Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049192 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 1.1e-236 822.8 389 100.0
Actinidia24060 Actinidia chinensis HOM05D006195 ORTHO05D007710 6.1e-182 641.0 362 82.6
Rhsim02G0120000 Rhododendron simsii HOM05D006195 ORTHO05D007710 6.1e-182 641.0 367 81.2
vmacro15867 Vaccinium macrocarpon HOM05D006195 ORTHO05D007710 2.6e-172 609.0 363 78.8
MD10G1303200 Malus domestica HOM05D006195 ORTHO05D007710 4.8e-163 578.2 365 73.2
QL04p018330 Quercus lobata HOM05D006195 ORTHO05D007710 2.7e-161 572.4 363 74.1
Prupe.4G036600 Prunus persica HOM05D006195 ORTHO05D007710 5.9e-161 571.2 372 72.3
Eucgr.E03701 Eucalyptus grandis HOM05D006195 ORTHO05D007710 2.9e-160 568.9 367 72.8
Lsat_1_v5_gn_7_19641 Lactuca sativa HOM05D006195 ORTHO05D007710 8.5e-160 567.4 365 72.1
Ciclev10015313m.g Citrus clementina HOM05D006195 ORTHO05D007710 1.1e-159 567.0 366 72.7
Gorai.009G173800 Gossypium raimondii HOM05D006195 ORTHO05D007710 1.9e-159 566.2 347 74.9
Cpa.g.sc27.120 Carica papaya HOM05D006195 ORTHO05D007710 3.2e-159 565.5 353 73.7
Gohir.D05G168600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 3.2e-159 565.5 347 74.6
HanXRQChr14g0437281 Helianthus annuus HOM05D006195 ORTHO05D007710 3.2e-159 565.5 378 70.9
Gohir.A05G165600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 5.5e-159 564.7 347 74.6
Sc17g0006620 Simmondsia chinensis HOM05D006195 ORTHO05D007710 5.5e-159 564.7 367 70.8
CsaV3_1G011800 Cucumis sativus L. HOM05D006195 ORTHO05D007710 9.4e-159 563.9 352 73.9
Oeu038214.1 Olea europaea HOM05D006195 ORTHO05D007710 1.2e-158 563.5 367 71.1
RcHm_v2.0_Chr5g0006371 Rosa chinensis HOM05D006195 ORTHO05D007710 2.1e-158 562.8 367 69.8
Atru.chr10.2006 Acer truncatum HOM05D006195 ORTHO05D007710 3.6e-158 562.0 376 71.5
Sed0022279 Sechium edule HOM05D006195 ORTHO05D007710 4.7e-158 561.6 352 72.7
Cfa000355 Carpinus fangiana HOM05D006195 ORTHO05D007710 6.1e-158 561.2 370 72.4
CiPaw.09G158100 Carya illinoinensis HOM05D006195 ORTHO05D007710 6.1e-158 561.2 367 70.3
Lj2A280G38 Lonicera japonica HOM05D006195 ORTHO05D007710 8.0e-158 560.8 398 68.6
Thecc.06G199000 Theobroma cacao HOM05D006195 ORTHO05D007710 8.0e-158 560.8 347 74.4
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 1.4e-157 560.1 365 71.8
PGSC0003DMG400022408 Solanum tuberosum HOM05D006195 ORTHO05D007710 2.3e-157 559.3 367 71.7
Potri.011G043000 Populus trichocarpa HOM05D006195 ORTHO05D007710 4.0e-157 558.5 376 70.5
Aqoxy1G02740 Aquilegia oxysepala HOM05D006195 ORTHO05D007710 8.8e-157 557.4 363 71.3
Solyc02g079110.3 Solanum lycopersicum HOM05D006195 ORTHO05D007710 1.2e-156 557.0 367 71.4
Sopen02g023920 Solanum pennellii HOM05D006195 ORTHO05D007710 1.2e-156 557.0 367 71.4
ClCG03G005530 Citrullus lanatus HOM05D006195 ORTHO05D007710 2.0e-156 556.2 355 72.4
Cc02_g12450 Coffea canephora HOM05D006195 ORTHO05D007710 2.6e-156 555.8 373 70.8
FAN11G1039 Fragaria x ananassa HOM05D006195 ORTHO05D007710 2.6e-156 555.8 370 70.3
Peaxi162Scf00355g00914 Petunia axillaris HOM05D006195 ORTHO05D007710 2.6e-156 555.8 381 70.1
FvH4_3g04030 Fragaria vesca HOM05D006195 ORTHO05D007710 5.7e-156 554.7 371 70.1
