Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049041 Camellia sinensis var. sinensis HOM05D007025 ORTHO05D008862 5.7e-42 173.7 81 100.0
Thecc.09G323800 Theobroma cacao HOM05D007025 ORTHO05D008862 2.3e-35 151.8 81 85.2
TAR374G1462 Trochodendron aralioides HOM05D007025 ORTHO05D008862 4.0e-35 151.0 81 84.0
vmacro00530 Vaccinium macrocarpon HOM05D007025 ORTHO05D008862 4.0e-35 151.0 81 86.4
CiPaw.09G091100 Carya illinoinensis HOM05D007025 ORTHO05D008862 5.2e-35 150.6 81 85.2
Rhsim09G0044100 Rhododendron simsii HOM05D007025 ORTHO05D008862 6.8e-35 150.2 81 84.0
Ciclev10003169m.g Citrus clementina HOM05D007025 ORTHO05D008862 1.5e-34 149.1 81 85.2
CiPaw.13G095900 Carya illinoinensis HOM05D007025 ORTHO05D008862 2.6e-34 148.3 81 84.0
Sed0024062 Sechium edule HOM05D007025 ORTHO05D008862 2.6e-34 148.3 81 80.2
GSVIVG01024988001 Vitis vinifera HOM05D007025 ORTHO05D008862 2.6e-34 148.3 81 81.5
CsaV3_6G031770 Cucumis sativus L. HOM05D007025 ORTHO05D008862 7.5e-34 146.7 81 79.0
QL10p005425 Quercus lobata HOM05D007025 ORTHO05D008862 1.3e-33 146.0 80 82.5
Duzib168G1407 Durio zibethinus HOM05D007025 ORTHO05D008862 1.7e-33 145.6 81 84.0
Manes.04G033800 Manihot esculenta HOM05D007025 ORTHO05D008862 2.2e-33 145.2 81 82.7
PGR102G0249 Punica granatum HOM05D007025 ORTHO05D008862 2.8e-33 144.8 81 80.2
CANSAT54G1063 Cannabis sativa HOM05D007025 ORTHO05D008862 3.7e-33 144.4 81 82.7
MELO3C026555.2 Cucumis melo HOM05D007025 ORTHO05D008862 3.7e-33 144.4 81 79.0
CiPaw.14G069900 Carya illinoinensis HOM05D007025 ORTHO05D008862 4.9e-33 144.1 81 80.2
ClCG08G009640 Citrullus lanatus HOM05D007025 ORTHO05D008862 4.9e-33 144.1 81 75.3
Hma1.2p1_1888F.1_g306550 Hydrangea macrophylla HOM05D007025 ORTHO05D008862 4.9e-33 144.1 81 80.2
Gohir.A03G041000 Gossypium hirsutum HOM05D007025 ORTHO05D008862 1.1e-32 142.9 81 80.2
Gohir.D03G127100 Gossypium hirsutum HOM05D007025 ORTHO05D008862 1.8e-32 142.1 81 80.2
Gorai.003G133500 Gossypium raimondii HOM05D007025 ORTHO05D008862 1.8e-32 142.1 81 80.2
Eucgr.J02059 Eucalyptus grandis HOM05D007025 ORTHO05D008862 2.4e-32 141.7 81 80.2
Peaxi162Scf00406g00059 Petunia axillaris HOM05D007025 ORTHO05D008862 2.4e-32 141.7 81 77.8
Nn5g26960 Nelumbo nucifera HOM05D007025 ORTHO05D008862 4.1e-32 141.0 82 80.5
Nitab4.5_0004078g0030 Nicotiana tabacum HOM05D007025 ORTHO05D008862 4.1e-32 141.0 81 77.8
Nitab4.5_0001800g0060 Nicotiana tabacum HOM05D007025 ORTHO05D008862 5.4e-32 140.6 81 77.8
CAN.G764.4 Capsicum annuum HOM05D007025 ORTHO05D008862 7.0e-32 140.2 81 77.8
QL06p002232 Quercus lobata HOM05D007025 ORTHO05D008862 7.0e-32 140.2 80 78.8
Aqoxy1G00724 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 1.6e-31 139.0 81 75.3
Solyc11g066070.2 Solanum lycopersicum HOM05D007025 ORTHO05D008862 1.6e-31 139.0 81 76.5
Sopen11g025810 Solanum pennellii HOM05D007025 ORTHO05D008862 1.6e-31 139.0 81 76.5
PGSC0003DMG400000442 Solanum tuberosum HOM05D007025 ORTHO05D008862 1.6e-31 139.0 81 76.5
TWI79G0521 Tripterygium wilfordii HOM05D007025 ORTHO05D008862 1.6e-31 139.0 81 75.3
COL.COLO4_20470 Corchorus olitorius HOM05D007025 ORTHO05D008862 3.5e-31 137.9 81 76.5
unitig_749.g14331 Utricularia gibba HOM05D007025 ORTHO05D008862 3.5e-31 137.9 81 74.1
