Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049092 Camellia sinensis var. sinensis HOM05D004546 ORTHO05D005419 9.0e-249 863.2 463 100.0
vmacro01757 Vaccinium macrocarpon HOM05D004546 ORTHO05D005419 3.7e-178 628.6 417 80.3
Rhsim09G0016100 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.8e-177 626.3 418 79.4
Rhsim11G0128800 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.7e-175 619.8 431 77.3
Hma1.2p1_1482F.1_g286200 Hydrangea macrophylla HOM05D004546 ORTHO05D005419 2.0e-168 596.3 417 74.6
PGSC0003DMG400010002 Solanum tuberosum HOM05D004546 ORTHO05D005419 7.5e-155 551.2 414 70.3
Cfa005513 Carpinus fangiana HOM05D004546 ORTHO05D005419 2.4e-153 546.2 418 68.9
GSVIVG01035964001 Vitis vinifera HOM05D004546 ORTHO05D005419 2.3e-151 539.7 414 69.1
CiPaw.05G045000 Carya illinoinensis HOM05D004546 ORTHO05D005419 2.4e-140 503.1 375 69.6
Thecc.05G227600 Theobroma cacao HOM05D004546 ORTHO05D005419 5.8e-139 498.4 418 62.4
Rhsim09G0048700 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.3e-138 497.3 329 79.9
Haze_01703 Corylus avellana HOM05D004546 ORTHO05D005419 1.7e-138 496.9 523 54.7
TAR628G0514 Trochodendron aralioides HOM05D004546 ORTHO05D005419 1.7e-138 496.9 391 67.0
DCAR_006706 Daucus carota HOM05D004546 ORTHO05D005419 3.8e-138 495.7 381 69.0
Sabra17G0029200 Salix brachista HOM05D004546 ORTHO05D005419 1.9e-137 493.4 451 59.9
Potri.017G043000 Populus trichocarpa HOM05D004546 ORTHO05D005419 4.2e-137 492.3 418 62.7
Duzib177G0829 Durio zibethinus HOM05D004546 ORTHO05D005419 5.4e-137 491.9 415 61.9
Sed0013794 Sechium edule HOM05D004546 ORTHO05D005419 9.3e-137 491.1 418 61.5
Lalb_Chr12g0204461 Lupinus albus HOM05D004546 ORTHO05D005419 1.3e-135 487.3 419 62.5
Actinidia00204 Actinidia chinensis HOM05D004546 ORTHO05D005419 3.0e-135 486.1 417 65.5
Dinv24291 Davidia involucrata HOM05D004546 ORTHO05D005419 1.9e-134 483.4 435 62.5
CsaV3_5G025650 Cucumis sativus L. HOM05D004546 ORTHO05D005419 5.6e-134 481.9 418 62.4
Prupe.1G570900 Prunus persica HOM05D004546 ORTHO05D005419 5.6e-134 481.9 418 61.0
Sopen10g008970 Solanum pennellii HOM05D004546 ORTHO05D005419 1.6e-133 480.3 414 63.0
ECA234G1828 Erigeron canadensis HOM05D004546 ORTHO05D005419 2.4e-132 476.5 415 60.5
Potri.007G116200 Populus trichocarpa HOM05D004546 ORTHO05D005419 1.5e-131 473.8 418 60.5
Nitab4.5_0000753g0130 Nicotiana tabacum HOM05D004546 ORTHO05D005419 4.4e-131 472.2 415 59.8
Nitab4.5_0003652g0050 Nicotiana tabacum HOM05D004546 ORTHO05D005419 7.6e-131 471.5 415 59.8
Migut.B00830 Erythranthe guttata HOM05D004546 ORTHO05D005419 9.9e-131 471.1 436 58.9
ClCG03G000010 Citrullus lanatus HOM05D004546 ORTHO05D005419 1.7e-130 470.3 454 57.5
Peaxi162Scf00152g01427 Petunia axillaris HOM05D004546 ORTHO05D005419 1.4e-129 467.2 413 62.7
