Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049043 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.3e-29 132.5 70 100.0
CSS0043065 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.2e-27 125.9 67 98.5
vmacro16727 Vaccinium macrocarpon HOM05D005391 ORTHO05D006694 9.7e-22 106.3 67 83.6
Dinv23158 Davidia involucrata HOM05D005391 ORTHO05D006694 3.7e-21 104.4 67 80.6
CSS0003205 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 4.5e-19 97.4 67 80.6
CSS0033680 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 4.5e-19 97.4 67 80.6
Actinidia36818 Actinidia chinensis HOM05D005391 ORTHO05D006694 1.7e-18 95.5 67 73.1
Cfa018784 Carpinus fangiana HOM05D005391 ORTHO05D006694 5.0e-18 94.0 67 71.6
Haze_07152 Corylus avellana HOM05D005391 ORTHO05D006694 1.9e-17 92.0 67 70.1
Thecc.03G130500 Theobroma cacao HOM05D005391 ORTHO05D006694 7.2e-17 90.1 67 70.1
Nn3g16438 Nelumbo nucifera HOM05D005391 ORTHO05D006694 9.4e-17 89.7 67 68.7
TWI23G0649 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 9.4e-17 89.7 67 68.7
CiPaw.12G044000 Carya illinoinensis HOM05D005391 ORTHO05D006694 1.2e-16 89.4 67 70.1
Manes.14G050400 Manihot esculenta HOM05D005391 ORTHO05D006694 2.7e-16 88.2 67 71.6
Rhsim12G0176000 Rhododendron simsii HOM05D005391 ORTHO05D006694 4.7e-16 87.4 70 70.0
Nn4g22289 Nelumbo nucifera HOM05D005391 ORTHO05D006694 6.1e-16 87.0 67 68.7
Ciclev10032864m.g Citrus clementina HOM05D005391 ORTHO05D006694 1.0e-15 86.3 67 65.7
CiPaw.11G006200 Carya illinoinensis HOM05D005391 ORTHO05D006694 1.8e-15 85.5 67 65.7
MD08G1006700 Malus domestica HOM05D005391 ORTHO05D006694 1.8e-15 85.5 64 68.8
PSO478G3696 Papaver somniferum HOM05D005391 ORTHO05D006694 1.8e-15 85.5 67 61.2
MBI07_g28244_MAGBIO Magnolia biondii HOM05D005391 ORTHO05D006694 3.0e-15 84.7 65 66.2
PSO017G3900 Papaver somniferum HOM05D005391 ORTHO05D006694 3.0e-15 84.7 67 59.7
Prupe.1G358600 Prunus persica HOM05D005391 ORTHO05D006694 3.0e-15 84.7 63 68.3
TAR371G0831 Trochodendron aralioides HOM05D005391 ORTHO05D006694 3.0e-15 84.7 67 64.2
Duzib205G0229 Durio zibethinus HOM05D005391 ORTHO05D006694 5.2e-15 84.0 67 65.7
Atru.chr6.1808 Acer truncatum HOM05D005391 ORTHO05D006694 6.7e-15 83.6 67 62.7
CANSAT80G1472 Cannabis sativa HOM05D005391 ORTHO05D006694 1.1e-14 82.8 63 68.3
MSTRG.25825 Avicennia marina HOM05D005391 ORTHO05D006694 1.5e-14 82.4 67 68.7
Gohir.D07G055100 Gossypium hirsutum HOM05D005391 ORTHO05D006694 1.5e-14 82.4 67 67.2
Gorai.001G058300 Gossypium raimondii HOM05D005391 ORTHO05D006694 1.5e-14 82.4 67 67.2
MD15G1005900 Malus domestica HOM05D005391 ORTHO05D006694 1.5e-14 82.4 62 69.4
DCAR_016386 Daucus carota HOM05D005391 ORTHO05D006694 2.0e-14 82.0 69 68.1
Gohir.A07G050600 Gossypium hirsutum HOM05D005391 ORTHO05D006694 2.0e-14 82.0 67 67.2
Lalb_Chr23g0273681 Lupinus albus HOM05D005391 ORTHO05D006694 2.6e-14 81.6 67 65.7
TAR629G0488 Trochodendron aralioides HOM05D005391 ORTHO05D006694 2.6e-14 81.6 67 64.2
TWI14G1436 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 5.7e-14 80.5 67 61.2
Cpa.g.sc13.100 Carica papaya HOM05D005391 ORTHO05D006694 1.3e-13 79.3 67 64.2
MELO3C026202.2 Cucumis melo HOM05D005391 ORTHO05D006694 1.3e-13 79.3 67 64.2
