e-22 110.2 126 63.5
SalBow3G3973 Salvia bowleyana HOM05D006797 ORTHO05D007696 2.1e-22 109.4 123 62.6
Prupe.4G119300 Prunus persica HOM05D006797 ORTHO05D007696 2.7e-22 109.0 123 56.9
Ca_18220_v3 Cicer arietinum L. HOM05D006797 ORTHO05D007696 3.5e-22 108.6 123 62.6
arahy.Tifrunner.gnm1.ann1.30I9D2 Arachis hypogaea HOM05D006797 ORTHO05D007696 4.6e-22 108.2 121 62.8
arahy.Tifrunner.gnm1.ann1.3X9X11 Arachis hypogaea HOM05D006797 ORTHO05D007696 4.6e-22 108.2 121 62.8
Hma1.2p1_1220F.1_g268030 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 6.0e-22 107.8 128 61.7
MELO3C007002.2 Cucumis melo HOM05D006797 ORTHO05D007696 7.8e-22 107.5 126 55.6
Psat7g087040 Pisum sativum HOM05D006797 ORTHO05D007696 7.8e-22 107.5 125 58.4
TAR626G0010 Trochodendron aralioides HOM05D006797 ORTHO05D007696 7.8e-22 107.5 127 63.0
CsaV3_6G053080 Cucumis sativus L. HOM05D006797 ORTHO05D007696 2.3e-21 105.9 126 55.6
Medtr4g094782 Medicago truncatula HOM05D006797 ORTHO05D007696 3.0e-21 105.5 123 60.2
HanXRQChr12g0377351 Helianthus annuus HOM05D006797 ORTHO05D007696 3.9e-21 105.1 123 60.2
Gorai.010G130400 Gossypium raimondii HOM05D006797 ORTHO05D007696 5.1e-21 104.8 128 57.0
Atru.chr10.261 Acer truncatum HOM05D006797 ORTHO05D007696 8.7e-21 104.0 113 61.1
Nitab4.5_0003902g0030 Nicotiana tabacum HOM05D006797 ORTHO05D007696 8.7e-21 104.0 125 60.8
Nitab4.5_0000632g0020 Nicotiana tabacum HOM05D006797 ORTHO05D007696 1.1e-20 103.6 125 60.8
Duzib211G0055 Durio zibethinus HOM05D006797 ORTHO05D007696 1.5e-20 103.2 129 59.7
MD10G1226000 Malus domestica HOM05D006797 ORTHO05D007696 1.5e-20 103.2 123 53.7
PGR042G0784 Punica granatum HOM05D006797 ORTHO05D007696 1.5e-20 103.2 132 56.8
RcHm_v2.0_Chr5g0021541 Rosa chinensis HOM05D006797 ORTHO05D007696 1.5e-20 103.2 123 51.2
Gohir.D06G114100 Gossypium hirsutum HOM05D006797 ORTHO05D007696 1.9e-20 102.8 128 56.2
Lsat_1_v5_gn_3_103300 Lactuca sativa HOM05D006797 ORTHO05D007696 1.9e-20 102.8 112 58.0
Hund23985 Selenicereus undatus HOM05D006797 ORTHO05D007696 1.9e-20 102.8 123 58.5
CDE05G1867 Ceratophyllum demersum HOM05D006797 ORTHO05D007696 2.5e-20 102.4 126 56.3
TPR.G27392 Trifolium pratense HOM05D006797 ORTHO05D007696 3.3e-20 102.1 123 56.9
TWI38G0311 Tripterygium wilfordii HOM05D006797 ORTHO05D007696 7.3e-20 100.9 124 58.1
Gohir.A06G110200 Gossypium hirsutum HOM05D006797 ORTHO05D007696 1.6e-19 99.8 128 55.5
Solyc02g082020.3 Solanum lycopersicum HOM05D006797 ORTHO05D007696 1.6e-19 99.8 125 60.8
Sopen02g026660 Solanum pennellii HOM05D006797 ORTHO05D007696 4.8e-19 98.2 125 60.0
