Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049209 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 1.6e-67 259.2 124 100.0
CSS0009455 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 1.1e-47 193.4 107 86.0
CSS0014125 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 1.1e-47 193.4 107 86.0
Actinidia28776 Actinidia chinensis HOM05D005252 ORTHO05D006788 8.2e-40 167.2 107 75.7
Rhsim08G0021900 Rhododendron simsii HOM05D005252 ORTHO05D006788 1.4e-36 156.4 106 71.7
Hma1.2p1_0158F.1_g069575 Hydrangea macrophylla HOM05D005252 ORTHO05D006788 1.2e-35 153.3 111 64.9
Hma1.2p1_0158F.1_g069580 Hydrangea macrophylla HOM05D005252 ORTHO05D006788 1.2e-35 153.3 111 64.9
Dinv19082 Davidia involucrata HOM05D000783 ORTHO05D000705 6.1e-35 151.0 106 67.9
Eucgr.F02912 Eucalyptus grandis HOM05D005252 ORTHO05D006788 6.1e-35 151.0 116 63.8
Prupe.3G014000 Prunus persica HOM05D005252 ORTHO05D006788 3.0e-34 148.7 100 71.0
Haze_14323 Corylus avellana HOM05D005252 ORTHO05D006788 5.1e-34 147.9 106 67.9
Cfa007750 Carpinus fangiana HOM05D005252 ORTHO05D006788 8.8e-34 147.1 106 67.9
Nitab4.5_0011448g0010 Nicotiana tabacum HOM05D005252 ORTHO05D006788 8.8e-34 147.1 109 64.2
CSS0013830 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 3.3e-33 145.2 86 81.4
Lj2C511T2 Lonicera japonica HOM05D005252 ORTHO05D006788 7.4e-33 144.1 101 68.3
Ciclev10011537m.g Citrus clementina HOM05D005252 ORTHO05D006788 9.7e-33 143.7 125 60.0
Duzib133G0566 Durio zibethinus HOM05D005252 ORTHO05D006788 9.7e-33 143.7 104 66.3
TAR622G0726 Trochodendron aralioides HOM05D005252 ORTHO05D006788 9.7e-33 143.7 106 65.1
Nn5g27060 Nelumbo nucifera HOM05D005252 ORTHO05D006788 1.3e-32 143.3 106 65.1
Nitab4.5_0000483g0240 Nicotiana tabacum HOM05D005252 ORTHO05D006788 1.3e-32 143.3 108 63.9
CAN.G1681.16 Capsicum annuum HOM05D005252 ORTHO05D006788 1.7e-32 142.9 116 59.5
GSVIVG01035253001 Vitis vinifera HOM05D005252 ORTHO05D006788 1.7e-32 142.9 106 63.2
CANSAT56G0277 Cannabis sativa HOM05D005252 ORTHO05D006788 2.8e-32 142.1 99 70.7
MD17G1287300 Malus domestica HOM05D005252 ORTHO05D006788 4.8e-32 141.4 105 65.7
AUR62037491 Chenopodium quinoa HOM05D005252 ORTHO05D006788 1.1e-31 140.2 105 62.9
Nitab4.5_0009456g0010 Nicotiana tabacum HOM05D005252 ORTHO05D006788 1.1e-31 140.2 116 61.2
Aqoxy3G04163 Aquilegia oxysepala HOM05D005252 ORTHO05D006788 1.4e-31 139.8 111 58.6
COL.COLO4_20051 Corchorus olitorius HOM05D005252 ORTHO05D006788 1.4e-31 139.8 104 66.3
Peaxi162Scf00713g00214 Petunia axillaris HOM05D005252 ORTHO05D006788 1.4e-31 139.8 116 61.2
AUR62004761 Chenopodium quinoa HOM05D005252 ORTHO05D006788 2.4e-31 139.0 105 63.8
CiPaw.04G049400 Carya illinoinensis HOM05D005252 ORTHO05D006788 4.1e-31 138.3 106 64.2