COL.COLO4_28143 Corchorus olitorius HOM05D005391 ORTHO05D006694 1.7e-13 79.0 67 62.7
CsaV3_1G000500 Cucumis sativus L. HOM05D005391 ORTHO05D006694 1.7e-13 79.0 67 64.2
Oeu009657.1 Olea europaea HOM05D005391 ORTHO05D006694 1.7e-13 79.0 56 69.6
SalBow8G3527 Salvia bowleyana HOM05D005391 ORTHO05D006694 1.7e-13 79.0 66 62.1
AUR62002017 Chenopodium quinoa HOM05D005391 ORTHO05D006694 2.2e-13 78.6 54 72.2
AUR62003784 Chenopodium quinoa HOM05D005391 ORTHO05D006694 2.8e-13 78.2 54 72.2
Solyc08g006670.3 Solanum lycopersicum HOM05D005391 ORTHO05D006694 2.8e-13 78.2 67 64.2
Sopen08g002620 Solanum pennellii HOM05D005391 ORTHO05D006694 2.8e-13 78.2 67 64.2
PGSC0003DMG400026284 Solanum tuberosum HOM05D005391 ORTHO05D006694 2.8e-13 78.2 67 64.2
ClCG06G017970 Citrullus lanatus HOM05D005391 ORTHO05D006694 3.7e-13 77.8 69 62.3
Glyma.04G196600 Glycine max HOM05D005391 ORTHO05D006694 3.7e-13 77.8 66 65.2
Nitab4.5_0000264g0120 Nicotiana tabacum HOM05D005391 ORTHO05D006694 3.7e-13 77.8 67 62.7
Nitab4.5_0001362g0010 Nicotiana tabacum HOM05D005391 ORTHO05D006694 4.8e-13 77.4 60 66.7
Peaxi162Scf00045g01932 Petunia axillaris HOM05D005391 ORTHO05D006694 6.3e-13 77.0 67 62.7
GSVIVG01008565001 Vitis vinifera HOM05D005391 ORTHO05D006694 6.3e-13 77.0 46 82.6
arahy.Tifrunner.gnm1.ann1.3A01UJ Arachis hypogaea HOM05D005391 ORTHO05D006694 8.2e-13 76.6 67 62.7
arahy.Tifrunner.gnm1.ann1.CP8X4X Arachis hypogaea HOM05D005391 ORTHO05D006694 8.2e-13 76.6 67 62.7
arahy.Tifrunner.gnm1.ann1.HT4698 Arachis hypogaea HOM05D005391 ORTHO05D006694 8.2e-13 76.6 67 62.7
arahy.Tifrunner.gnm1.ann1.S11VKX Arachis hypogaea HOM05D005391 ORTHO05D006694 8.2e-13 76.6 67 62.7
Potri.015G097800 Populus trichocarpa HOM05D005391 ORTHO05D006694 8.2e-13 76.6 55 67.3
RcHm_v2.0_Chr6g0303761 Rosa chinensis HOM05D005391 ORTHO05D006694 8.2e-13 76.6 68 55.9
QL10p002677 Quercus lobata HOM05D005391 ORTHO05D006694 1.1e-12 76.3 66 62.1
Ah.03g143420 Amaranthus hybridus HOM05D005391 ORTHO05D006694 1.4e-12 75.9 56 64.3
ATR0171G017 Amborella trichopoda HOM05D005391 ORTHO05D006694 1.4e-12 75.9 61 62.3
Cc08_g07550 Coffea canephora HOM05D005391 ORTHO05D006694 1.4e-12 75.9 59 66.1
Glyma.06G169200 Glycine max HOM05D005391 ORTHO05D006694 1.4e-12 75.9 57 70.2
Lj5A95T81 Lonicera japonica HOM05D005391 ORTHO05D006694 1.8e-12 75.5 68 57.4
EL10Ac6g15093 Beta vulgaris HOM05D005391 ORTHO05D006694 2.4e-12 75.1 55 65.5
Phvul.009G165600 Phaseolus vulgaris HOM05D005391 ORTHO05D006694 2.4e-12 75.1 67 62.7
unitig_32.g10935 Utricularia gibba HOM05D005391 ORTHO05D006694 2.4e-12 75.1 70 58.6
FvH4_2g37750 Fragaria vesca HOM05D005391 ORTHO05D006694 3.1e-12 74.7 68 55.9
FAN27G0224 Fragaria x ananassa HOM05D005391 ORTHO05D006694 3.1e-12 74.7 68 55.9
DCAR_021623 Daucus carota HOM05D005391 ORTHO05D006694 5.3e-12 73.9 65 56.9
Sabra12G0072400 Salix brachista HOM05D005391 ORTHO05D006694 5.3e-12 73.9 55 69.1
TPR.G14215 Trifolium pratense HOM05D005391 ORTHO05D006694 5.3e-12 73.9 67 59.7
Potri.012G099200 Populus trichocarpa HOM05D005391 ORTHO05D006694 7.0e-12 73.6 55 69.1
Hund08624 Selenicereus undatus HOM05D005391 ORTHO05D006694 7.0e-12 73.6 56 66.1
Sed0002904 Sechium edule HOM05D005391 ORTHO05D006694 1.2e-11 72.8 67 58.2
SGA_v2.0_scaffold169G38603 Striga asiatica HOM05D005391 ORTHO05D006694 1.2e-11 72.8 66 56.1
