Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049163 Camellia sinensis var. sinensis HOM05D007634 ORTHO05D004310 1.2e-90 337.0 249 100.0
Dinv10123 Davidia involucrata HOM05D009814 ORTHO05D004310 2.9e-36 156.4 247 63.6
Rhsim06G0057500 Rhododendron simsii HOM05D009814 ORTHO05D004310 3.7e-31 139.4 249 60.2
Hma1.2p1_0408F.1_g146500 Hydrangea macrophylla HOM05D009814 ORTHO05D004310 6.7e-25 118.6 248 59.3
Actinidia25864 Actinidia chinensis HOM05D009814 ORTHO05D004310 1.2e-18 97.8 112 53.6
Lj1C14T15 Lonicera japonica HOM05D009154 ORTHO05D004310 3.7e-15 86.3 239 32.6
QL12p018988 Quercus lobata HOM05D009154 ORTHO05D004310 7.0e-14 82.0 247 36.4
TAR362G0031 Trochodendron aralioides HOM05D007634 ORTHO05D004310 7.0e-14 82.0 248 51.6
TAR365G0785 Trochodendron aralioides HOM05D007634 ORTHO05D004310 7.0e-14 82.0 238 51.7
Thecc.01G317400 Theobroma cacao HOM05D009814 ORTHO05D004310 1.3e-12 77.8 244 51.2
FAN07G0504 Fragaria x ananassa HOM05D007634 ORTHO05D004310 8.5e-12 75.1 249 50.2
GSVIVG01028151001 Vitis vinifera HOM05D009814 ORTHO05D004310 8.5e-12 75.1 250 52.4
FvH4_4g20190 Fragaria vesca HOM05D007634 ORTHO05D004310 1.5e-11 74.3 253 49.8
FAN12G0129 Fragaria x ananassa HOM05D007634 ORTHO05D004310 1.5e-11 74.3 253 49.0
Manes.05G013000 Manihot esculenta HOM05D009154 ORTHO05D004310 1.9e-11 73.9 252 38.1
COL.COLO4_23198 Corchorus olitorius HOM05D009814 ORTHO05D004310 3.2e-11 73.2 236 49.6
Ciclev10021807m.g Citrus clementina HOM05D009814 ORTHO05D004310 5.5e-11 72.4 252 46.0
Duzib138G1730 Durio zibethinus HOM05D009814 ORTHO05D004310 5.5e-11 72.4 252 49.6
Gohir.A08G120000 Gossypium hirsutum HOM05D009814 ORTHO05D004310 1.2e-10 71.2 251 50.2
EL10As5g23572 Beta vulgaris HOM05D009154 ORTHO05D004310 3.6e-10 69.7 245 46.1
Prupe.1G113900 Prunus persica HOM05D007634 ORTHO05D004310 3.6e-10 69.7 250 50.8
RcHm_v2.0_Chr4g0425851 Rosa chinensis HOM05D007634 ORTHO05D004310 6.1e-10 68.9 249 50.2
Gohir.A11G108100 Gossypium hirsutum HOM05D009814 ORTHO05D004310 1.0e-09 68.2 254 48.0
Gohir.D08G141000 Gossypium hirsutum HOM05D009814 ORTHO05D004310 1.4e-09 67.8 257 52.5
GSVIVG01031256001 Vitis vinifera HOM05D007634 ORTHO05D004310 1.4e-09 67.8 254 41.7
Duzib211G0633 Durio zibethinus HOM05D009814 ORTHO05D004310 1.8e-09 67.4 248 44.0
Gorai.004G145000 Gossypium raimondii HOM05D009814 ORTHO05D004310 3.0e-09 66.6 256 52.0
PSO724G1196 Papaver somniferum HOM05D007634 ORTHO05D004310 4.0e-09 66.2 79 46.8
PSO421G0073 Papaver somniferum HOM05D007634 ORTHO05D004310 5.2e-09 65.9 79 46.8
Sc17g0000300 Simmondsia chinensis HOM05D009814 ORTHO05D004310 6.7e-09 65.5 245 49.0
