Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049023 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 4.3e-124 448.0 224 100.0
Rhsim09G0131400 Rhododendron simsii HOM05D005279 ORTHO05D006757 6.2e-62 241.5 232 59.1
Dinv09865 Davidia involucrata HOM05D005279 ORTHO05D006757 2.6e-60 236.1 233 54.1
vmacro10395 Vaccinium macrocarpon HOM05D005279 ORTHO05D006757 4.9e-59 231.9 234 59.4
Actinidia38912 Actinidia chinensis HOM05D005279 ORTHO05D006757 1.6e-57 226.9 233 54.5
TAR633G0866 Trochodendron aralioides HOM05D005279 ORTHO05D006757 1.4e-42 177.2 225 44.4
Ciclev10011262m.g Citrus clementina HOM05D005279 ORTHO05D006757 1.6e-41 173.7 231 45.5
MD04G1241700 Malus domestica HOM05D005279 ORTHO05D006757 3.0e-40 169.5 227 44.9
Cc09_g03410 Coffea canephora HOM05D005279 ORTHO05D006757 1.5e-39 167.2 224 42.0
GSVIVG01019132001 Vitis vinifera HOM05D005279 ORTHO05D006757 1.5e-39 167.2 210 48.1
Atru.chr12.2109 Acer truncatum HOM05D005279 ORTHO05D006757 3.3e-39 166.0 228 42.5
Nn1g08317 Nelumbo nucifera HOM05D005279 ORTHO05D006757 1.3e-38 164.1 224 44.2
MD12G1258400 Malus domestica HOM05D005279 ORTHO05D006757 8.1e-38 161.4 228 42.5
Haze_04527 Corylus avellana HOM05D005279 ORTHO05D006757 5.3e-37 158.7 226 42.5
Duzib177G0028 Durio zibethinus HOM05D005279 ORTHO05D006757 7.6e-36 154.8 232 43.5
Potri.013G087400 Populus trichocarpa HOM05D005279 ORTHO05D006757 6.4e-35 151.8 231 39.0
Thecc.05G206100 Theobroma cacao HOM05D005279 ORTHO05D006757 6.4e-35 151.8 233 41.6
Sopen04g022730 Solanum pennellii HOM05D005279 ORTHO05D006757 1.4e-34 150.6 217 39.2
Nitab4.5_0000276g0070 Nicotiana tabacum HOM05D005279 ORTHO05D006757 2.4e-34 149.8 221 39.8
RcHm_v2.0_Chr3g0448231 Rosa chinensis HOM05D005279 ORTHO05D006757 2.4e-34 149.8 228 41.2
Solyc04g051310.4 Solanum lycopersicum HOM05D005279 ORTHO05D006757 3.2e-34 149.4 217 39.2
Nitab4.5_0000456g0100 Nicotiana tabacum HOM05D005279 ORTHO05D006757 4.2e-34 149.1 220 40.5
MSTRG.320 Avicennia marina HOM05D005279 ORTHO05D006757 1.6e-33 147.1 230 39.6
Manes.09G184200 Manihot esculenta HOM05D005279 ORTHO05D006757 3.5e-33 146.0 233 40.3
Peaxi162Scf00994g00010 Petunia axillaris HOM05D005279 ORTHO05D006757 3.5e-33 146.0 223 39.9
PGSC0003DMG401016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 6.0e-33 145.2 217 37.3
TWI23G0564 Tripterygium wilfordii HOM05D005279 ORTHO05D006757 6.0e-33 145.2 230 37.8
COL.COLO4_19830 Corchorus olitorius HOM05D005279 ORTHO05D006757 2.3e-32 143.3 237 39.2
Lj1g0001090 Lotus japonicus HOM05D005279 ORTHO05D006757 8.7e-32 141.4 219 39.3
Duzib128G1767 Durio zibethinus HOM05D005279 ORTHO05D006757 2.5e-31 139.8 226 40.7
ECA232G1216 Erigeron canadensis HOM05D005279 ORTHO05D006757 2.5e-31 139.8 225 39.1
FvH4_6g00750 Fragaria vesca HOM05D005279 ORTHO05D006757 1.6e-30 137.1 226 39.4
FAN14G2044 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.6e-30 137.1 226 39.4
arahy.Tifrunner.gnm1.ann1.X9YPPN Arachis hypogaea HOM05D005279 ORTHO05D006757 2.8e-30 136.3 215 38.6
FAN05G0195 Fragaria x ananassa HOM05D005279 ORTHO05D006757 2.8e-30 136.3 226 38.5