GSVIVG01003194001 Vitis vinifera HOM05D006195 ORTHO05D007710 7.5e-156 554.3 355 72.4
Lalb_Chr09g0327371 Lupinus albus HOM05D006195 ORTHO05D007710 1.3e-155 553.5 361 73.1
TWI38G0511 Tripterygium wilfordii HOM05D006195 ORTHO05D007710 1.3e-155 553.5 374 69.5
EL10Ac8g20527 Beta vulgaris HOM05D006195 ORTHO05D007710 4.8e-155 551.6 362 69.3
MD05G1325300 Malus domestica HOM05D006195 ORTHO05D007710 1.8e-154 549.7 366 70.5
PGR042G1193 Punica granatum HOM05D006195 ORTHO05D007710 5.4e-154 548.1 359 70.2
arahy.Tifrunner.gnm1.ann1.HDHM3Z Arachis hypogaea HOM05D006195 ORTHO05D007710 1.2e-153 547.0 349 72.8
arahy.Tifrunner.gnm1.ann1.IWY5CJ Arachis hypogaea HOM05D006195 ORTHO05D007710 2.0e-153 546.2 366 70.2
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 2.7e-153 545.8 346 73.1
Medtr4g091080 Medicago truncatula HOM05D006195 ORTHO05D007710 2.7e-153 545.8 365 70.4
Ca_18483_v3 Cicer arietinum L. HOM05D006195 ORTHO05D007710 1.0e-152 543.9 378 68.8
SalBow8G2471 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.7e-152 543.1 362 71.3
MBI14_g15641_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 2.9e-152 542.3 371 69.0
Sabra11G0029600 Salix brachista HOM05D006195 ORTHO05D001726 6.6e-152 541.2 352 71.9
PSO675G1294 Papaver somniferum HOM05D006195 ORTHO05D007710 8.6e-152 540.8 374 67.6
CANSAT56G3748 Cannabis sativa HOM05D006195 ORTHO05D007710 1.9e-151 539.7 355 70.7
Migut.M01211 Erythranthe guttata HOM05D006195 ORTHO05D007710 3.3e-151 538.9 368 69.0
TAR629G3096 Trochodendron aralioides HOM05D006195 ORTHO05D007710 4.2e-151 538.5 334 74.6
VMungo0251G2515 Vigna mungo HOM05D006195 ORTHO05D007710 4.2e-151 538.5 359 71.0
SGA_v2.0_scaffold7G03951 Striga asiatica HOM05D006195 ORTHO05D007710 7.2e-151 537.7 370 68.6
MSTRG.8639 Avicennia marina HOM05D006195 ORTHO05D007710 1.2e-150 537.0 371 68.5
Migut.I00196 Erythranthe guttata HOM05D006195 ORTHO05D007710 2.1e-150 536.2 370 69.2
Nitab4.5_0009994g0040 Nicotiana tabacum HOM05D006195 ORTHO05D007710 2.1e-150 536.2 398 66.1
Glyma.07G190200 Glycine max HOM05D006195 ORTHO05D007710 4.0e-149 531.9 378 68.0
Phvul.002G222200 Phaseolus vulgaris HOM05D006195 ORTHO05D007710 5.2e-149 531.6 370 68.4
Carub.0007s1990 Capsella rubella HOM05D006195 ORTHO05D007710 4.4e-148 528.5 359 67.1
AL7G32530 Arabidopsis lyrata HOM05D006195 ORTHO05D007710 1.3e-147 526.9 367 65.9
Haze_06571 Corylus avellana HOM05D006195 ORTHO05D007710 2.2e-147 526.2 327 75.5
Thhalv10025271m.g Eutrema salsugineum HOM05D006195 ORTHO05D007710 2.2e-147 526.2 365 66.3
AT4G21520 Arabidopsis thaliana HOM05D006195 ORTHO05D007710 3.7e-147 525.4 350 68.6
A01p12830 Brassica napus HOM05D006195 ORTHO05D007710 4.9e-147 525.0 364 66.2
THA.LOC104806275 Tarenaya hassleriana HOM05D006195 ORTHO05D007710 6.3e-147 524.6 354 68.9
Aa31LG6G3540 Aethionema arabicum HOM05D006195 ORTHO05D007710 8.3e-147 524.2 349 68.5
BcaNung02791 Brassica carinata HOM05D006195 ORTHO05D007710 1.1e-146 523.9 364 66.2
Lj4g0017156 Lotus japonicus HOM05D006195 ORTHO05D007710 1.8e-146 523.1 369 67.5
BraA01t01227Z Brassica rapa HOM05D006195 ORTHO05D007710 3.2e-146 522.3 365 65.8
FAN25G3765 Fragaria x ananassa HOM05D006195 ORTHO05D007710 4.1e-146 521.9 388 65.5
