Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 0.0e+00 1080.9 547 100.0
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 0.0e+00 1077.0 547 99.6
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 1.0e-280 969.5 549 87.8
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 3.6e-273 944.5 550 84.7
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 2.4e-269 931.8 550 83.6
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 4.1e-269 931.0 549 83.8
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 4.1e-269 931.0 525 89.3
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 2.1e-268 928.7 567 82.0
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 3.5e-268 927.9 550 82.5
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 6.6e-267 923.7 550 82.0
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 3.3e-266 921.4 551 82.9
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 4.3e-266 921.0 566 80.4
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 2.1e-265 918.7 594 78.3
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 2.8e-265 918.3 554 82.5
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 8.1e-265 916.8 578 79.9
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 1.2e-263 912.9 552 82.8
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 4.4e-263 911.0 572 80.1
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 2.2e-262 908.7 549 82.0
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 1.9e-261 905.6 550 81.5
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 1.6e-260 902.5 551 80.2
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 2.7e-260 901.7 546 82.1
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 2.7e-260 901.7 597 76.9
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 4.6e-260 901.0 556 80.4
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 7.8e-260 900.2 555 79.5
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 1.7e-259 899.0 547 80.1
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 5.1e-259 897.5 546 81.0
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 1.9e-258 895.6 547 79.9
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 5.6e-258 894.0 562 79.5
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 7.3e-258 893.6 547 79.9
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 2.1e-257 892.1 555 79.5
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 2.8e-257 891.7 565 78.8
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 2.8e-257 891.7 574 77.5
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 4.7e-257 891.0 550 79.8
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 1.8e-256 889.0 550 79.6
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 1.5e-255 885.9 552 80.3
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 2.0e-255 885.6 550 78.7
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 2.6e-255 885.2 547 79.2
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 4.9e-254 880.9 550 78.9
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 2.1e-252 875.5 554 78.3
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 4.6e-252 874.4 577 75.9
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 1.0e-251 873.2 549 79.2
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 1.7e-251 872.5 548 78.8
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 2.3e-251 872.1 559 78.7
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 5.1e-251 870.9 559 78.4
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 9.6e-250 866.7 547 78.1
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 8.1e-249 863.6 549 78.7
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 8.1e-249 863.6 544 77.9
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 4.0e-248 861.3 491 85.1
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 1.3e-246 856.3 545 76.9
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 1.7e-246 855.9 593 72.3
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 3.8e-246 854.7 549 76.5
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 3.8e-246 854.7 548 77.0
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 6.4e-246 854.0 535 78.5
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 8.4e-246 853.6 584 74.1
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 1.4e-245 852.8 555 76.0
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 2.4e-245 852.0 549 76.5
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 7.1e-245 850.5 553 76.5
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 3.9e-243 844.7 549 75.8
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 6.6e-243 844.0 665 67.1
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 1.9e-242 842.4 551 75.3
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 2.5e-242 842.0 549 77.2
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 5.6e-242 840.9 575 74.3
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 7.3e-242 840.5 549 75.4
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 6.2e-241 837.4 550 75.1
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 8.1e-241 837.0 549 74.9
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 2.3e-235 818.9 562 74.6
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 3.0e-235 818.5 493 84.0
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 8.7e-235 817.0 462 85.7
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 1.9e-234 815.8 524 77.3
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 1.9e-234 815.8 538 76.8
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 1.3e-233 813.1 550 72.5
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 2.8e-233 812.0 521 78.7
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 6.2e-233 810.8 547 74.2
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 2.0e-231 805.8 547 73.7
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 3.4e-231 805.1 550 73.6
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 3.8e-230 801.6 548 72.6
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 4.9e-230 801.2 609 68.8
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 1.9e-229 799.3 554 71.8
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 5.5e-229 797.7 553 71.6
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 2.7e-228 795.4 559 70.8
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 4.6e-228 794.7 550 73.6