CAN.G809.30 Capsicum annuum HOM05D006797 ORTHO05D007696 6.2e-19 97.8 125 57.6
Cpa.g.sc30.90 Carica papaya HOM05D006797 ORTHO05D007696 1.1e-18 97.1 107 60.7
Lj4g0013366 Lotus japonicus HOM05D006797 ORTHO05D007696 1.8e-18 96.3 107 60.7
PGSC0003DMG400007337 Solanum tuberosum HOM05D006797 ORTHO05D007696 1.8e-18 96.3 125 59.2
Aqoxy3G03581 Aquilegia oxysepala HOM05D006409 ORTHO05D008250 2.4e-18 95.9 126 50.0
PSO541G4265 Papaver somniferum HOM05D006797 ORTHO05D007696 2.4e-18 95.9 126 52.4
Peaxi162Scf00036g02019 Petunia axillaris HOM05D006797 ORTHO05D007696 2.4e-18 95.9 125 58.4
Nn1g05854 Nelumbo nucifera HOM05D006797 ORTHO05D007696 4.0e-18 95.1 125 54.4
PSO675G1942 Papaver somniferum HOM05D006797 ORTHO05D007696 5.3e-18 94.7 126 51.6
ECA248G3234 Erigeron canadensis HOM05D006797 ORTHO05D007696 4.4e-17 91.7 123 52.8
Potri.003G155400 Populus trichocarpa HOM05D006797 ORTHO05D007696 4.4e-17 91.7 126 51.6
CANSAT35G2044 Cannabis sativa HOM05D006797 ORTHO05D007696 2.9e-16 89.0 125 48.8
vmacro03563 Vaccinium macrocarpon HOM05D006797 ORTHO05D007696 1.1e-15 87.0 227 35.7
AUR62042807 Chenopodium quinoa HOM05D006797 ORTHO05D007696 1.4e-15 86.7 123 50.4
HPP92_013198 Vanilla planifolia HOM05D006797 ORTHO05D007696 1.4e-15 86.7 126 51.6
THA.LOC104812696 Tarenaya hassleriana HOM05D006797 ORTHO05D007696 2.4e-15 85.9 141 51.8
Zm00001eb430680 Zea mays HOM05D006797 ORTHO05D007696 7.1e-15 84.3 127 56.7
Zm00001eb442340 Zea mays HOM05D006797 ORTHO05D007696 7.1e-15 84.3 100 61.0
FAN16G2513 Fragaria x ananassa HOM05D006797 ORTHO05D007696 2.7e-14 82.4 124 50.0
Zm00001eb071100 Zea mays HOM05D006797 ORTHO05D007696 4.6e-14 81.6 127 55.9
COL.COLO4_25039 Corchorus olitorius HOM05D006797 ORTHO05D007696 1.0e-13 80.5 104 55.8
Thecc.02G002300 Theobroma cacao HOM05D006797 ORTHO05D007696 6.6e-13 77.8 68 66.2
FAN21G4013 Fragaria x ananassa HOM05D006797 ORTHO05D007696 8.7e-13 77.4 124 47.6
FAN25G1182 Fragaria x ananassa HOM05D006797 ORTHO05D007696 1.1e-12 77.0 124 47.6
Os04g0611300 Oryza sativa ssp. japonica HOM05D006797 ORTHO05D007696 1.5e-12 76.6 127 51.2
BcaB04g18200 Brassica carinata HOM05D006797 ORTHO05D007696 2.5e-12 75.9 124 54.0
Haze_24216 Corylus avellana HOM05D006797 ORTHO05D007696 2.5e-12 75.9 135 48.1
FvH4_3g13200 Fragaria vesca HOM05D006797 ORTHO05D007696 4.3e-12 75.1 124 46.8
FAN11G3985 Fragaria x ananassa HOM05D006797 ORTHO05D007696 4.3e-12 75.1 124 46.8
unitig_37.g11921 Utricularia gibba HOM05D006797 ORTHO05D007696 5.6e-12 74.7 70 67.1
Aa31LG6G12300 Aethionema arabicum HOM05D006797 ORTHO05D007696 9.6e-12 73.9 122 52.5