Phvul.006G119700 Phaseolus vulgaris HOM05D007634 ORTHO05D004310 5.7e-08 62.4 73 49.3
TAR636G1196 Trochodendron aralioides HOM05D007634 ORTHO05D004310 5.7e-08 62.4 110 41.8
MD09G1285700 Malus domestica HOM05D018099 ORTHO05D020712 7.5e-08 62.0 250 42.8
MBI19_g03266_MAGBIO Magnolia biondii HOM05D003564 ORTHO05D005332 9.7e-08 61.6 247 51.8
Atru.chr5.960 Acer truncatum HOM05D009814 ORTHO05D004310 1.3e-07 61.2 251 50.2
VMungo0540G1967 Vigna mungo HOM05D007634 ORTHO05D004310 1.7e-07 60.8 80 47.5
Ah.11g049040 Amaranthus hybridus HOM05D009154 ORTHO05D004310 2.2e-07 60.5 78 50.0
MELO3C012929.2 Cucumis melo HOM05D009154 ORTHO05D004310 2.2e-07 60.5 259 30.1
Haze_01332 Corylus avellana HOM05D007634 ORTHO05D004310 2.8e-07 60.1 254 46.9
Thecc.04G304600 Theobroma cacao HOM05D007634 ORTHO05D004310 2.8e-07 60.1 79 45.6
TWI09G0962 Tripterygium wilfordii HOM05D007634 ORTHO05D004310 2.8e-07 60.1 248 46.4
DCAR_002881 Daucus carota HOM05D009154 ORTHO05D004310 3.7e-07 59.7 248 45.6
Lj3A834G63 Lonicera japonica HOM05D007634 ORTHO05D004310 6.3e-07 58.9 243 37.9
GSVIVG01034962001 Vitis vinifera HOM05D007634 ORTHO05D004310 6.3e-07 58.9 246 44.7
Oeu038043.2 Olea europaea HOM05D016587 ORTHO05D019830 8.2e-07 58.5 224 53.1
Potri.010G148200 Populus trichocarpa HOM05D007634 ORTHO05D004310 8.2e-07 58.5 249 45.8
Prupe.3G008100 Prunus persica HOM05D018099 ORTHO05D020712 8.2e-07 58.5 219 32.9
Ca_00964_v3 Cicer arietinum L. HOM05D007634 ORTHO05D004310 1.1e-06 58.2 76 47.4
Potri.008G102700 Populus trichocarpa HOM05D007634 ORTHO05D004310 1.1e-06 58.2 247 47.4
CsaV3_3G026560 Cucumis sativus L. HOM05D009154 ORTHO05D004310 1.4e-06 57.8 259 29.7
Nn3g21763 Nelumbo nucifera HOM05D007634 ORTHO05D004310 1.4e-06 57.8 109 42.2
Duzib151G0484 Durio zibethinus HOM05D007634 ORTHO05D004310 1.8e-06 57.4 76 46.1
Haze_01337 Corylus avellana HOM05D007634 ORTHO05D004310 2.4e-06 57.0 254 46.5
Cpa.g.sc9.28 Carica papaya HOM05D007634 ORTHO05D004310 3.1e-06 56.6 80 46.2
Oeu038954.2 Olea europaea HOM05D016587 ORTHO05D004310 3.1e-06 56.6 229 36.2
Os05g0131900 Oryza sativa ssp. japonica HOM05D024805 ORTHO05D025983 4.1e-06 56.2 60 50.0
Nn4g25534 Nelumbo nucifera HOM05D009814 ORTHO05D004310 5.3e-06 55.8 231 54.1
Aqoxy5G02697 Aquilegia oxysepala HOM05D009154 ORTHO05D004310 7.0e-06 55.5 250 29.2
Ciclev10005745m.g Citrus clementina HOM05D007634 ORTHO05D004310 9.1e-06 55.1 80 47.5
Manes.03G206900 Manihot esculenta HOM05D007634 ORTHO05D004310 9.1e-06 55.1 247 46.2


User provided reference genes

Program Settings