Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 1.1e-159 566.6 284 100.0
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 2.0e-134 482.6 282 83.7
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 3.8e-133 478.4 282 82.3
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 9.4e-132 473.8 282 82.3
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 2.3e-130 469.2 281 79.7
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 3.0e-130 468.8 281 79.7
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 6.7e-130 467.6 282 80.1
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 1.1e-129 466.8 280 80.0
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 1.5e-129 466.5 282 80.5
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 1.5e-129 466.5 282 80.5
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 2.6e-129 465.7 282 80.1
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 3.7e-128 461.8 281 79.0
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 4.8e-128 461.5 281 79.0
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 1.4e-127 459.9 283 80.6
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 1.4e-127 459.9 283 80.6
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 1.4e-127 459.9 282 80.9
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 1.4e-127 459.9 282 79.8
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 1.5e-126 456.4 282 77.7
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 2.6e-126 455.7 281 78.3
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 3.5e-126 455.3 281 78.3
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 1.7e-125 453.0 282 79.1
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 5.0e-125 451.4 282 78.7
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 5.5e-124 448.0 282 77.7
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 5.5e-124 448.0 334 69.8
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 9.4e-124 447.2 264 82.6
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 1.6e-123 446.4 281 75.4
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 2.1e-123 446.0 282 76.6
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 4.7e-123 444.9 282 75.5
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 4.7e-123 444.9 282 77.0
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 1.8e-122 443.0 282 78.7
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 3.0e-122 442.2 282 77.3
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 4.0e-122 441.8 281 75.4
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 1.1e-121 440.3 280 77.9
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 2.0e-121 439.5 282 75.5
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 2.0e-121 439.5 282 78.0
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 3.3e-121 438.7 282 74.8
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 5.7e-121 438.0 280 77.1
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 5.7e-121 438.0 280 78.6
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 5.7e-121 438.0 282 76.2
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 1.3e-120 436.8 281 75.4
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.7e-120 436.4 280 77.9
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 2.2e-120 436.0 282 75.9
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 2.8e-120 435.6 282 75.9
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 2.8e-120 435.6 283 75.6
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 3.7e-120 435.3 282 74.8
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 3.7e-120 435.3 282 74.8
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 3.7e-120 435.3 280 76.4
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 4.8e-120 434.9 282 75.2
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 4.8e-120 434.9 281 75.4
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 6.3e-120 434.5 282 74.8
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 8.2e-120 434.1 280 75.7
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 1.1e-119 433.7 281 76.5
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 1.1e-119 433.7 282 74.5
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 1.4e-119 433.3 281 76.2
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 1.8e-119 433.0 301 71.4
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 2.4e-119 432.6 282 74.1
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 2.4e-119 432.6 282 73.8
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 2.4e-119 432.6 282 74.5
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 2.4e-119 432.6 282 74.5
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 3.1e-119 432.2 281 75.1
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 9.1e-119 430.6 280 76.8
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 1.2e-118 430.3 262 81.3
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 2.0e-118 429.5 282 74.5
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 2.0e-118 429.5 288 72.6
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 3.5e-118 428.7 282 74.5
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 1.0e-117 427.2 282 74.5
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 2.2e-117 426.0 282 73.4
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 1.1e-116 423.7 284 77.1
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 1.5e-116 423.3 280 75.4
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 2.5e-116 422.5 282 73.8
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 9.4e-116 420.6 270 76.3
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 2.7e-115 419.1 304 70.4
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 6.1e-115 417.9 282 73.0
