Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 1.1e-298 1029.2 523 100.0
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 9.2e-234 813.5 522 80.7
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 2.1e-225 785.8 508 79.7
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 7.8e-225 783.9 564 74.6
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 2.8e-222 775.4 521 77.7
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 9.9e-220 766.9 529 75.8
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 2.6e-212 742.3 526 73.4
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.9e-211 738.8 521 74.5
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.4e-210 735.7 521 74.5
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 2.4e-210 735.7 521 74.5
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 9.3e-210 733.8 531 73.6
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 1.0e-208 730.3 523 72.7
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 1.7e-208 729.6 521 73.1
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 2.3e-208 729.2 519 75.0
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 8.7e-208 727.2 519 72.6
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 1.1e-207 726.9 543 71.6
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 9.6e-207 723.8 520 73.7
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 6.2e-206 721.1 532 70.7
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 2.0e-204 716.1 526 72.1
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 4.5e-204 714.9 520 72.3
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 4.5e-204 714.9 520 72.3
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 5.8e-204 714.5 520 72.3
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.2e-203 712.6 520 72.3
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 4.9e-203 711.4 535 71.6
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.1e-202 710.3 508 72.6
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 4.2e-202 708.4 525 70.9
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 4.2e-202 708.4 508 72.8
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 5.4e-202 708.0 508 72.6
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 5.4e-202 708.0 526 71.7
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 9.3e-202 707.2 504 72.4
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 1.8e-200 703.0 524 70.6
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 3.9e-200 701.8 521 71.2
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 3.9e-200 701.8 527 71.3
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 8.7e-200 700.7 527 71.2
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 3.7e-198 695.3 520 70.0
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 8.1e-198 694.1 527 70.0
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 8.4e-195 684.1 527 70.2
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 5.5e-194 681.4 545 67.9
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 7.1e-194 681.0 525 67.2
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 9.3e-194 680.6 550 66.7
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 2.1e-193 679.5 544 67.8
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 4.6e-193 678.3 521 69.3
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 7.9e-193 677.6 527 69.3
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 9.6e-191 670.6 523 66.7
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 1.2e-188 663.7 523 67.1
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.7e-187 659.8 527 67.0
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 4.9e-187 658.3 519 68.8
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 2.1e-185 652.9 524 65.8
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 7.9e-185 651.0 524 67.4
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 7.9e-185 651.0 519 67.2
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 7.9e-185 651.0 508 68.3
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 2.3e-184 649.4 518 68.3
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 1.5e-183 646.7 521 66.2
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 1.4e-181 640.2 525 65.9
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 3.1e-181 639.0 520 66.9
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 4.1e-181 638.6 528 65.0
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 1.2e-180 637.1 524 65.5
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 1.0e-179 634.0 563 62.2
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 1.3e-179 633.6 503 67.4
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 5.0e-179 631.7 518 64.9
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 8.5e-179 630.9 516 65.1
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 9.7e-175 617.5 427 75.2
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 1.7e-174 616.7 530 64.5
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 4.8e-174 615.1 494 67.8
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 1.4e-173 613.6 521 64.9
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 4.2e-170 602.1 518 63.7
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 3.0e-168 595.9 517 63.1
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 6.1e-161 571.6 550 60.0
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 5.2e-160 568.5 527 60.5
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 1.5e-159 567.0 519 62.2
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 5.9e-156 555.1 409 71.1
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 3.2e-154 549.3 401 71.8
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 5.5e-154 548.5 500 60.6
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 1.4e-152 543.9 500 59.8
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 1.1e-146 524.2 445 62.5
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.5e-146 523.9 345 78.0
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 1.5e-130 470.7 493 50.9
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 1.6e-129 467.2 355 67.9
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 2.1e-129 466.8 337 73.9
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 9.2e-125 451.4 425 57.9
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 1.1e-122 444.5 507 52.7
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 3.2e-117 426.4 387 60.2
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 4.1e-109 399.4 500 49.8
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 2.1e-92 344.0 394 53.8
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 8.7e-91 338.6 428 46.5
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 5.3e-88 329.3 271 67.5
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 5.1e-75 286.2 458 38.6
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 2.5e-74 283.9 463 38.9
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 3.3e-74 283.5 203 71.4
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.6e-73 281.2 497 38.0