Sp7g19630 Schrenkiella parvula HOM05D006195 ORTHO05D007710 1.6e-145 520.0 364 65.7
CARHR228180 Cardamine hirsuta HOM05D006195 ORTHO05D007710 5.9e-145 518.1 368 64.7
ATR0693G097 Amborella trichopoda HOM05D006195 ORTHO05D007710 2.3e-144 516.2 369 65.6
C01p15450 Brassica napus HOM05D006195 ORTHO05D007710 2.9e-144 515.8 364 65.4
BolC1t01499H Brassica oleracea HOM05D006195 ORTHO05D007710 2.9e-144 515.8 364 65.4
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 5.0e-144 515.0 358 68.7
Manes.17G039200 Manihot esculenta HOM05D006195 ORTHO05D007710 5.6e-143 511.5 338 71.6
Duzib235G1322 Durio zibethinus HOM05D006195 ORTHO05D007710 9.5e-143 510.8 347 69.5
Os03g0738000 Oryza sativa ssp. japonica HOM05D006195 ORTHO05D007710 1.4e-141 506.9 347 67.4
DCAR_008069 Daucus carota HOM05D006195 ORTHO05D007710 1.4e-138 496.9 369 65.6
FAN21G3429 Fragaria x ananassa HOM05D006195 ORTHO05D007710 4.1e-138 495.4 379 63.6
AUR62014719 Chenopodium quinoa HOM05D006195 ORTHO05D007710 5.4e-138 495.0 360 65.8
MELO3C002557.2 Cucumis melo HOM05D006195 ORTHO05D007710 5.4e-138 495.0 355 66.5
Zm00001eb056530 Zea mays HOM05D006195 ORTHO05D007710 2.8e-134 482.6 362 63.8
CDE11G0466 Ceratophyllum demersum HOM05D006195 ORTHO05D007710 3.6e-134 482.3 338 65.7
Ah.14g088920 Amaranthus hybridus HOM05D006195 ORTHO05D007710 1.5e-132 476.9 370 61.1
Nitab4.5_0000190g0110 Nicotiana tabacum HOM05D006195 ORTHO05D007710 4.6e-129 465.3 324 69.1
AagrBONN_evm.TU.Sc2ySwM_344.4192 Anthoceros agrestis HOM05D006195 ORTHO05D007710 2.5e-127 459.5 368 59.5
Mapoly0082s0056 Marchantia polymorpha HOM05D006195 ORTHO05D007710 1.4e-125 453.8 376 56.1
Pp3c6_22670 Physcomitrium patens HOM05D006195 ORTHO05D007710 3.2e-122 442.6 374 56.4
Hund23609 Selenicereus undatus HOM05D006195 ORTHO05D007710 3.9e-120 435.6 317 65.3
Dinv40483 Davidia involucrata HOM05D006195 ORTHO05D007710 3.9e-112 409.1 237 79.3
SMO137G0351 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 5.6e-111 405.2 329 57.1
AUR62016899 Chenopodium quinoa HOM05D006195 ORTHO05D007710 3.6e-110 402.5 331 59.8
MBI14_g13652_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 6.9e-109 398.3 371 56.1
unitig_37.g12337 Utricularia gibba HOM05D006195 ORTHO05D007710 2.0e-108 396.7 383 54.3
CBR_g41455 Chara braunii HOM05D006195 ORTHO05D007710 1.6e-105 387.1 382 48.4
CBR_g20417 Chara braunii HOM05D006195 ORTHO05D007710 4.6e-105 385.6 368 49.7
Psat7g108560 Pisum sativum HOM05D006195 ORTHO05D007710 2.1e-102 376.7 256 68.0
Potri.004G034600 Populus trichocarpa HOM05D006195 ORTHO05D007710 1.1e-87 327.8 266 61.7
SMO116G0485 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 7.1e-82 308.5 274 53.6
Cre07.g326350 Chlamydomonas reinhardtii HOM05D006195 ORTHO05D007710 3.0e-80 303.1 357 44.3
TPR.G37128 Trifolium pratense HOM05D006195 ORTHO05D007710 2.2e-78 297.0 182 75.3
Eucgr.L01396 Eucalyptus grandis HOM05D006195 ORTHO05D007710 5.3e-77 292.4 201 68.2
SalBow6G2099 Salvia bowleyana HOM05D006195 ORTHO05D007710 5.9e-76 288.9 171 77.8
SalBow6G4337 Salvia bowleyana HOM05D006195 ORTHO05D007710 5.9e-76 288.9 171 77.8
HPP92_018057 Vanilla planifolia HOM05D006195 ORTHO05D007710 3.7e-70 269.6 242 53.7