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 4.4e-113 411.8 283 70.7
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 1.3e-112 410.2 358 62.0
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 2.0e-110 402.9 313 66.1
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.0e-109 400.6 282 71.3
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 1.2e-107 393.7 271 73.8
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 1.0e-106 390.6 281 68.3
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 8.8e-106 387.5 282 71.3
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 1.2e-105 387.1 282 69.1
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 2.0e-102 376.3 285 66.0
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 2.8e-99 365.9 263 71.1
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 4.0e-98 362.1 280 65.7
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 4.4e-97 358.6 268 69.4
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 8.3e-96 354.4 282 65.6
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 1.4e-95 353.6 281 66.2
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.3e-93 347.1 280 65.0
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 8.0e-91 337.8 283 58.7
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 3.1e-90 335.9 280 61.1
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 1.7e-88 330.1 186 87.1
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 3.7e-88 328.9 186 87.6
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.4e-87 327.0 225 70.7
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 1.9e-87 326.6 284 58.8
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 7.8e-86 321.2 185 86.5
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 1.5e-84 317.0 185 84.9
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 5.8e-81 305.1 165 92.7
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 9.8e-81 304.3 183 82.0
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 1.7e-80 303.5 185 81.6
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 7.1e-79 298.1 185 78.4
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 3.9e-77 292.4 185 78.9
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 5.6e-76 288.5 298 50.7
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 6.2e-75 285.0 185 75.7
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 4.1e-71 272.3 262 55.0
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 1.5e-68 263.8 286 49.3
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 1.5e-60 237.3 282 46.1
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 3.3e-60 236.1 136 84.6
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 6.4e-56 221.9 218 54.6
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 2.8e-51 206.5 166 65.1
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 9.0e-50 201.4 228 47.4
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 4.5e-49 199.1 133 70.7
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 1.7e-48 197.2 346 35.5
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 6.5e-40 168.7 159 57.2
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.9e-32 143.3 138 56.5
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 5.5e-31 139.0 273 32.6
Rhsim08G0085000 Rhododendron simsii HOM05D006412 ORTHO05D008025 7.2e-31 138.7 96 69.8
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 1.8e-29 134.0 146 51.4
SEGI_25003 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 9.7e-28 128.3 118 55.1
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 3.7e-27 126.3 67 89.6
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 5.9e-25 119.0 75 76.0
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 6.5e-24 115.5 73 75.3
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 1.9e-23 114.0 81 69.1
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 5.5e-23 112.5 95 64.2
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 2.0e-20 104.0 63 77.8
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 2.8e-19 100.1 195 34.9
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 1.1e-07 61.6 96 34.4
Pp3s32_101 Physcomitrium patens HOM05D005388 ORTHO05D006281 9.4e-07 58.5 127 30.7
BolC7t43649H Brassica oleracea HOM05D003894 ORTHO05D004584 1.6e-06 57.8 108 36.1
Gohir.A03G007600 Gossypium hirsutum HOM05D003894 ORTHO05D004584 1.6e-06 57.8 108 32.4
A06p45100 Brassica napus HOM05D003894 ORTHO05D004584 2.7e-06 57.0 88 37.5
BraA06t27379Z Brassica rapa HOM05D003894 ORTHO05D004584 2.7e-06 57.0 88 37.5
Gorai.003G172100 Gossypium raimondii HOM05D003894 ORTHO05D004584 2.7e-06 57.0 108 32.4
Psat2g176960 Pisum sativum HOM05D003894 ORTHO05D004584 2.7e-06 57.0 108 34.3
Ah.10g037930 Amaranthus hybridus HOM05D006412 ORTHO05D008025 3.6e-06 56.6 29 86.2
Ciclev10020835m.g Citrus clementina HOM05D003894 ORTHO05D004584 3.6e-06 56.6 75 38.7
FAN04G2823 Fragaria x ananassa HOM05D003894 ORTHO05D004584 4.7e-06 56.2 108 34.3
Aa31sc265G50 Aethionema arabicum HOM05D003894 ORTHO05D004584 6.1e-06 55.8 88 36.4
Eucgr.D02094 Eucalyptus grandis HOM05D003894 ORTHO05D004584 6.1e-06 55.8 88 36.4
Thhalv10000960m.g Eutrema salsugineum HOM05D003894 ORTHO05D004584 6.1e-06 55.8 88 36.4
Potri.003G078000 Populus trichocarpa HOM05D003894 ORTHO05D004584 6.1e-06 55.8 88 37.5
Sabra03G0048400 Salix brachista HOM05D003894 ORTHO05D004584 6.1e-06 55.8 88 37.5
Cre10.g430450 Chlamydomonas reinhardtii HOM05D003894 ORTHO05D004584 8.0e-06 55.5 86 38.4
PRCOL_00004292 Prasinoderma coloniale HOM05D003894 ORTHO05D004584 8.0e-06 55.5 102 33.3
PGR031G3663 Punica granatum HOM05D003894 ORTHO05D004584 8.0e-06 55.5 88 36.4


User provided reference genes

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