MSTRG.16518 Avicennia marina HOM05D004546 ORTHO05D005419 1.2e-128 464.2 442 58.6
SHI16664 Sapria himalayana HOM05D004546 ORTHO05D005419 4.6e-128 462.2 420 59.3
Solyc10g019040.2 Solanum lycopersicum HOM05D004546 ORTHO05D005419 2.3e-127 459.9 414 61.1
Ciclev10015244m.g Citrus clementina HOM05D004546 ORTHO05D005419 4.3e-126 455.7 373 64.1
QL02p098920 Quercus lobata HOM05D004546 ORTHO05D005419 7.4e-126 454.9 351 67.8
Lj5A252T47 Lonicera japonica HOM05D004546 ORTHO05D005419 8.1e-125 451.4 417 59.7
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 1.3e-122 444.1 419 55.6
Gorai.001G269700 Gossypium raimondii HOM05D004546 ORTHO05D005419 2.2e-122 443.4 415 58.3
Atru.chr8.1488 Acer truncatum HOM05D004546 ORTHO05D005419 1.4e-121 440.7 418 57.7
Phvul.002G249700 Phaseolus vulgaris HOM05D004546 ORTHO05D005419 2.4e-121 439.9 417 57.1
THA.LOC104809617 Tarenaya hassleriana HOM05D004546 ORTHO05D005419 3.2e-121 439.5 418 56.0
Sc11g0004500 Simmondsia chinensis HOM05D004546 ORTHO05D005419 5.5e-121 438.7 418 53.3
FAN02G2941 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.2e-120 437.6 417 57.1
PSO210G6794 Papaver somniferum HOM05D004546 ORTHO05D005419 2.7e-120 436.4 416 56.2
Aqoxy6G00209 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 4.6e-120 435.6 413 56.4
CARHR052070 Cardamine hirsuta HOM05D004546 ORTHO05D005419 1.8e-119 433.7 419 55.4
PSO210G7371 Papaver somniferum HOM05D004546 ORTHO05D005419 1.9e-118 430.3 416 55.3
Cc02_g22580 Coffea canephora HOM05D004546 ORTHO05D005419 2.5e-118 429.9 415 54.7
Glyma.05G169000 Glycine max HOM05D004546 ORTHO05D005419 5.6e-118 428.7 410 57.3
CAN.G1330.18 Capsicum annuum HOM05D004546 ORTHO05D005419 7.4e-118 428.3 415 57.8
Eucgr.G00575 Eucalyptus grandis HOM05D004546 ORTHO05D005419 3.7e-117 426.0 369 60.7
MD08G1233000 Malus domestica HOM05D004546 ORTHO05D005419 3.7e-117 426.0 418 55.5
EL10Ac2g02703 Beta vulgaris HOM05D004546 ORTHO05D005419 3.1e-116 422.9 459 51.4
CANSAT54G1257 Cannabis sativa HOM05D004546 ORTHO05D005419 1.2e-115 421.0 369 59.9
VMungo0251G0798 Vigna mungo HOM05D004546 ORTHO05D005419 3.4e-115 419.5 445 51.7
RcHm_v2.0_Chr7g0222021 Rosa chinensis HOM05D004546 ORTHO05D005419 4.5e-115 419.1 417 54.7
Lj4g0018170 Lotus japonicus HOM05D004546 ORTHO05D005419 3.8e-114 416.0 420 56.0
MD15G1425300 Malus domestica HOM05D004546 ORTHO05D005419 3.8e-114 416.0 418 54.8
Sp2g03510 Schrenkiella parvula HOM05D004546 ORTHO05D005419 3.8e-114 416.0 419 54.7
Lsat_1_v5_gn_5_105520 Lactuca sativa HOM05D004546 ORTHO05D005419 3.2e-113 412.9 414 54.6
Manes.10G066500 Manihot esculenta HOM05D004546 ORTHO05D005419 4.2e-113 412.5 418 54.8
Sabra07G0094500 Salix brachista HOM05D004546 ORTHO05D005419 1.2e-112 411.0 585 43.9