Cc07_g12720 Coffea canephora HOM05D005252 ORTHO05D006788 5.3e-31 137.9 104 64.4
Cpa.g.sc178.38 Carica papaya HOM05D005252 ORTHO05D006788 7.0e-31 137.5 106 62.3
PSO063G5026 Papaver somniferum HOM05D005252 ORTHO05D006788 7.0e-31 137.5 105 60.0
PSO782G3987 Papaver somniferum HOM05D005252 ORTHO05D006788 7.0e-31 137.5 105 60.0
PGR004G2027 Punica granatum HOM05D005252 ORTHO05D006788 9.1e-31 137.1 110 62.7
TWI74G0077 Tripterygium wilfordii HOM05D005252 ORTHO05D006788 1.2e-30 136.7 100 65.0
Sabra04G0054100 Salix brachista HOM05D005252 ORTHO05D006788 1.6e-30 136.3 100 66.0
Gohir.A12G052400 Gossypium hirsutum HOM05D005252 ORTHO05D006788 2.0e-30 136.0 99 65.7
MBI06_g19632_MAGBIO Magnolia biondii HOM05D005252 ORTHO05D006788 2.0e-30 136.0 106 60.4
Potri.004G081400 Populus trichocarpa HOM05D005252 ORTHO05D006788 2.0e-30 136.0 100 66.0
RcHm_v2.0_Chr3g0488621 Rosa chinensis HOM05D005252 ORTHO05D006788 2.0e-30 136.0 100 64.0
FvH4_1g27420 Fragaria vesca HOM05D005252 ORTHO05D006788 2.6e-30 135.6 99 65.7
FAN19G2162 Fragaria x ananassa HOM05D005252 ORTHO05D006788 2.6e-30 135.6 99 65.7
LjContig00141g0010829 Lotus japonicus HOM05D005252 ORTHO05D006788 2.6e-30 135.6 106 60.4
Lalb_Chr04g0251511 Lupinus albus HOM05D005252 ORTHO05D006788 3.5e-30 135.2 121 55.4
Gorai.008G054300 Gossypium raimondii HOM05D005252 ORTHO05D006788 5.9e-30 134.4 99 64.6
Ca_05755_v3 Cicer arietinum L. HOM05D005252 ORTHO05D006788 7.7e-30 134.0 106 60.4
DCAR_003403 Daucus carota HOM05D005252 ORTHO05D006788 1.0e-29 133.7 98 64.3
FAN28G2525 Fragaria x ananassa HOM05D005252 ORTHO05D006788 1.0e-29 133.7 99 63.6
FAN28G2815 Fragaria x ananassa HOM05D005252 ORTHO05D006788 1.0e-29 133.7 99 63.6
Atru.chr1.2124 Acer truncatum HOM05D005252 ORTHO05D006788 1.3e-29 133.3 106 60.4
Gohir.D12G051000 Gossypium hirsutum HOM05D005252 ORTHO05D006788 1.7e-29 132.9 99 63.6
Ah.06g191550 Amaranthus hybridus HOM05D005252 ORTHO05D006788 2.9e-29 132.1 100 62.0
Nitab4.5_0008137g0010 Nicotiana tabacum HOM05D005252 ORTHO05D006788 2.9e-29 132.1 117 58.1
QL02p064187 Quercus lobata HOM05D005252 ORTHO05D006788 2.9e-29 132.1 110 59.1
arahy.Tifrunner.gnm1.ann1.UX6KKC Arachis hypogaea HOM05D005252 ORTHO05D006788 3.8e-29 131.7 112 58.9
arahy.Tifrunner.gnm1.ann1.Y82BEI Arachis hypogaea HOM05D005252 ORTHO05D006788 3.8e-29 131.7 112 58.9
Solyc02g081320.4 Solanum lycopersicum HOM05D005252 ORTHO05D006788 3.8e-29 131.7 105 61.9
Sopen02g025950 Solanum pennellii HOM05D005252 ORTHO05D006788 3.8e-29 131.7 105 61.9
PGSC0003DMG400016732 Solanum tuberosum HOM05D005252 ORTHO05D006788 5.0e-29 131.3 105 61.0
CARHR195970 Cardamine hirsuta HOM05D005252 ORTHO05D006788 6.5e-29 131.0 109 57.8
Medtr5g076640 Medicago truncatula HOM05D005252 ORTHO05D006788 6.5e-29 131.0 106 58.5
