Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 9.9e-72 274.2 258 100.0
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 1.3e-42 177.6 258 74.4
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 1.6e-42 177.2 255 76.1
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 1.5e-40 170.6 258 75.2
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 5.9e-40 168.7 258 75.2
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 5.0e-39 165.6 259 73.0
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 1.9e-38 163.7 256 74.2
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 1.9e-38 163.7 259 74.5
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 1.6e-37 160.6 256 72.3
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 2.1e-37 160.2 256 72.7
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 2.7e-37 159.8 258 72.9
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 3.6e-37 159.5 256 72.7
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 4.6e-37 159.1 260 73.1
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 4.6e-37 159.1 121 71.1
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 6.1e-37 158.7 256 71.1
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 1.0e-36 157.9 259 72.2
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 3.0e-36 156.4 258 75.6
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 1.1e-35 154.5 263 69.2
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 2.0e-35 153.7 258 71.3
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 5.7e-35 152.1 256 77.0
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 5.7e-35 152.1 258 70.2
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 7.4e-35 151.8 258 71.3
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 9.7e-35 151.4 256 71.1
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 9.7e-35 151.4 256 72.3
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 1.3e-34 151.0 247 72.5
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 1.7e-34 150.6 256 71.9
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 3.7e-34 149.4 258 70.5
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 6.3e-34 148.7 256 72.7
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 6.3e-34 148.7 256 72.7
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 1.4e-33 147.5 258 71.7
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 1.8e-33 147.1 257 73.9
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 2.4e-33 146.7 253 72.3
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 4.1e-33 146.0 258 70.5
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 4.1e-33 146.0 258 70.5
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 6.9e-33 145.2 258 70.5
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 9.1e-33 144.8 258 70.2
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.2e-32 144.4 256 71.5
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 1.2e-32 144.4 258 70.9
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 1.5e-32 144.1 259 69.9
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 2.6e-32 143.3 258 66.3
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 3.4e-32 142.9 258 69.0
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 4.5e-32 142.5 185 88.6
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 4.5e-32 142.5 185 90.3
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 4.5e-32 142.5 256 70.3
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 4.5e-32 142.5 256 71.5
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 1.3e-31 141.0 256 72.7
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.3e-31 141.0 256 71.1
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 2.9e-31 139.8 258 67.4
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 8.5e-31 138.3 258 67.8
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 8.5e-31 138.3 259 66.4
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 8.5e-31 138.3 258 67.4
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 1.1e-30 137.9 255 68.2
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 3.2e-30 136.3 258 67.8
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 4.2e-30 136.0 257 69.6
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 4.2e-30 136.0 259 66.4
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 4.2e-30 136.0 258 69.0
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 5.5e-30 135.6 258 70.2
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 9.4e-30 134.8 258 70.9
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 9.4e-30 134.8 242 71.9
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 1.2e-29 134.4 256 70.7
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 1.6e-29 134.0 256 68.0
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 2.1e-29 133.7 256 70.7
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 2.1e-29 133.7 256 70.3
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 2.7e-29 133.3 262 68.3
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 3.6e-29 132.9 106 73.6
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 4.7e-29 132.5 258 71.3
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 4.7e-29 132.5 258 68.2
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 7.9e-29 131.7 257 68.9
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 1.8e-28 130.6 255 69.4
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 2.3e-28 130.2 256 70.7
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 2.3e-28 130.2 256 68.8
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 3.9e-28 129.4 245 71.0
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 3.9e-28 129.4 258 65.9
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 3.9e-28 129.4 256 67.6
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 3.9e-28 129.4 258 66.3
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 5.1e-28 129.0 258 67.1
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 6.7e-28 128.6 258 67.1
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 6.7e-28 128.6 258 66.3
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 6.7e-28 128.6 257 69.3
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 6.7e-28 128.6 259 66.8
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 6.7e-28 128.6 259 65.3
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 8.8e-28 128.3 256 67.6
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 1.1e-27 127.9 258 69.0