Gohir.D06G191600 Gossypium hirsutum HOM05D004546 ORTHO05D005419 2.1e-112 410.2 415 54.7
GSVIVG01022895001 Vitis vinifera HOM05D004546 ORTHO05D005419 4.6e-112 409.1 417 55.2
Carub.0002s0420 Capsella rubella HOM05D004546 ORTHO05D005419 1.3e-111 407.5 419 52.0
FvH4_6g25020 Fragaria vesca HOM05D004546 ORTHO05D005419 3.0e-111 406.4 383 56.9
AT1G61000 Arabidopsis thaliana HOM05D004546 ORTHO05D005419 5.1e-111 405.6 419 51.8
TPR.G23101 Trifolium pratense HOM05D004546 ORTHO05D005419 1.1e-110 404.4 416 55.3
HanXRQChr10g0290511 Helianthus annuus HOM05D004546 ORTHO05D005419 4.3e-110 402.5 419 54.4
FAN05G4088 Fragaria x ananassa HOM05D004546 ORTHO05D005419 9.0e-108 394.8 402 54.2
Peaxi162Scf00152g01529 Petunia axillaris HOM05D004546 ORTHO05D005419 1.5e-107 394.0 421 56.3
BolC4t24246H Brassica oleracea HOM05D004546 ORTHO05D005419 4.5e-107 392.5 428 51.4
Gohir.A06G184800 Gossypium hirsutum HOM05D004546 ORTHO05D005419 5.9e-107 392.1 415 52.8
FAN14G0315 Fragaria x ananassa HOM05D004546 ORTHO05D005419 2.2e-106 390.2 410 53.4
SGA_v2.0_scaffold110G31325 Striga asiatica HOM05D004546 ORTHO05D005419 2.9e-106 389.8 422 53.6
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 3.8e-106 389.4 463 51.8
Medtr8g088840 Medicago truncatula HOM05D004546 ORTHO05D005419 8.5e-106 388.3 423 52.7
C03p25600 Brassica napus HOM05D004546 ORTHO05D005419 1.9e-105 387.1 426 51.6
arahy.Tifrunner.gnm1.ann1.SB4BQ5 Arachis hypogaea HOM05D004546 ORTHO05D005419 2.3e-103 380.2 419 50.1
BolC3t14948H Brassica oleracea HOM05D004546 ORTHO05D005419 2.3e-103 380.2 435 50.3
Ah.14g086060 Amaranthus hybridus HOM05D004546 ORTHO05D005419 3.0e-103 379.8 454 47.8
Thhalv10023463m.g Eutrema salsugineum HOM05D004546 ORTHO05D005419 3.0e-103 379.8 394 52.5
A03p21620 Brassica napus HOM05D004546 ORTHO05D005419 5.1e-103 379.0 435 49.9
BraA03t11397Z Brassica rapa HOM05D004546 ORTHO05D005419 5.1e-103 379.0 435 49.9
Cpa.g.sc8.264 Carica papaya HOM05D004546 ORTHO05D005419 3.3e-102 376.3 303 63.4
Ca_17808_v3 Cicer arietinum L. HOM05D004546 ORTHO05D005419 3.7e-101 372.9 377 56.5
C04p25630 Brassica napus HOM05D004546 ORTHO05D005419 1.8e-100 370.5 477 46.5
arahy.Tifrunner.gnm1.ann1.QA5S84 Arachis hypogaea HOM05D004546 ORTHO05D005419 2.4e-100 370.2 419 50.1
Gorai.010G224800 Gossypium raimondii HOM05D004546 ORTHO05D005419 1.2e-99 367.9 415 49.9
AUR62014224 Chenopodium quinoa HOM05D004546 ORTHO05D005419 4.5e-99 365.9 429 47.8
Psat7g062000 Pisum sativum HOM05D004546 ORTHO05D005419 5.9e-99 365.5 414 51.0
FvH4_7g06682 Fragaria vesca HOM05D004546 ORTHO05D005419 7.2e-97 358.6 417 47.2
FAN06G4932 Fragaria x ananassa HOM05D004546 ORTHO05D005419 2.1e-96 357.1 417 47.2
PGR042G1236 Punica granatum HOM05D004546 ORTHO05D005419 2.1e-96 357.1 418 47.8