Solyc06g076010.3 Solanum lycopersicum HOM05D007025 ORTHO05D008862 4.5e-31 137.5 81 77.8
Sopen06g032420 Solanum pennellii HOM05D007025 ORTHO05D008862 4.5e-31 137.5 81 77.8
Aqoxy7G01971 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 7.8e-31 136.7 81 74.1
Haze_24077 Corylus avellana HOM05D007025 ORTHO05D008862 1.0e-30 136.3 80 80.0
Lsat_1_v5_gn_5_79400 Lactuca sativa HOM05D007025 ORTHO05D008862 1.0e-30 136.3 81 74.1
EL10Ac7g15997 Beta vulgaris HOM05D007025 ORTHO05D008862 1.3e-30 136.0 81 76.5
Cfa003375 Carpinus fangiana HOM05D007025 ORTHO05D008862 1.7e-30 135.6 81 80.2
Lsat_1_v5_gn_2_83821 Lactuca sativa HOM05D007025 ORTHO05D008862 2.9e-30 134.8 81 72.8
Prupe.6G079900 Prunus persica HOM05D007025 ORTHO05D008862 2.9e-30 134.8 81 72.8
Cpa.g.sc840.2 Carica papaya HOM05D007025 ORTHO05D008862 6.6e-30 133.7 81 74.1
Migut.C01196 Erythranthe guttata HOM05D007025 ORTHO05D008862 1.1e-29 132.9 81 77.8
Cc01_g12710 Coffea canephora HOM05D007025 ORTHO05D008862 2.5e-29 131.7 81 72.8
Hund04979 Selenicereus undatus HOM05D007025 ORTHO05D008862 2.5e-29 131.7 81 75.3
arahy.Tifrunner.gnm1.ann1.XVFR0N Arachis hypogaea HOM05D007025 ORTHO05D008862 5.6e-29 130.6 81 70.4
FvH4_3g35770 Fragaria vesca HOM05D007025 ORTHO05D008862 5.6e-29 130.6 81 75.3
FAN11G3513 Fragaria x ananassa HOM05D007025 ORTHO05D008862 5.6e-29 130.6 81 75.3
FAN16G3493 Fragaria x ananassa HOM05D007025 ORTHO05D008862 5.6e-29 130.6 81 75.3
FAN25G2181 Fragaria x ananassa HOM05D007025 ORTHO05D008862 5.6e-29 130.6 81 75.3
THA.LOC104810785 Tarenaya hassleriana HOM05D007025 ORTHO05D008862 5.6e-29 130.6 81 71.6
Carub.0001s3607 Capsella rubella HOM05D007025 ORTHO05D008862 1.2e-28 129.4 81 69.1
arahy.Tifrunner.gnm1.ann1.UND1EB Arachis hypogaea HOM05D007025 ORTHO05D008862 2.1e-28 128.6 81 69.1
Atru.chr3.3859 Acer truncatum HOM05D007025 ORTHO05D008862 2.8e-28 128.3 81 72.8
FAN21G1635 Fragaria x ananassa HOM05D007025 ORTHO05D008862 3.6e-28 127.9 81 74.1
Aa31sc152G30 Aethionema arabicum HOM05D007025 ORTHO05D008862 4.7e-28 127.5 81 71.6
RcHm_v2.0_Chr5g0006711 Rosa chinensis HOM05D007025 ORTHO05D008862 6.1e-28 127.1 81 72.8
RcHm_v2.0_Chr5g0063941 Rosa chinensis HOM05D007025 ORTHO05D008862 6.1e-28 127.1 81 72.8
SGA_v2.0_scaffold118G32439 Striga asiatica HOM05D007025 ORTHO05D008862 6.1e-28 127.1 82 72.0
PSO384G2653 Papaver somniferum HOM05D007025 ORTHO05D008862 1.0e-27 126.3 81 67.9
ATR0800G159 Amborella trichopoda HOM05D007025 ORTHO05D008862 1.8e-27 125.6 79 72.2
ECA238G2407 Erigeron canadensis HOM05D007025 ORTHO05D008862 3.0e-27 124.8 81 66.7
AL1G53430 Arabidopsis lyrata HOM05D007025 ORTHO05D008862 4.0e-27 124.4 81 66.7
AT1G47278 Arabidopsis thaliana HOM05D007025 ORTHO05D008862 4.0e-27 124.4 81 66.7
Glyma.08G088800 Glycine max HOM05D007025 ORTHO05D008862 4.0e-27 124.4 81 67.9
CARHR036850 Cardamine hirsuta HOM05D007025 ORTHO05D008862 5.2e-27 124.0 82 69.5
Glyma.05G134100 Glycine max HOM05D007025 ORTHO05D008862 8.9e-27 123.2 81 66.7
Phvul.002G188200 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 1.2e-26 122.9 81 67.9
Lalb_Chr12g0209181 Lupinus albus HOM05D007025 ORTHO05D008862 1.5e-26 122.5 81 66.7
Lalb_Chr12g0209151 Lupinus albus HOM05D007025 ORTHO05D008862 1.7e-25 119.0 81 65.4