Glyma.18G240300 Glycine max HOM05D005279 ORTHO05D006757 3.7e-30 136.0 218 39.9
TPR.G32005 Trifolium pratense HOM05D005279 ORTHO05D006757 6.2e-30 135.2 216 38.9
Glyma.09G252300 Glycine max HOM05D005279 ORTHO05D006757 8.1e-30 134.8 221 37.6
Phvul.008G055900 Phaseolus vulgaris HOM05D005279 ORTHO05D006757 1.1e-29 134.4 208 38.0
CiPaw.08G116500 Carya illinoinensis HOM05D005279 ORTHO05D006757 1.4e-29 134.0 215 40.5
FAN09G4620 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.8e-29 133.7 228 38.2
Sabra13G0070000 Salix brachista HOM05D005279 ORTHO05D006757 1.8e-29 133.7 220 36.8
arahy.Tifrunner.gnm1.ann1.GMHU8S Arachis hypogaea HOM05D005279 ORTHO05D006757 6.9e-29 131.7 216 38.0
HanXRQChr11g0323931 Helianthus annuus HOM05D005279 ORTHO05D006757 6.9e-29 131.7 215 38.6
Lalb_Chr19g0126771 Lupinus albus HOM05D005279 ORTHO05D006757 6.9e-29 131.7 221 38.5
Psat3g104240 Pisum sativum HOM05D005279 ORTHO05D006757 1.2e-28 131.0 216 37.5
Medtr7g079510 Medicago truncatula HOM05D005279 ORTHO05D006757 3.4e-28 129.4 216 39.8
Sed0005684 Sechium edule HOM05D005279 ORTHO05D006757 1.0e-27 127.9 223 36.3
VMungo1383G2490 Vigna mungo HOM05D005279 ORTHO05D006757 1.0e-27 127.9 216 34.3
CsaV3_2G009490 Cucumis sativus L. HOM05D005279 ORTHO05D006757 2.9e-27 126.3 216 37.5
DCAR_023849 Daucus carota HOM05D005279 ORTHO05D006757 1.1e-26 124.4 216 36.6
Eucgr.H01378 Eucalyptus grandis HOM05D005279 ORTHO05D006757 1.1e-26 124.4 234 34.2
Lsat_1_v5_gn_9_48740 Lactuca sativa HOM05D005279 ORTHO05D006757 1.4e-26 124.0 216 38.9
Aqoxy2G03953 Aquilegia oxysepala HOM05D005279 ORTHO05D006757 5.5e-26 122.1 223 33.6
PSO675G1387 Papaver somniferum HOM05D005279 ORTHO05D006757 1.6e-25 120.6 211 39.8
MELO3C008759.2 Cucumis melo HOM05D005279 ORTHO05D006757 2.1e-25 120.2 223 35.0
Ca_07964_v3 Cicer arietinum L. HOM05D005279 ORTHO05D006757 4.6e-25 119.0 220 35.5
Migut.F01884 Erythranthe guttata HOM05D005279 ORTHO05D006757 3.0e-24 116.3 204 36.3
QL01p050319 Quercus lobata HOM05D005279 ORTHO05D006757 1.5e-23 114.0 134 49.3
Lsat_1_v5_gn_8_2100 Lactuca sativa HOM05D005279 ORTHO05D006757 2.5e-23 113.2 223 36.8
Lju5221A0T19 Lonicera japonica HOM05D005279 ORTHO05D006757 5.7e-23 112.1 133 46.6
Lj1A580T7 Lonicera japonica HOM05D005279 ORTHO05D006757 1.3e-22 110.9 133 46.6
Gohir.D08G244200 Gossypium hirsutum HOM05D005279 ORTHO05D006757 1.6e-22 110.5 220 34.5
Gorai.004G260500 Gossypium raimondii HOM05D005279 ORTHO05D006757 1.6e-22 110.5 220 34.5
Gohir.A08G223900 Gossypium hirsutum HOM05D005279 ORTHO05D006757 2.1e-22 110.2 221 34.8
PGR031G1864 Punica granatum HOM05D005279 ORTHO05D006757 6.3e-22 108.6 222 32.0
ClCG11G011000 Citrullus lanatus HOM05D005279 ORTHO05D006757 1.1e-21 107.8 196 36.7
FAN02G0830 Fragaria x ananassa HOM05D005279 ORTHO05D006757 2.4e-21 106.7 212 35.8
THA.LOC104802949 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 5.3e-21 105.5 225 31.1
Cfa006283 Carpinus fangiana HOM05D005279 ORTHO05D006757 9.0e-21 104.8 80 62.5