TWI59G0103 Tripterygium wilfordii HOM05D004546 ORTHO05D005419 1.8e-95 354.0 418 48.8
Gohir.D07G234200 Gossypium hirsutum HOM05D004546 ORTHO05D005419 2.3e-95 353.6 463 45.4
Gohir.A07G227000 Gossypium hirsutum HOM05D004546 ORTHO05D005419 1.1e-94 351.3 415 47.7
AUR62041118 Chenopodium quinoa HOM05D004546 ORTHO05D005419 7.4e-94 348.6 413 47.0
Medtr4g049650 Medicago truncatula HOM05D004546 ORTHO05D005419 7.4e-94 348.6 395 51.1
Atru.chr13.2649 Acer truncatum HOM05D004546 ORTHO05D005419 1.4e-92 344.4 337 58.5
RcHm_v2.0_Chr1g0336301 Rosa chinensis HOM05D004546 ORTHO05D005419 6.9e-92 342.0 352 52.3
BcaC02g10598 Brassica carinata HOM05D004546 ORTHO05D005419 9.1e-92 341.7 444 45.7
CDE08G0494 Ceratophyllum demersum HOM05D004546 ORTHO05D005419 3.4e-91 339.7 382 49.7
Oeu033122.2 Olea europaea HOM05D004546 ORTHO05D005419 2.2e-90 337.0 247 68.0
Hund15499 Selenicereus undatus HOM05D004546 ORTHO05D005419 2.0e-86 323.9 324 53.7
Carub.0002s0419 Capsella rubella HOM05D004546 ORTHO05D005419 5.3e-84 315.8 438 43.6
COL.COLO4_10577 Corchorus olitorius HOM05D004546 ORTHO05D005419 4.5e-83 312.8 423 47.5
Rhsim09G0048900 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.6e-80 304.3 413 47.7
Nn1g08777 Nelumbo nucifera HOM05D004546 ORTHO05D005419 3.0e-79 300.1 329 54.7
TPR.G28353 Trifolium pratense HOM05D004546 ORTHO05D005419 7.5e-78 295.4 287 54.7
HPP92_000323 Vanilla planifolia HOM05D004546 ORTHO05D005419 1.8e-76 290.8 414 42.3
Medtr8g088800 Medicago truncatula HOM05D004546 ORTHO05D005419 3.2e-73 280.0 397 45.1
VMungo0251G0767 Vigna mungo HOM05D004546 ORTHO05D005419 1.2e-72 278.1 456 38.8
Lsat_1_v5_gn_8_80961 Lactuca sativa HOM05D004546 ORTHO05D005419 2.2e-69 267.3 230 62.2
FAN03G2280 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.1e-68 265.0 590 31.9
Os03g0577100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 3.2e-65 253.4 448 35.9
AL2G15450 Arabidopsis lyrata HOM05D004546 ORTHO05D005419 2.1e-64 250.8 288 51.7
Eucgr.L03482 Eucalyptus grandis HOM05D004546 ORTHO05D005419 2.8e-64 250.4 220 56.4
unitig_8.g2954 Utricularia gibba HOM05D004546 ORTHO05D005419 3.6e-64 250.0 417 40.0
TPR.G38758 Trifolium pratense HOM05D004546 ORTHO05D005419 3.4e-62 243.4 254 51.2
COL.COLO4_13071 Corchorus olitorius HOM05D004546 ORTHO05D005419 2.4e-60 237.3 206 55.3
Os08g0163100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 1.2e-59 235.0 448 33.7
MELO3C002916.2 Cucumis melo HOM05D004546 ORTHO05D005419 5.6e-57 226.1 201 66.2
ATR0177G064 Amborella trichopoda HOM05D004546 ORTHO05D005419 1.8e-52 211.1 339 37.8
TPR.G31804 Trifolium pratense HOM05D004546 ORTHO05D005419 1.2e-46 191.8 216 55.6
SEGI_32079 Sequoiadendron giganteum HOM05D004546 ORTHO05D005419 2.9e-45 187.2 402 33.8
Oeu027800.1 Olea europaea HOM05D004546 ORTHO05D005419 1.1e-44 185.3 161 65.2