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 3.3e-27 126.3 256 68.8
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 7.4e-27 125.2 256 67.6
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 7.4e-27 125.2 256 67.6
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 7.4e-27 125.2 256 67.6
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 7.4e-27 125.2 258 68.2
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 7.4e-27 125.2 185 85.4
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 9.7e-27 124.8 257 68.9
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 1.3e-26 124.4 260 66.9
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 1.3e-26 124.4 257 70.0
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 2.8e-26 123.2 256 68.8
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 2.8e-26 123.2 258 66.7
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 3.7e-26 122.9 256 69.1
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 4.8e-26 122.5 256 72.3
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 4.8e-26 122.5 258 70.9
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 8.2e-26 121.7 256 68.0
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 8.2e-26 121.7 258 68.2
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 1.4e-25 120.9 258 65.5
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 1.8e-25 120.6 256 66.8
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 1.8e-25 120.6 256 66.8
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.4e-25 120.2 258 66.3
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 3.1e-25 119.8 258 67.1
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 3.1e-25 119.8 256 68.0
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 4.1e-25 119.4 256 70.3
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 9.1e-25 118.2 254 70.9
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 1.2e-24 117.9 258 63.2
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 1.2e-24 117.9 244 68.4
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 1.7e-23 114.0 249 67.1
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 2.2e-23 113.6 256 65.6
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 3.8e-23 112.8 112 55.4
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 5.0e-23 112.5 118 54.2
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 6.5e-23 112.1 246 70.3
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.1e-22 111.3 186 83.3
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 1.1e-22 111.3 185 82.7
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 1.9e-22 110.5 257 63.8
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.9e-22 110.5 231 68.8
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 1.9e-22 110.5 255 70.6
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 3.2e-22 109.8 259 68.3
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 2.7e-21 106.7 256 65.2
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 4.7e-21 105.9 256 64.8
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 6.1e-21 105.5 256 64.8
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 6.1e-21 105.5 256 64.8
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 6.1e-21 105.5 260 61.5
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 1.0e-20 104.8 254 69.7
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 2.3e-20 103.6 259 60.2
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 2.3e-20 103.6 259 64.1
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 5.2e-20 102.4 232 67.7
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 8.8e-20 101.7 247 65.6
unitig_8.g4592 Utricularia gibba HOM05D004193 ORTHO05D004862 8.8e-20 101.7 122 47.5
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 1.1e-19 101.3 135 46.7
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 3.3e-19 99.8 111 49.5
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 5.7e-19 99.0 244 63.1
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 5.7e-19 99.0 243 65.0
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 9.7e-19 98.2 243 63.4
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 9.7e-19 98.2 243 63.4
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 4.8e-18 95.9 256 60.5
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 8.2e-18 95.1 244 62.7
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 8.2e-18 95.1 256 63.7
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 1.1e-17 94.7 255 60.8
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 1.6e-16 90.9 229 67.7
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 5.9e-16 89.0 185 75.7
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 1.0e-15 88.2 264 60.6
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 2.5e-14 83.6 266 60.2
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 5.5e-14 82.4 255 65.5
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 5.5e-14 82.4 255 65.5
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 9.4e-14 81.6 254 60.2
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 1.2e-13 81.3 254 60.2
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 2.1e-13 80.5 255 65.1
Cfa015344 Carpinus fangiana HOM05D001136 ORTHO05D001144 4.0e-12 76.3 50 72.0
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 5.2e-12 75.9 264 59.5
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 5.2e-12 75.9 51 62.7
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 1.2e-11 74.7 101 42.6
Cfa019730 Carpinus fangiana HOM05D004193 ORTHO05D004862 9.8e-11 71.6 50 68.0
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 1.3e-10 71.2 259 51.7
ATR0705G001 Amborella trichopoda HOM05D004193 ORTHO05D004862 1.6e-08 64.3 119 36.1
HanXRQChr09g0245841 Helianthus annuus HOM05D004193 ORTHO05D004862 4.5e-08 62.8 48 60.4
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 7.7e-08 62.0 51 58.8
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 7.7e-08 62.0 51 58.8
HanXRQChr09g0243731 Helianthus annuus HOM05D004193 ORTHO05D004862 1.0e-07 61.6 48 58.3
AL2G35820 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 5.0e-07 59.3 46 63.0
AL6G39660 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 5.0e-07 59.3 46 63.0
HanXRQChr04g0116951 Helianthus annuus HOM05D004193 ORTHO05D004862 4.2e-06 56.2 152 81.6
Ah.02g117850 Amaranthus hybridus HOM05D004193 ORTHO05D004862 9.4e-06 55.1 43 65.1


User provided reference genes

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