Prupe.6G359100 Prunus persica HOM05D005279 ORTHO05D006757 7.6e-20 101.7 81 61.7
AUR62000356 Chenopodium quinoa HOM05D005279 ORTHO05D006757 1.9e-18 97.1 221 34.8
ECA233G5391 Erigeron canadensis HOM05D005279 ORTHO05D006757 5.5e-18 95.5 223 34.1
AUR62006699 Chenopodium quinoa HOM05D005279 ORTHO05D006757 9.3e-18 94.7 217 33.6
CAN.G29.21 Capsicum annuum HOM05D005279 ORTHO05D006757 2.1e-17 93.6 82 53.7
HanXRQChr05g0156961 Helianthus annuus HOM05D005279 ORTHO05D006757 2.7e-17 93.2 228 32.5
Carub.0006s1472 Capsella rubella HOM05D005279 ORTHO05D006757 3.6e-17 92.8 223 33.2
Oeu010148.1 Olea europaea HOM05D005279 ORTHO05D006757 3.6e-17 92.8 135 43.7
unitig_26.g8932 Utricularia gibba HOM05D005279 ORTHO05D006757 3.6e-17 92.8 203 33.0
AL6G27470 Arabidopsis lyrata HOM05D005279 ORTHO05D006757 1.3e-16 90.9 220 34.1
CARHR196710 Cardamine hirsuta HOM05D005279 ORTHO05D006757 2.3e-16 90.1 221 34.4
AT5G16520 Arabidopsis thaliana HOM05D005279 ORTHO05D006757 3.0e-16 89.7 225 33.8
EL10Ac4g09419 Beta vulgaris HOM05D005279 ORTHO05D006757 3.3e-15 86.3 213 32.9
Hund07324 Selenicereus undatus HOM05D005279 ORTHO05D006757 3.3e-15 86.3 220 30.9
A03p07830 Brassica napus HOM05D005279 ORTHO05D006757 9.7e-15 84.7 221 33.9
BraA03t10110Z Brassica rapa HOM05D005279 ORTHO05D006757 9.7e-15 84.7 221 33.9
Thhalv10012976m.g Eutrema salsugineum HOM05D005279 ORTHO05D006757 2.2e-14 83.6 229 32.8
THA.LOC104827466 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 4.8e-14 82.4 218 28.0
Sp6g27630 Schrenkiella parvula HOM05D005279 ORTHO05D006757 6.3e-14 82.0 224 32.6
Aa31LG11G13130 Aethionema arabicum HOM05D005279 ORTHO05D006757 6.9e-13 78.6 230 28.7
BcaB01g04978 Brassica carinata HOM05D005279 ORTHO05D006757 6.9e-13 78.6 227 30.8
BolC3t13400H Brassica oleracea HOM05D005279 ORTHO05D006757 6.9e-13 78.6 227 30.8
C03p09050 Brassica napus HOM05D005279 ORTHO05D006757 9.0e-13 78.2 227 30.8
SalBow6G4947 Salvia bowleyana HOM05D005279 ORTHO05D006757 9.0e-13 78.2 150 34.7
Sed0008551 Sechium edule HOM05D005279 ORTHO05D006757 1.2e-12 77.8 92 46.7
SGA_v2.0_scaffold122G33172 Striga asiatica HOM05D005279 ORTHO05D006757 5.9e-12 75.5 125 38.4
MBI07_g25290_MAGBIO Magnolia biondii HOM05D005279 ORTHO05D006757 1.7e-11 73.9 156 34.6
Hund21883 Selenicereus undatus HOM05D005279 ORTHO05D037448 8.8e-08 61.6 61 54.1
Hund30008 Selenicereus undatus HOM05D005279 ORTHO05D037448 8.8e-08 61.6 61 54.1
Ah.04g158770 Amaranthus hybridus HOM05D005279 ORTHO05D006757 4.4e-07 59.3 55 54.5
Hund29802 Selenicereus undatus HOM05D005279 ORTHO05D006757 1.3e-06 57.8 82 40.2
QL01p050333 Quercus lobata HOM05D005279 ORTHO05D037448 1.7e-06 57.4 47 57.4
Hund29803 Selenicereus undatus HOM05D005279 ORTHO05D006757 1.7e-06 57.4 82 40.2
ATR0609G131 Amborella trichopoda HOM05D005279 ORTHO05D006757 2.8e-06 56.6 83 42.2
CDE09G0872 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 3.7e-06 56.2 211 24.6
Hund16011 Selenicereus undatus HOM05D005279 ORTHO05D006757 8.2e-06 55.1 98 33.7


User provided reference genes

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