Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049190 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 2.3e-54 215.3 108 100.0
CSS0033050 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 3.0e-46 188.3 117 83.8
CSS0034676 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 3.0e-22 108.6 122 56.6
Thecc.03G213700 Theobroma cacao HOM05D000087 ORTHO05D005735 1.2e-10 70.1 66 56.1
Haze_09232 Corylus avellana HOM05D000087 ORTHO05D005735 5.9e-10 67.8 76 52.6
Cfa011874 Carpinus fangiana HOM05D000087 ORTHO05D005735 7.7e-10 67.4 77 53.2
Lj2C147G10 Lonicera japonica HOM05D000087 ORTHO05D005735 2.2e-09 65.9 77 51.9
GSVIVG01019707001 Vitis vinifera HOM05D000087 ORTHO05D005735 2.9e-09 65.5 69 55.1
Phvul.011G167550 Phaseolus vulgaris HOM05D000087 ORTHO05D005735 8.5e-09 63.9 88 47.7
Gohir.A08G107500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 1.1e-08 63.5 76 51.3
RcHm_v2.0_Chr7g0188131 Rosa chinensis HOM05D000087 ORTHO05D005735 1.1e-08 63.5 76 50.0
VMungo1127G0184 Vigna mungo HOM05D000087 ORTHO05D005735 1.1e-08 63.5 88 47.7
Duzib068G0232 Durio zibethinus HOM05D000087 ORTHO05D005735 1.5e-08 63.2 76 50.0
CSS0007327 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.9e-08 62.8 107 43.0
CSS0034403 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.9e-08 62.8 107 43.0
Gohir.D08G120500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 2.5e-08 62.4 76 51.3
Gorai.004G127300 Gossypium raimondii HOM05D000087 ORTHO05D005735 2.5e-08 62.4 76 51.3
MD06G1127500 Malus domestica HOM05D000087 ORTHO05D005735 2.5e-08 62.4 76 48.7
FvH4_5g10170 Fragaria vesca HOM05D000087 ORTHO05D005735 3.2e-08 62.0 76 51.3
FAN04G3195 Fragaria x ananassa HOM05D000087 ORTHO05D005735 3.2e-08 62.0 76 51.3
FAN18G4270 Fragaria x ananassa HOM05D000087 ORTHO05D005735 3.2e-08 62.0 76 51.3
Prupe.5G137300 Prunus persica HOM05D000087 ORTHO05D005735 3.2e-08 62.0 76 50.0
Ciclev10018581m.g Citrus clementina HOM05D000087 ORTHO05D005735 4.2e-08 61.6 77 46.8
DCAR_010123 Daucus carota HOM05D000087 ORTHO05D005735 4.2e-08 61.6 77 45.5
CsaV3_5G001350 Cucumis sativus L. HOM05D000087 ORTHO05D005735 5.5e-08 61.2 76 47.4
QL02p026653 Quercus lobata HOM05D000087 ORTHO05D005735 5.5e-08 61.2 76 50.0
Dinv11465 Davidia involucrata HOM05D000087 ORTHO05D005735 7.2e-08 60.8 77 46.8
Manes.17G015000 Manihot esculenta HOM05D000087 ORTHO05D005735 7.2e-08 60.8 76 44.7
Glyma.06G180700 Glycine max HOM05D000087 ORTHO05D005735 1.6e-07 59.7 87 43.7
TWI81G0850 Tripterygium wilfordii HOM05D000087 ORTHO05D005735 1.6e-07 59.7 76 50.0
CDE02G0276 Ceratophyllum demersum HOM05D000087 ORTHO05D005735 2.1e-07 59.3 89 46.1
Rhsim02G0255700 Rhododendron simsii HOM05D000087 ORTHO05D005735 2.1e-07 59.3 75 49.3
CiPaw.11G106200 Carya illinoinensis HOM05D000087 ORTHO05D005735 2.7e-07 58.9 76 48.7
HanXRQChr01g0016041 Helianthus annuus HOM05D000087 ORTHO05D005735 3.6e-07 58.5 77 44.2
TAR629G0355 Trochodendron aralioides HOM05D000087 ORTHO05D005735 6.1e-07 57.8 77 44.2
CANSAT64G2851 Cannabis sativa HOM05D000087 ORTHO05D005735 8.0e-07 57.4 76 43.4
Medtr3g080640 Medicago truncatula HOM05D000087 ORTHO05D005735 8.0e-07 57.4 87 41.4
Nn3g18737 Nelumbo nucifera HOM05D000087 ORTHO05D005735 8.0e-07 57.4 83 43.4
Sabra16G0307100 Salix brachista HOM05D000087 ORTHO05D005735 8.0e-07 57.4 76 44.7
ClCG01G001230 Citrullus lanatus HOM05D000087 ORTHO05D005735 1.0e-06 57.0 76 46.1
Atru.chr9.2610 Acer truncatum HOM05D000087 ORTHO05D005735 1.8e-06 56.2 76 46.1
Sed0004639 Sechium edule HOM05D000087 ORTHO05D005735 1.8e-06 56.2 77 46.8
MELO3C005812.2 Cucumis melo HOM05D000087 ORTHO05D005735 2.3e-06 55.8 76 44.7
Lalb_Chr14g0362591 Lupinus albus HOM05D000087 ORTHO05D005735 2.3e-06 55.8 87 42.5
AUR62009145 Chenopodium quinoa HOM05D000087 ORTHO05D005735 4.0e-06 55.1 71 45.1
AUR62039113 Chenopodium quinoa HOM05D000087 ORTHO05D005735 4.0e-06 55.1 71 45.1
Psat5g111000 Pisum sativum HOM05D000087 ORTHO05D005735 4.0e-06 55.1 89 40.4
Lj6g0001276 Lotus japonicus HOM05D000087 ORTHO05D005735 5.2e-06 54.7 87 42.5
ATR0579G142 Amborella trichopoda HOM05D000087 ORTHO05D005735 6.7e-06 54.3 77 42.9
ECA246G1365 Erigeron canadensis HOM05D000087 ORTHO05D005735 6.7e-06 54.3 77 41.6
FAN18G0494 Fragaria x ananassa HOM05D000087 ORTHO05D005735 6.7e-06 54.3 63 47.6
SGA_v2.0_scaffold123G33449 Striga asiatica HOM05D000087 ORTHO05D005735 6.7e-06 54.3 74 45.9
Lsat_1_v5_gn_3_13301 Lactuca sativa HOM05D000087 ORTHO05D005735 8.8e-06 53.9 78 39.7
Sp7g37630 Schrenkiella parvula HOM05D000087 ORTHO05D005735 8.8e-06 53.9 75 42.7
Solyc07g008450.3 Solanum lycopersicum HOM05D000087 ORTHO05D005735 8.8e-06 53.9 74 48.6


User provided reference genes

Program Settings