Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049071 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 9.1e-197 690.3 404 100.0
CSS0009679 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.6e-135 486.1 402 71.1
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.1e-101 374.4 409 59.2
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 2.0e-87 327.0 417 52.8
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 2.6e-87 326.6 419 53.0
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 5.3e-72 275.8 419 44.9
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.1e-56 224.9 412 44.9
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 4.5e-55 219.5 412 44.4
CSS0001570 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 9.8e-50 201.8 158 75.9
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 2.8e-44 183.7 417 37.4
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 2.6e-42 177.2 401 36.9
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 3.2e-40 170.2 419 37.0
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 3.5e-39 166.8 411 35.8
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 2.3e-38 164.1 411 35.5
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 2.6e-34 150.6 259 43.6
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 6.4e-33 146.0 419 34.8
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 2.4e-32 144.1 414 35.0
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 9.2e-32 142.1 406 35.0
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 8.6e-30 135.6 413 33.2
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 3.6e-28 130.2 419 33.9
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 6.2e-28 129.4 423 32.6
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 4.0e-27 126.7 414 32.1
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 6.8e-27 125.9 409 34.0
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 6.8e-27 125.9 414 32.9
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 8.9e-27 125.6 390 36.4
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 2.0e-26 124.4 415 32.0
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 7.5e-26 122.5 414 33.6
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 4.9e-25 119.8 408 34.1
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 2.4e-24 117.5 412 31.8
vmacro01916 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 4.1e-24 116.7 150 50.7
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 7.1e-24 115.9 426 32.4
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 1.2e-23 115.2 414 31.6
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.2e-23 115.2 414 31.6
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 3.5e-23 113.6 415 31.8
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 7.8e-23 112.5 285 35.4
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 2.5e-21 107.5 401 30.2
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 4.7e-20 103.2 408 31.1
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 1.4e-19 101.7 393 30.3
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 1.8e-19 101.3 399 28.8
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 3.1e-19 100.5 387 33.6
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 8.9e-19 99.0 407 30.0
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 5.8e-18 96.3 266 34.6
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 1.7e-17 94.7 335 28.7
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 2.9e-17 94.0 395 29.1
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 2.9e-17 94.0 421 28.7
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 3.8e-17 93.6 416 29.6
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 3.8e-17 93.6 400 30.5
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 3.8e-17 93.6 404 29.5
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 4.9e-17 93.2 252 31.7
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 1.4e-16 91.7 332 29.2
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 5.4e-16 89.7 382 31.2
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 1.2e-15 88.6 261 28.0
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 6.0e-15 86.3 363 32.8
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 6.0e-15 86.3 404 27.5
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 3.0e-14 84.0 260 33.5
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 6.6e-14 82.8 411 28.5
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 1.9e-13 81.3 297 30.3
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 2.5e-13 80.9 412 30.1
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 3.3e-13 80.5 292 30.1
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 7.3e-13 79.3 412 26.5
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 1.1e-11 75.5 367 27.0
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 1.4e-11 75.1 412 28.4
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 3.1e-11 73.9 374 28.3
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 3.4e-10 70.5 403 25.8
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 9.9e-10 68.9 401 26.9
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 9.9e-10 68.9 352 33.2
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 9.9e-10 68.9 55 60.0
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 4.9e-09 66.6 286 27.6
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 3.2e-08 63.9 410 26.1
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 3.2e-08 63.9 179 36.9
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 5.4e-08 63.2 39 76.9
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 5.4e-08 63.2 362 25.7
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 1.6e-07 61.6 407 26.5
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 1.6e-07 61.6 265 28.3
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 2.7e-07 60.8 329 25.5
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 2.7e-07 60.8 177 33.9
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 3.5e-07 60.5 299 27.1
Prupe.8G157000 Prunus persica HOM05D004882 ORTHO05D005551 4.6e-07 60.1 180 33.3
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 6.0e-07 59.7 177 33.3
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 7.8e-07 59.3 356 24.4
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 1.0e-06 58.9 60 56.7
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 1.0e-06 58.9 295 25.8
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 2.3e-06 57.8 313 29.1
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 3.0e-06 57.4 297 25.9
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 3.9e-06 57.0 155 35.5
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 3.9e-06 57.0 423 24.1
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 6.6e-06 56.2 296 25.0
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 8.7e-06 55.8 74 45.9


User provided reference genes

Program Settings