C05p50930 Brassica napus HOM05D004546 ORTHO05D005419 7.0e-44 182.6 206 45.1
Aqoxy7G01614 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 2.5e-41 174.1 363 35.8
FAN10G1533 Fragaria x ananassa HOM05D004546 ORTHO05D005419 2.3e-39 167.5 417 30.9
Zm00001eb064460 Zea mays HOM05D004546 ORTHO05D005419 2.4e-36 157.5 409 29.3
Atru.chr4.610 Acer truncatum HOM05D004546 ORTHO05D005419 3.2e-36 157.1 204 41.7
TPR.G37878 Trifolium pratense HOM05D004546 ORTHO05D005419 2.7e-35 154.1 161 50.3
AagrBONN_evm.TU.Sc2ySwM_117.2656 Anthoceros agrestis HOM05D004546 ORTHO05D005419 6.4e-29 132.9 250 32.4
CAN.G1882.2 Capsicum annuum HOM05D004546 ORTHO05D005419 5.4e-28 129.8 115 65.2
Rhsim09G0049000 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.0e-26 125.6 76 75.0
Rhsim09G0048500 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.7e-26 124.8 427 31.1
RhsimUnG0234900 Rhododendron simsii HOM05D004546 ORTHO05D005419 5.1e-26 123.2 76 73.7
MD08G1232500 Malus domestica HOM05D004546 ORTHO05D005419 8.6e-26 122.5 99 56.6
CAN.G1882.3 Capsicum annuum HOM05D004546 ORTHO05D005419 3.3e-25 120.6 82 76.8
PSO210G1504 Papaver somniferum HOM05D004546 ORTHO05D005419 9.6e-25 119.0 130 53.8
TPR.G37996 Trifolium pratense HOM05D004546 ORTHO05D005419 1.6e-24 118.2 181 42.0
Hund15500 Selenicereus undatus HOM05D004546 ORTHO05D005419 1.7e-21 108.2 117 57.3
C05p50920 Brassica napus HOM05D004546 ORTHO05D005419 2.4e-20 104.4 136 48.5
TPR.G7268 Trifolium pratense HOM05D004546 ORTHO05D005419 1.2e-19 102.1 74 73.0
TPR.G18400 Trifolium pratense HOM05D004546 ORTHO05D005419 2.2e-13 81.3 66 65.2
Atru.chr4.605 Acer truncatum HOM05D005324 ORTHO05D001185 2.4e-12 77.8 77 57.1
MBI17_g42496_MAGBIO Magnolia biondii HOM05D004546 ORTHO05D005419 2.7e-11 74.3 103 35.9
Rhsim13G0125100 Rhododendron simsii HOM05D000017 ORTHO05D000013 7.9e-11 72.8 66 60.6
Pp3c12_6220 Physcomitrium patens HOM05D004546 ORTHO05D005419 6.7e-10 69.7 416 23.1
COL.COLO4_15711 Corchorus olitorius HOM05D004546 ORTHO05D005419 8.7e-10 69.3 65 58.5
Actinidia39037 Actinidia chinensis HOM05D004546 ORTHO05D005419 1.1e-09 68.9 84 46.4
SMO118G0303 Selaginella moellendorffii HOM05D044143 ORTHO05D050877 3.3e-09 67.4 206 31.1
MBI08_g15045_MAGBIO Magnolia biondii HOM05D007906 ORTHO05D010248 9.6e-09 65.9 97 41.2
Mapoly0004s0096 Marchantia polymorpha HOM05D004546 ORTHO05D005419 2.8e-08 64.3 424 21.9
SMO222G0005 Selaginella moellendorffii HOM05D044143 ORTHO05D050877 2.8e-08 64.3 241 28.6
MCO07G624 Micromonas commoda HOM05D004546 ORTHO05D005419 1.4e-07 62.0 130 27.7
PRCOL_00002550 Prasinoderma coloniale HOM05D004546 ORTHO05D005419 1.2e-06 58.9 181 23.8


User provided reference genes

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