ATR0763G022 Amborella trichopoda HOM05D006797 ORTHO05D007696 9.6e-12 73.9 112 51.8
BcaC07g37796 Brassica carinata HOM05D006797 ORTHO05D007696 9.6e-12 73.9 121 53.7
A08p10910 Brassica napus HOM05D006797 ORTHO05D007696 9.6e-12 73.9 121 53.7
Thhalv10009126m.g Eutrema salsugineum HOM05D006797 ORTHO05D007696 9.6e-12 73.9 122 52.5
BraA08t33088Z Brassica rapa HOM05D006797 ORTHO05D007696 1.6e-11 73.2 124 54.0
AL1G45170 Arabidopsis lyrata HOM05D006797 ORTHO05D007696 2.8e-11 72.4 127 52.0
DCAR_001265 Daucus carota HOM05D006797 ORTHO05D007696 3.6e-11 72.0 102 52.9
MBI18_g20922_MAGBIO Magnolia biondii HOM05D006797 ORTHO05D007696 4.8e-11 71.6 105 50.5
Hma1.2p1_0747F.1_g212490 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 6.2e-11 71.2 69 65.2
BolC8t48187H Brassica oleracea HOM05D006797 ORTHO05D007696 8.1e-11 70.9 121 51.2
A09p35270 Brassica napus HOM05D006797 ORTHO05D007696 1.8e-10 69.7 121 49.6
AT1G30880 Arabidopsis thaliana HOM05D006797 ORTHO05D007696 2.4e-10 69.3 126 50.0
Haze_05201 Corylus avellana HOM05D000001 ORTHO05D010268 2.4e-10 69.3 48 79.2
Haze_15747 Corylus avellana HOM05D006797 ORTHO05D007696 2.4e-10 69.3 48 79.2
BcaC05g27127 Brassica carinata HOM05D006797 ORTHO05D007696 4.0e-10 68.6 122 51.6
C05p30120 Brassica napus HOM05D006797 ORTHO05D007696 4.0e-10 68.6 122 51.6
BraA09t39054Z Brassica rapa HOM05D006797 ORTHO05D007696 5.3e-10 68.2 122 51.6
A07p09570 Brassica napus HOM05D006797 ORTHO05D007696 6.9e-10 67.8 121 50.4
BolC7t41975H Brassica oleracea HOM05D006797 ORTHO05D007696 6.9e-10 67.8 122 50.0
BraA07t28751Z Brassica rapa HOM05D006797 ORTHO05D007696 6.9e-10 67.8 121 50.4
Sp1g26780 Schrenkiella parvula HOM05D006797 ORTHO05D007696 6.9e-10 67.8 126 50.8
Carub.0001s2922 Capsella rubella HOM05D006797 ORTHO05D007696 9.0e-10 67.4 126 50.0
BcaB07g32754 Brassica carinata HOM05D006797 ORTHO05D007696 1.5e-09 66.6 125 49.6
C07p14730 Brassica napus HOM05D006797 ORTHO05D007696 1.5e-09 66.6 122 49.2
Sabra03G0112800 Salix brachista HOM05D006797 ORTHO05D007696 4.5e-09 65.1 58 65.5
CARHR030370 Cardamine hirsuta HOM05D006797 ORTHO05D007696 5.8e-09 64.7 128 47.7
BolC5t31749H Brassica oleracea HOM05D006797 ORTHO05D007696 1.4e-07 60.1 128 47.7
SMO167G0044 Selaginella moellendorffii HOM05D006797 ORTHO05D007696 1.9e-07 59.7 122 40.2
Oeu008734.1 Olea europaea HOM05D016541 ORTHO05D007696 1.2e-06 57.0 68 61.8
Mapoly0051s0054 Marchantia polymorpha HOM05D006797 ORTHO05D007696 4.6e-06 55.1 124 42.7


User provided reference genes

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