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.4e-72 277.3 433 41.1
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 5.3e-72 276.2 478 37.4
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 6.9e-72 275.8 445 40.2
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 4.5e-71 273.1 463 38.4
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 5.8e-71 272.7 501 38.7
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 6.5e-70 269.2 434 39.9
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 6.5e-70 269.2 463 38.0
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 1.1e-69 268.5 463 37.4
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 4.2e-69 266.5 419 41.5
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 5.5e-69 266.2 523 38.4
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 5.5e-69 266.2 459 38.3
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 7.1e-69 265.8 452 38.5
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 6.7e-67 259.2 423 41.1
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.1e-66 258.5 465 37.8
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.5e-66 258.1 518 36.7
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 4.3e-66 256.5 464 37.3
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 7.4e-66 255.8 440 38.9
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.2e-65 254.2 444 39.2
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 3.1e-64 250.4 458 38.4
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 3.1e-64 250.4 464 38.1
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 5.3e-64 249.6 453 38.6
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.3e-62 245.0 466 36.7
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 1.3e-62 245.0 463 38.2
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 1.4e-61 241.5 436 37.8
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 1.4e-61 241.5 436 37.4
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 3.2e-61 240.4 436 37.8
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 1.2e-60 238.4 436 37.2
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 1.2e-60 238.4 436 37.2
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 2.7e-60 237.3 372 42.5
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 7.9e-60 235.7 442 37.6
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 7.9e-60 235.7 452 35.4
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 3.0e-59 233.8 421 37.5
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 1.5e-58 231.5 403 37.5
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 3.3e-58 230.3 169 69.2
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 4.3e-58 229.9 492 36.4
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 1.0e-54 218.8 374 36.4
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 6.5e-54 216.1 439 34.2
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 9.4e-53 212.2 391 37.3
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 5.1e-51 206.5 393 38.2
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 5.1e-51 206.5 383 35.2
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 1.1e-48 198.7 401 35.2
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.4e-45 188.3 411 35.0
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 1.9e-45 188.0 150 58.7
Nitab4.5_0024519g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 9.1e-40 169.1 221 48.0
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 6.5e-38 162.9 415 32.8
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.1e-37 162.2 292 36.3
Lj2A1170T18 Lonicera japonica HOM05D003798 ORTHO05D004652 1.1e-37 162.2 189 55.0
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.9e-37 161.4 265 39.6
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 2.6e-34 151.0 108 62.0
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 9.1e-32 142.5 238 37.0
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 9.1e-32 142.5 92 76.1
Actinidia24901 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.2e-31 142.1 262 40.8
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 3.6e-28 130.6 278 36.7
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 2.0e-26 124.8 168 47.6
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 2.8e-25 120.9 158 43.7
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 8.3e-25 119.4 202 37.1
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.8e-24 118.2 109 61.5
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 3.1e-24 117.5 228 35.5
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 7.7e-23 112.8 159 47.2
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 1.1e-21 109.0 143 44.1
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.8e-19 101.7 158 41.8
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 5.7e-18 96.7 145 43.4
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.3e-17 95.5 140 35.7
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.8e-17 94.4 74 64.9
HanXRQChr10g0281951 Helianthus annuus HOM05D003798 ORTHO05D006066 6.3e-17 93.2 65 63.1
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 1.1e-16 92.4 60 71.7
Rhsim02G0147100 Rhododendron simsii HOM05D003798 ORTHO05D004652 2.4e-16 91.3 80 62.5
Aqoxy1G03386 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 3.2e-16 90.9 87 58.6
Lsat_1_v5_gn_4_80681 Lactuca sativa HOM05D003798 ORTHO05D004652 7.0e-16 89.7 59 69.5
Hma1.2p1_1168F.1_g263140 Hydrangea macrophylla HOM05D003798 ORTHO05D004652 2.7e-15 87.8 56 78.6
Lsat_1_v5_gn_1_5801 Lactuca sativa HOM05D003798 ORTHO05D004652 5.9e-15 86.7 99 55.6
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.5e-13 82.0 150 33.3
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 1.5e-13 82.0 297 27.6
Actinidia24900 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.9e-13 81.6 83 57.8
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 5.6e-13 80.1 104 39.4
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 2.1e-12 78.2 104 50.0
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 4.7e-12 77.0 176 35.8
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 6.1e-12 76.6 115 37.4
Actinidia00760 Actinidia chinensis HOM05D003798 ORTHO05D004652 6.8e-11 73.2 41 85.4
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 1.2e-10 72.4 131 35.1
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 2.0e-10 71.6 81 46.9
AL1G36770 Arabidopsis lyrata HOM05D003496 ORTHO05D023659 3.4e-10 70.9 217 24.0
arahy.Tifrunner.gnm1.ann1.FYU6J1 Arachis hypogaea HOM05D000331 ORTHO05D021523 5.8e-10 70.1 88 45.5
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 1.7e-09 68.6 73 57.5
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 2.2e-09 68.2 212 29.2
arahy.Tifrunner.gnm1.ann1.E8A0WP Arachis hypogaea HOM05D003798 ORTHO05D021523 6.4e-09 66.6 60 53.3
Ca_10811_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 8.3e-09 66.2 76 53.9
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 5.4e-08 63.5 171 31.6


User provided reference genes

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