TPR.G5289 Trifolium pratense HOM05D005252 ORTHO05D006788 8.5e-29 130.6 106 56.6
AT5G17240 Arabidopsis thaliana HOM05D005252 ORTHO05D006788 1.1e-28 130.2 107 57.9
arahy.Tifrunner.gnm1.ann1.2Q625H Arachis hypogaea HOM05D005252 ORTHO05D006788 1.1e-28 130.2 112 58.0
AL6G28290 Arabidopsis lyrata HOM05D005252 ORTHO05D006788 1.5e-28 129.8 109 56.9
Sp6g26990 Schrenkiella parvula HOM05D005252 ORTHO05D006788 1.9e-28 129.4 107 57.0
Sc20g0000830 Simmondsia chinensis HOM05D005252 ORTHO05D006788 1.9e-28 129.4 106 58.5
SGA_v2.0_scaffold115G32046 Striga asiatica HOM05D005252 ORTHO05D006788 1.9e-28 129.4 98 58.2
A02p04080 Brassica napus HOM05D005252 ORTHO05D006788 2.5e-28 129.0 105 58.1
Thhalv10015946m.g Eutrema salsugineum HOM05D005252 ORTHO05D006788 3.2e-28 128.6 107 57.9
Aa31LG11G12430 Aethionema arabicum HOM05D005252 ORTHO05D006788 4.2e-28 128.3 105 57.1
Carub.0006s1543 Capsella rubella HOM05D005252 ORTHO05D006788 4.2e-28 128.3 109 56.9
Glyma.14G209800 Glycine max HOM05D005252 ORTHO05D006788 4.2e-28 128.3 106 56.6
Manes.01G124000 Manihot esculenta HOM05D005252 ORTHO05D006788 4.2e-28 128.3 96 63.5
EL10Ac4g08917 Beta vulgaris HOM05D005252 ORTHO05D006788 5.5e-28 127.9 100 60.0
BcaNung00410 Brassica carinata HOM05D005252 ORTHO05D006788 5.5e-28 127.9 107 57.0
BraA02t05370Z Brassica rapa HOM05D005252 ORTHO05D006788 7.2e-28 127.5 107 56.1
THA.LOC104820865 Tarenaya hassleriana HOM05D005252 ORTHO05D006788 7.2e-28 127.5 105 58.1
Psat2g042800 Pisum sativum HOM05D005252 ORTHO05D006788 1.6e-27 126.3 106 54.7
HPP92_025609 Vanilla planifolia HOM05D005252 ORTHO05D006788 1.6e-27 126.3 97 58.8
Phvul.008G241400 Phaseolus vulgaris HOM05D005252 ORTHO05D006788 2.1e-27 125.9 106 54.7
ATR0807G108 Amborella trichopoda HOM05D005252 ORTHO05D006788 2.7e-27 125.6 125 53.6
CsaV3_3G021090 Cucumis sativus L. HOM05D005252 ORTHO05D006788 3.6e-27 125.2 107 57.0
VMungo0647G0073 Vigna mungo HOM05D005252 ORTHO05D006788 3.6e-27 125.2 100 56.0
ECA238G3559 Erigeron canadensis HOM05D005252 ORTHO05D006788 8.0e-27 124.0 105 54.3
BcaC03g18544 Brassica carinata HOM05D005252 ORTHO05D006788 1.0e-26 123.6 99 57.6
Oeu060821.2 Olea europaea HOM05D005252 ORTHO05D006788 1.0e-26 123.6 102 56.9
BolC2t06801H Brassica oleracea HOM05D005252 ORTHO05D006788 1.4e-26 123.2 99 57.6
Sed0007469 Sechium edule HOM05D005252 ORTHO05D006788 1.4e-26 123.2 118 50.8
Zm00001eb320090 Zea mays HOM05D005252 ORTHO05D006788 2.3e-26 122.5 98 59.2
Lsat_1_v5_gn_2_71861 Lactuca sativa HOM05D005252 ORTHO05D006788 8.8e-26 120.6 105 52.4
SHI24494 Sapria himalayana HOM05D005252 ORTHO05D006788 1.5e-25 119.8 97 58.8
C02p08920 Brassica napus HOM05D005252 ORTHO05D006788 3.3e-25 118.6 100 57.0