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 3.8e-222 775.0 596 66.8
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.4e-221 773.1 584 68.8
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 1.9e-221 772.7 545 72.5
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 2.7e-220 768.8 483 78.5
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 2.7e-220 768.8 443 84.4
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 8.7e-219 763.8 530 72.8
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 3.8e-214 748.4 489 74.4
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 7.9e-212 740.7 494 74.5
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 3.3e-210 735.3 484 75.8
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 2.6e-207 725.7 440 80.0
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 8.5e-206 720.7 517 74.7
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 2.0e-202 709.5 556 67.4
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 3.3e-202 708.8 531 65.5
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 5.3e-200 701.4 574 64.8
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 9.1e-200 700.7 515 67.2
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 7.7e-191 671.0 449 74.2
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 1.5e-186 656.8 548 61.1
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 2.0e-186 656.4 500 62.6
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 4.5e-183 645.2 513 63.0
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 1.0e-182 644.0 469 69.7
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 2.5e-181 639.4 548 63.0
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 1.0e-179 634.0 425 72.7
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 6.8e-171 604.7 454 70.7
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 3.4e-170 602.4 343 87.5
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 6.8e-163 578.2 370 81.4
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 8.6e-158 561.2 486 59.1
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 3.6e-156 555.8 485 58.8
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 3.4e-154 549.3 322 83.9
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 4.4e-146 522.3 320 79.7
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 6.0e-143 511.9 293 87.4
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 3.4e-130 469.5 478 48.5
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 6.2e-124 448.7 271 83.0
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 4.0e-123 446.0 443 57.3
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 8.4e-113 411.8 257 77.8
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 1.4e-107 394.4 402 55.7
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 1.0e-102 378.3 228 81.1
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 3.0e-94 350.1 205 83.9
COL.COLO4_15980 Corchorus olitorius HOM05D004684 ORTHO05D006904 5.1e-94 349.4 210 78.6
Lj3C639G0 Lonicera japonica HOM05D004684 ORTHO05D006904 5.7e-93 345.9 210 80.0
RcHm_v2.0_Chr4g0395921 Rosa chinensis HOM05D004684 ORTHO05D006904 1.0e-86 325.1 209 73.7
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 5.3e-83 312.8 183 82.5
CsaV3_2G012380 Cucumis sativus L. HOM05D004684 ORTHO05D006904 1.2e-82 311.6 208 72.1
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 2.9e-73 280.4 472 37.7
SEGI_18835 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 3.6e-63 246.9 148 78.4
Psat2g046760 Pisum sativum HOM05D004684 ORTHO05D006904 1.9e-56 224.6 139 79.9
FvH4_4g04730 Fragaria vesca HOM05D004684 ORTHO05D006904 1.2e-53 215.3 314 45.9
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 1.1e-51 208.8 431 33.6
BcaB06g26612 Brassica carinata HOM05D004684 ORTHO05D006904 3.0e-49 200.7 184 56.0
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 3.9e-41 173.7 361 34.1
Psat0s5182g0040 Pisum sativum HOM05D004684 ORTHO05D006904 1.6e-39 168.3 89 85.4
Psat3g087000 Pisum sativum HOM05D004684 ORTHO05D006904 1.6e-39 168.3 89 85.4
Phvul.002G091800 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 8.9e-38 162.5 134 60.4
FAN12G0780 Fragaria x ananassa HOM05D004684 ORTHO05D006904 8.3e-36 156.0 146 58.9
Oeu059393.1 Olea europaea HOM05D004684 ORTHO05D029065 8.6e-33 146.0 114 71.1
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 1.2e-31 142.1 123 61.0
C07p12070 Brassica napus HOM05D004684 ORTHO05D027888 2.7e-26 124.4 151 49.7
SEGI_09601 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 2.3e-25 121.3 69 82.6
GSVIVG01027937001 Vitis vinifera HOM05D004684 ORTHO05D029065 5.6e-24 116.7 66 89.4
BraA07t28588Z Brassica rapa HOM05D004684 ORTHO05D027888 2.6e-21 107.8 141 44.7
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 4.4e-21 107.1 64 79.7
Cc03_g06450 Coffea canephora HOM05D004684 ORTHO05D029065 7.6e-21 106.3 72 76.4
DCAR_018323 Daucus carota HOM05D004684 ORTHO05D000311 8.4e-20 102.8 79 62.0
MD13G1223600 Malus domestica HOM05D004684 ORTHO05D029065 8.4e-20 102.8 57 89.5
Cc03_g06430 Coffea canephora HOM05D004684 ORTHO05D006904 3.2e-19 100.9 52 90.4
Pp3c22_13460 Physcomitrium patens HOM05D004684 ORTHO05D314634 7.1e-19 99.8 119 46.2
A07p08010 Brassica napus HOM05D004684 ORTHO05D027888 1.7e-17 95.1 106 52.8
BcaC01g03330 Brassica carinata HOM05D004684 ORTHO05D006904 3.9e-17 94.0 117 44.4
Phvul.009G129001 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.3e-15 89.0 83 55.4
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 3.4e-13 80.9 58 72.4
BcaB06g27371 Brassica carinata HOM05D004684 ORTHO05D006904 3.2e-11 74.3 61 60.7
CAN.G1407.1 Capsicum annuum HOM05D004684 ORTHO05D016153 8.7e-09 66.2 46 67.4
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 1.1e-08 65.9 51 62.7
BolC7t41675H Brassica oleracea HOM05D004684 ORTHO05D027888 1.9e-08 65.1 72 47.2
BcaC06g35681 Brassica carinata HOM05D004684 ORTHO05D008836 4.8e-07 60.5 51 56.9
arahy.Tifrunner.gnm1.ann1.PGR81E Arachis hypogaea HOM05D004684 ORTHO05D082538 6.2e-07 60.1 43 67.4
GSVIVG01015375001 Vitis vinifera HOM05D002381 ORTHO05D002480 6.2e-07 60.1 132 33.3
arahy.Tifrunner.gnm1.ann1.G7A5RV Arachis hypogaea HOM05D004684 ORTHO05D083069 4.0e-06 57.4 38 71.1
BcaC09g50697 Brassica carinata HOM05D016273 ORTHO05D019880 5.3e-06 57.0 84 36.9
C01p25580 Brassica napus HOM05D016273 ORTHO05D019880 6.9e-06 56.6 84 36.9


User provided reference genes

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