Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049016 Camellia sinensis var. sinensis HOM05D004767 ORTHO05D005674 1.7e-163 579.3 305 100.0
TAR625G0043 Trochodendron aralioides HOM05D004767 ORTHO05D005674 1.8e-112 409.8 290 71.7
Oeu010411.1 Olea europaea HOM05D004767 ORTHO05D005674 4.0e-112 408.7 312 69.2
TAR381G0314 Trochodendron aralioides HOM05D004767 ORTHO05D005674 1.2e-111 407.1 314 68.8
Cc07_g12190 Coffea canephora HOM05D004767 ORTHO05D005674 3.7e-110 402.1 290 71.7
MSTRG.16702 Avicennia marina HOM05D004767 ORTHO05D005674 1.4e-109 400.2 285 71.2
SGA_v2.0_scaffold108G30887 Striga asiatica HOM05D004767 ORTHO05D005674 9.2e-109 397.5 314 66.2
Hma1.2p1_0085F.1_g044390 Hydrangea macrophylla HOM05D004767 ORTHO05D005674 1.6e-108 396.7 314 68.2
PGSC0003DMG400003462 Solanum tuberosum HOM05D004767 ORTHO05D005674 4.6e-108 395.2 285 71.9
Nn6g31627 Nelumbo nucifera HOM05D004767 ORTHO05D005674 7.8e-108 394.4 314 66.9
Peaxi162Scf00431g00415 Petunia axillaris HOM05D004767 ORTHO05D005674 7.8e-108 394.4 290 70.0
Solyc02g038750.3 Solanum lycopersicum HOM05D004767 ORTHO05D005674 1.7e-107 393.3 285 71.6
Sopen02g012180 Solanum pennellii HOM05D004767 ORTHO05D005674 2.3e-107 392.9 285 71.2
GSVIVG01017458001 Vitis vinifera HOM05D004767 ORTHO05D005674 2.5e-106 389.4 315 66.7
Nitab4.5_0000235g0120 Nicotiana tabacum HOM05D004767 ORTHO05D005674 4.3e-106 388.7 290 69.7
Nitab4.5_0006401g0010 Nicotiana tabacum HOM05D004767 ORTHO05D005674 9.5e-106 387.5 290 70.0
GSVIVG01020926001 Vitis vinifera HOM05D004767 ORTHO05D005674 6.2e-105 384.8 315 66.3
vmacro18476 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 5.2e-104 381.7 252 76.6
CANSAT54G2063 Cannabis sativa HOM05D004767 ORTHO05D005674 6.8e-104 381.3 285 68.1
Sc03g0004110 Simmondsia chinensis HOM05D004767 ORTHO05D005674 2.6e-103 379.4 315 64.1
PGR102G1152 Punica granatum HOM05D004767 ORTHO05D005674 3.4e-103 379.0 285 67.7
Eucgr.H00074 Eucalyptus grandis HOM05D004767 ORTHO05D005674 2.0e-100 369.8 285 65.3
Lalb_Chr05g0214971 Lupinus albus HOM05D004767 ORTHO05D005674 2.0e-100 369.8 290 64.8
QL10p048860 Quercus lobata HOM05D004767 ORTHO05D005674 2.0e-100 369.8 313 62.9
MD12G1063000 Malus domestica HOM05D004767 ORTHO05D005674 2.7e-100 369.4 290 65.2
Glyma.10G129800 Glycine max HOM05D004767 ORTHO05D005674 3.5e-100 369.0 291 64.9
HanXRQChr15g0489741 Helianthus annuus HOM05D004767 ORTHO05D005674 4.6e-100 368.6 290 64.8
Lalb_Chr09g0324851 Lupinus albus HOM05D004767 ORTHO05D005674 1.0e-99 367.5 290 63.4
MD14G1063600 Malus domestica HOM05D004767 ORTHO05D005674 5.0e-99 365.2 290 64.1
Potri.004G095000 Populus trichocarpa HOM05D004767 ORTHO05D005674 6.6e-99 364.8 290 64.5
AUR62012542 Chenopodium quinoa HOM05D004767 ORTHO05D005674 1.1e-98 364.0 290 65.2
EL10Ac3g07307 Beta vulgaris HOM05D004767 ORTHO05D005674 1.5e-98 363.6 289 64.0
PSO017G2362 Papaver somniferum HOM05D004767 ORTHO05D005674 1.5e-98 363.6 290 65.2
Hund21306 Selenicereus undatus HOM05D004767 ORTHO05D005674 1.5e-98 363.6 290 65.2
DCAR_019301 Daucus carota HOM05D004767 ORTHO05D005674 1.9e-98 363.2 297 63.3
RcHm_v2.0_Chr3g0480691 Rosa chinensis HOM05D004767 ORTHO05D005674 3.3e-98 362.5 314 61.1
EL10Ac8g19950 Beta vulgaris HOM05D004767 ORTHO05D005674 4.3e-98 362.1 289 64.0
Prupe.7G070600 Prunus persica HOM05D004767 ORTHO05D005674 4.3e-98 362.1 314 60.5
Potri.017G120100 Populus trichocarpa HOM05D004767 ORTHO05D005674 9.5e-98 360.9 290 63.1
TPR.G26773 Trifolium pratense HOM05D004767 ORTHO05D005674 9.5e-98 360.9 293 62.8
FvH4_6g22900 Fragaria vesca HOM05D004767 ORTHO05D005674 1.2e-97 360.5 314 60.5
FAN02G2069 Fragaria x ananassa HOM05D004767 ORTHO05D005674 1.6e-97 360.1 290 63.8
FAN09G1063 Fragaria x ananassa HOM05D004767 ORTHO05D005674 1.6e-97 360.1 314 60.5
TAR625G0966 Trochodendron aralioides HOM05D004767 ORTHO05D005674 2.1e-97 359.8 264 69.7