Os07g0471100 Oryza sativa ssp. japonica HOM05D005252 ORTHO05D006788 4.4e-25 118.2 105 52.4
HanXRQChr14g0443361 Helianthus annuus HOM05D005252 ORTHO05D006788 7.5e-25 117.5 105 50.5
SEGI_32636 Sequoiadendron giganteum HOM05D005252 ORTHO05D006788 4.8e-24 114.8 98 55.1
SalBow5G4252 Salvia bowleyana HOM05D005252 ORTHO05D006788 8.2e-24 114.0 112 46.4
Thecc.04G057900 Theobroma cacao HOM05D005252 ORTHO05D006788 1.1e-23 113.6 77 71.4
ClCG05G011370 Citrullus lanatus HOM05D005252 ORTHO05D006788 2.4e-23 112.5 100 57.0
DCAR_003402 Daucus carota HOM05D005252 ORTHO05D006788 1.2e-22 110.2 79 65.8
SalBow5G4267 Salvia bowleyana HOM05D005252 ORTHO05D006788 1.6e-22 109.8 98 51.0
CDE04G0131 Ceratophyllum demersum HOM05D005252 ORTHO05D006788 2.9e-21 105.5 88 59.1
FAN23G1936 Fragaria x ananassa HOM05D005252 ORTHO05D006788 2.1e-19 99.4 122 50.0
SMO244G0074 Selaginella moellendorffii HOM05D005252 ORTHO05D006788 1.0e-18 97.1 103 45.6
Pp3c1_22230 Physcomitrium patens HOM05D005252 ORTHO05D006788 2.3e-18 95.9 98 48.0
Hund22213 Selenicereus undatus HOM05D005252 ORTHO05D006788 4.0e-18 95.1 120 44.2
AagrBONN_evm.TU.Sc2ySwM_344.1683 Anthoceros agrestis HOM05D005252 ORTHO05D006788 6.8e-18 94.4 82 53.7
TAR622G0830 Trochodendron aralioides HOM05D005252 ORTHO05D006788 9.1e-15 84.0 69 59.4
Gohir.A08G081162 Gossypium hirsutum HOM05D005252 ORTHO05D006788 1.6e-14 83.2 66 60.6
Gohir.A11G239440 Gossypium hirsutum HOM05D005252 ORTHO05D006788 1.6e-14 83.2 66 60.6
Gohir.A02G112713 Gossypium hirsutum HOM05D005252 ORTHO05D006788 2.0e-14 82.8 78 51.3
Gohir.A01G173232 Gossypium hirsutum HOM05D005252 ORTHO05D006788 4.5e-14 81.6 66 59.1
Migut.K00975 Erythranthe guttata HOM05D005252 ORTHO05D006788 5.9e-14 81.3 108 44.4
Gohir.A06G122900 Gossypium hirsutum HOM05D005252 ORTHO05D006788 2.9e-13 79.0 70 52.9
Gohir.A13G083166 Gossypium hirsutum HOM05D005252 ORTHO05D006788 1.9e-12 76.3 61 60.7
Gohir.A01G088400 Gossypium hirsutum HOM05D005252 ORTHO05D006788 2.5e-12 75.9 75 52.0
arahy.Tifrunner.gnm1.ann1.P1K6DT Arachis hypogaea HOM05D005252 ORTHO05D006788 3.6e-11 72.0 65 61.5
MELO3C020240.2 Cucumis melo HOM05D005252 ORTHO05D006788 6.1e-11 71.2 79 46.8
vmacro18507 Vaccinium macrocarpon HOM05D005252 ORTHO05D006788 1.0e-10 70.5 106 38.7
Mapoly0060s0113 Marchantia polymorpha HOM05D005252 ORTHO05D006788 2.0e-09 66.2 71 46.5
MCO06G238 Micromonas commoda HOM05D005252 ORTHO05D006788 4.4e-09 65.1 98 37.8
Cre10.g437829 Chlamydomonas reinhardtii HOM05D005252 ORTHO05D006788 7.5e-09 64.3 96 37.5
Gohir.A07G145950 Gossypium hirsutum HOM05D005252 ORTHO05D006788 1.8e-07 59.7 49 59.2
Oeu024984.1 Olea europaea HOM05D005252 ORTHO05D006788 2.0e-06 56.2 50 54.0


User provided reference genes

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