MCO07G204 Micromonas commoda HOM05D006195 ORTHO05D007710 6.9e-69 265.4 421 36.3
Nn1g03899 Nelumbo nucifera HOM05D006195 ORTHO05D007710 2.1e-65 253.8 398 41.2
SalBow1G5137 Salvia bowleyana HOM05D006195 ORTHO05D007710 7.4e-63 245.4 146 77.4
GSVIVG01003189001 Vitis vinifera HOM05D006195 ORTHO05D007710 1.2e-47 194.9 141 65.2
SalBow4G2205 Salvia bowleyana HOM05D006195 ORTHO05D007710 8.3e-46 188.7 103 80.6
CSS0050458 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D007710 2.4e-45 187.2 89 95.5
Manes.10G084901 Manihot esculenta HOM05D006195 ORTHO05D007710 5.4e-45 186.0 127 70.9
PRCOL_00004057 Prasinoderma coloniale HOM05D006195 ORTHO05D007710 2.1e-41 174.1 373 29.8
SalBow1G7985 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.2e-39 168.3 121 66.1
SHI02125 Sapria himalayana HOM05D006195 ORTHO05D007710 4.9e-38 162.9 101 72.3
Dinv18994 Davidia involucrata HOM05D006195 ORTHO05D007710 3.8e-35 153.3 99 70.7
Nitab4.5_0003834g0010 Nicotiana tabacum HOM05D006195 ORTHO05D007710 2.5e-34 150.6 90 75.6
Thecc.06G199100 Theobroma cacao HOM05D006195 ORTHO05D007710 2.5e-34 150.6 100 69.0
SHI48938 Sapria himalayana HOM05D006195 ORTHO05D007710 2.6e-31 140.6 100 62.0
SEGI_17138 Sequoiadendron giganteum HOM05D006195 ORTHO05D007710 4.6e-28 129.8 80 65.0
HPP92_018063 Vanilla planifolia HOM05D006195 ORTHO05D007710 1.9e-13 81.3 102 45.1
SHI02124 Sapria himalayana HOM05D006195 ORTHO05D007710 3.0e-11 73.9 171 32.7
Solyc03g120010.4 Solanum lycopersicum HOM05D003006 ORTHO05D003438 7.3e-10 69.3 223 25.1
Sopen03g038890 Solanum pennellii HOM05D003006 ORTHO05D003438 7.3e-10 69.3 223 25.1
PGSC0003DMG400005609 Solanum tuberosum HOM05D003006 ORTHO05D003438 1.2e-09 68.6 223 24.7
HanXRQChr09g0256871 Helianthus annuus HOM05D002999 ORTHO05D003137 3.1e-08 63.9 355 20.3
HanXRQChr00c0537g0575611 Helianthus annuus HOM05D002999 ORTHO05D003137 4.0e-08 63.5 355 20.8
HanXRQChr15g0466521 Helianthus annuus HOM05D002999 ORTHO05D003137 4.0e-08 63.5 355 20.6
PGR102G2844 Punica granatum HOM05D003006 ORTHO05D003438 4.0e-08 63.5 223 25.1
THA.LOC104812490 Tarenaya hassleriana HOM05D003006 ORTHO05D003438 5.2e-08 63.2 232 25.4
AagrBONN_evm.TU.Sc2ySwM_228.3731 Anthoceros agrestis HOM05D002999 ORTHO05D003137 6.8e-08 62.8 237 24.5
Nitab4.5_0004238g0040 Nicotiana tabacum HOM05D002999 ORTHO05D003137 1.2e-07 62.0 212 25.5
Potri.001G174600 Populus trichocarpa HOM05D003006 ORTHO05D003438 2.0e-07 61.2 223 23.3
Atru.chr7.1250 Acer truncatum HOM05D003006 ORTHO05D003438 3.4e-07 60.5 253 23.3
Sabra01G0137500 Salix brachista HOM05D003006 ORTHO05D003438 3.4e-07 60.5 223 23.3
Migut.M00121 Erythranthe guttata HOM05D001610 ORTHO05D001585 5.8e-07 59.7 231 25.5
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 1.7e-06 58.2 220 23.2
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 2.2e-06 57.8 220 23.2
Pp3c2_19830 Physcomitrium patens HOM05D002999 ORTHO05D003137 4.9e-06 56.6 245 23.7
Carub.0008s1023 Capsella rubella HOM05D000464 ORTHO05D006292 6.4e-06 56.2 229 23.1
AUR62043984 Chenopodium quinoa HOM05D002999 ORTHO05D003137 8.4e-06 55.8 125 34.4


User provided reference genes

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