Phvul.007G101100 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 1.7e-25 119.0 81 66.7
Thhalv10011908m.g Eutrema salsugineum HOM05D007025 ORTHO05D008862 6.4e-25 117.1 81 65.4
Medtr4g094750 Medicago truncatula HOM05D007025 ORTHO05D008862 8.3e-25 116.7 81 61.7
Psat7g087480 Pisum sativum HOM05D007025 ORTHO05D008862 8.3e-25 116.7 81 61.7
Sp1g34420 Schrenkiella parvula HOM05D007025 ORTHO05D008862 1.1e-24 116.3 81 66.7
BcaC07g37223 Brassica carinata HOM05D007025 ORTHO05D008862 1.4e-24 115.9 81 65.4
A08p05760 Brassica napus HOM05D007025 ORTHO05D008862 1.4e-24 115.9 81 65.4
C08p06430 Brassica napus HOM05D007025 ORTHO05D008862 1.4e-24 115.9 81 65.4
BraA08t32579Z Brassica rapa HOM05D007025 ORTHO05D008862 1.4e-24 115.9 81 65.4
Lj1g0011371 Lotus japonicus HOM05D007025 ORTHO05D008862 1.4e-24 115.9 81 64.2
Lj4g0013158 Lotus japonicus HOM05D007025 ORTHO05D008862 1.4e-24 115.9 81 64.2
BcaB04g17532 Brassica carinata HOM05D007025 ORTHO05D008862 4.1e-24 114.4 81 64.2
CDE11G0504 Ceratophyllum demersum HOM05D007025 ORTHO05D008862 4.1e-24 114.4 81 65.4
SHI05954 Sapria himalayana HOM05D007025 ORTHO05D008862 5.9e-23 110.5 78 59.0
Lj1A680T12 Lonicera japonica HOM05D007025 ORTHO05D008862 1.3e-22 109.4 59 83.1
SalBow5G5439 Salvia bowleyana HOM05D007025 ORTHO05D008862 1.3e-22 109.4 76 64.5
Os03g0276700 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 6.6e-22 107.1 79 62.0
TPR.G23830 Trifolium pratense HOM05D007025 ORTHO05D008862 8.6e-22 106.7 79 58.2
Os08g0422300 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 1.9e-21 105.5 79 62.0
MBI05_g06554_MAGBIO Magnolia biondii HOM05D007025 ORTHO05D008862 3.6e-20 101.3 72 61.1
Potri.009G029400 Populus trichocarpa HOM05D007025 ORTHO05D008862 8.0e-20 100.1 81 58.0
PGSC0003DMG400030317 Solanum tuberosum HOM05D007025 ORTHO05D008862 8.0e-20 100.1 57 75.4
unitig_26.g9279 Utricularia gibba HOM05D007025 ORTHO05D008862 2.0e-18 95.5 57 70.2
HanXRQChr14g0439311 Helianthus annuus HOM05D007025 ORTHO05D008862 1.4e-16 89.4 57 64.9
FAN24G0628 Fragaria x ananassa HOM05D007025 ORTHO05D008862 7.0e-16 87.0 63 65.1
MD11G1111500 Malus domestica HOM05D007025 ORTHO05D008862 7.0e-16 87.0 59 67.8
MD02G1271300 Malus domestica HOM05D007025 ORTHO05D008862 2.7e-15 85.1 59 66.1
BolC8t47490H Brassica oleracea HOM05D007025 ORTHO05D008862 3.5e-15 84.7 57 63.2
AUR62001808 Chenopodium quinoa HOM05D002150 ORTHO05D002191 6.6e-14 80.5 47 74.5
AUR62009594 Chenopodium quinoa HOM05D007025 ORTHO05D002191 6.6e-14 80.5 47 74.5
COL.COLO4_18491 Corchorus olitorius HOM05D007025 ORTHO05D008862 2.5e-13 78.6 77 57.1
Mapoly0032s0020 Marchantia polymorpha HOM05D007025 ORTHO05D008862 3.3e-13 78.2 80 46.2
AagrBONN_evm.TU.Sc2ySwM_344.5329 Anthoceros agrestis HOM05D007025 ORTHO05D008862 1.4e-11 72.8 77 45.5
Pp3c21_6850 Physcomitrium patens HOM05D007025 ORTHO05D008862 5.2e-11 70.9 80 41.2
SGA_v2.0_scaffold24G10508 Striga asiatica HOM05D007025 ORTHO05D008862 5.2e-11 70.9 41 73.2
SEGI_34612 Sequoiadendron giganteum HOM05D007025 ORTHO05D008862 4.4e-10 67.8 43 60.5
MD02G1271100 Malus domestica HOM05D007025 ORTHO05D008862 5.8e-10 67.4 46 63.0
FvH4_2g11050 Fragaria vesca HOM05D007025 ORTHO05D008862 1.1e-08 63.2 41 65.9


User provided reference genes

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