Aqoxy3G00618 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 1.6e-11 72.4 66 56.1
Migut.E01449 Erythranthe guttata HOM05D005391 ORTHO05D006694 1.6e-11 72.4 58 58.6
FAN20G0870 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.6e-11 72.4 68 54.4
Ca_16053_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 2.6e-11 71.6 58 63.8
Aqoxy3G01572 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 3.5e-11 71.2 66 54.5
HanXRQChr09g0273301 Helianthus annuus HOM05D005391 ORTHO05D006694 3.5e-11 71.2 67 59.7
Psat5g051960 Pisum sativum HOM05D005391 ORTHO05D006694 4.5e-11 70.9 56 62.5
FAN15G0439 Fragaria x ananassa HOM05D005391 ORTHO05D006694 5.9e-11 70.5 68 52.9
FAN26G2573 Fragaria x ananassa HOM05D005391 ORTHO05D006694 5.9e-11 70.5 56 58.9
Zm00001eb421130 Zea mays HOM05D005391 ORTHO05D006694 5.9e-11 70.5 69 53.6
Lj1g0005006 Lotus japonicus HOM05D005391 ORTHO05D006694 1.3e-10 69.3 67 58.2
Medtr3g099130 Medicago truncatula HOM05D005391 ORTHO05D006694 2.2e-10 68.6 67 56.7
ECA232G1626 Erigeron canadensis HOM05D005391 ORTHO05D006694 2.9e-10 68.2 67 59.7
THA.LOC104798944 Tarenaya hassleriana HOM05D005391 ORTHO05D006694 6.5e-10 67.0 59 55.9
Sabra15G0118500 Salix brachista HOM05D005391 ORTHO05D006694 1.1e-09 66.2 68 55.9
Lsat_1_v5_gn_4_81240 Lactuca sativa HOM05D005391 ORTHO05D006694 3.2e-09 64.7 67 53.7
BcaC04g23332 Brassica carinata HOM05D005391 ORTHO05D006694 9.4e-09 63.2 47 63.8
A09p08280 Brassica napus HOM05D005391 ORTHO05D006694 9.4e-09 63.2 47 63.8
C09p09360 Brassica napus HOM05D005391 ORTHO05D006694 9.4e-09 63.2 47 63.8
BolC9t53848H Brassica oleracea HOM05D005391 ORTHO05D006694 9.4e-09 63.2 47 63.8
BraA09t36478Z Brassica rapa HOM05D005391 ORTHO05D006694 9.4e-09 63.2 47 63.8
AL8G40540 Arabidopsis lyrata HOM05D005391 ORTHO05D006694 1.2e-08 62.8 53 58.5
AT5G63480 Arabidopsis thaliana HOM05D005391 ORTHO05D006694 1.2e-08 62.8 53 58.5
CARHR277330 Cardamine hirsuta HOM05D005391 ORTHO05D006694 1.2e-08 62.8 62 51.6
Aa31LG1G18560 Aethionema arabicum HOM05D005391 ORTHO05D006694 1.6e-08 62.4 62 51.6
Ca_01190_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 1.6e-08 62.4 58 55.2
C03p62960 Brassica napus HOM05D005391 ORTHO05D006694 2.1e-08 62.0 50 58.0
BolC3t18550H Brassica oleracea HOM05D005391 ORTHO05D006694 2.1e-08 62.0 50 58.0
Sp2g26560 Schrenkiella parvula HOM05D005391 ORTHO05D006694 3.6e-08 61.2 62 50.0
SEGI_01116 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 4.7e-08 60.8 57 52.6
CDE10G0912 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 8.0e-08 60.1 66 50.0
CDE04G2377 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 1.4e-07 59.3 64 50.0
Thhalv10004987m.g Eutrema salsugineum HOM05D005391 ORTHO05D006694 1.4e-07 59.3 66 48.5
A06p30110 Brassica napus HOM05D005391 ORTHO05D006694 1.8e-07 58.9 59 49.2
BraA06t25962Z Brassica rapa HOM05D005391 ORTHO05D006694 1.8e-07 58.9 59 49.2
BcaB02g09758 Brassica carinata HOM05D005391 ORTHO05D006694 8.8e-07 56.6 59 47.5
BcaB04g19920 Brassica carinata HOM05D005391 ORTHO05D006694 1.2e-06 56.2 67 46.3
Carub.0008s2418 Capsella rubella HOM05D005391 ORTHO05D006694 1.5e-06 55.8 59 49.2


User provided reference genes

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