ECA233G4977 Erigeron canadensis HOM05D004767 ORTHO05D005674 3.6e-97 359.0 290 64.5
Medtr4g077783 Medicago truncatula HOM05D004767 ORTHO05D005674 3.6e-97 359.0 293 61.8
FAN14G1715 Fragaria x ananassa HOM05D004767 ORTHO05D005674 4.7e-97 358.6 314 60.2
Lj1g0021179 Lotus japonicus HOM05D004767 ORTHO05D005674 6.2e-97 358.2 293 61.4
VMungo1127G0990 Vigna mungo HOM05D004767 ORTHO05D005674 6.2e-97 358.2 290 62.4
CiPaw.03G094400 Carya illinoinensis HOM05D004767 ORTHO05D005674 8.1e-97 357.8 290 63.1
Psat1g185000 Pisum sativum HOM05D004767 ORTHO05D005674 8.1e-97 357.8 295 62.4
Ca_02533_v3 Cicer arietinum L. HOM05D004767 ORTHO05D005674 1.1e-96 357.5 292 62.3
Glyma.12G025800 Glycine max HOM05D004767 ORTHO05D005674 1.4e-96 357.1 290 62.1
Sed0012135 Sechium edule HOM05D004767 ORTHO05D005674 1.8e-96 356.7 285 65.6
Medtr4g111810 Medicago truncatula HOM05D004767 ORTHO05D005674 2.3e-96 356.3 293 61.4
TPR.G18695 Trifolium pratense HOM05D004767 ORTHO05D005674 2.3e-96 356.3 294 62.2
Thecc.01G130700 Theobroma cacao HOM05D004767 ORTHO05D005674 5.2e-96 355.1 292 63.4
Lj4C240T4 Lonicera japonica HOM05D004767 ORTHO05D005674 6.8e-96 354.8 290 64.5
Phvul.011G028400 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 8.9e-96 354.4 290 61.7
Aqoxy6G02991 Aquilegia oxysepala HOM05D004767 ORTHO05D005674 2.6e-95 352.8 291 62.5
Sed0020265 Sechium edule HOM05D004767 ORTHO05D005674 2.6e-95 352.8 285 64.2
Gorai.012G034000 Gossypium raimondii HOM05D004767 ORTHO05D005674 4.4e-95 352.1 292 63.0
Duzib264G0649 Durio zibethinus HOM05D004767 ORTHO05D005674 1.7e-94 350.1 291 62.2
Gohir.D04G022900 Gossypium hirsutum HOM05D004767 ORTHO05D005674 1.7e-94 350.1 292 62.7
Gohir.A05G385700 Gossypium hirsutum HOM05D004767 ORTHO05D005674 2.2e-94 349.7 292 62.7
arahy.Tifrunner.gnm1.ann1.BE8FK9 Arachis hypogaea HOM05D004767 ORTHO05D005674 4.9e-94 348.6 288 61.8
unitig_61.g26025 Utricularia gibba HOM05D004767 ORTHO05D005674 8.3e-94 347.8 285 61.4
arahy.Tifrunner.gnm1.ann1.AK1NBZ Arachis hypogaea HOM05D004767 ORTHO05D005674 1.9e-93 346.7 290 61.7
Rhsim08G0026000 Rhododendron simsii HOM05D004767 ORTHO05D005674 2.4e-93 346.3 282 67.0
CDE08G0085 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 5.4e-93 345.1 290 61.0
Manes.02G116500 Manihot esculenta HOM05D004767 ORTHO05D005674 7.1e-93 344.7 291 61.9
SalBow2G0232 Salvia bowleyana HOM05D004767 ORTHO05D005674 1.6e-92 343.6 271 66.8
Sabra17G0099100 Salix brachista HOM05D004767 ORTHO05D005674 2.1e-92 343.2 293 61.4
SalBow6G2358 Salvia bowleyana HOM05D004767 ORTHO05D005674 2.1e-92 343.2 294 63.6
COL.COLO4_35713 Corchorus olitorius HOM05D004767 ORTHO05D005674 4.6e-92 342.0 286 61.5
SalBow6G5765 Salvia bowleyana HOM05D004767 ORTHO05D005674 6.0e-92 341.7 294 63.3
TWI73G0530 Tripterygium wilfordii HOM05D004767 ORTHO05D005674 6.0e-92 341.7 315 58.4
ClCG10G013460 Citrullus lanatus HOM05D004767 ORTHO05D005674 1.3e-91 340.5 285 62.5
Atru.chr5.1742 Acer truncatum HOM05D004767 ORTHO05D005674 1.1e-90 337.4 285 61.1
RcHm_v2.0_Chr4g0410631 Rosa chinensis HOM05D004767 ORTHO05D005674 1.5e-90 337.0 280 63.6
CDE02G0197 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 2.5e-90 336.3 290 59.3
Psat1g210160 Pisum sativum HOM05D004767 ORTHO05D005674 4.3e-90 335.5 276 62.7
Migut.B00408 Erythranthe guttata HOM05D004767 ORTHO05D005674 5.6e-90 335.1 287 62.7
Cpa.g.sc365.7 Carica papaya HOM05D004767 ORTHO05D005674 7.3e-90 334.7 289 60.6
Actinidia28754 Actinidia chinensis HOM05D004767 ORTHO05D005674 9.5e-90 334.3 315 60.6
MELO3C026614.2 Cucumis melo HOM05D004767 ORTHO05D005674 1.2e-87 327.4 290 59.0
THA.LOC104816808 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 2.0e-87 326.6 290 59.0
Lsat_1_v5_gn_8_114040 Lactuca sativa HOM05D004767 ORTHO05D005674 2.6e-87 326.2 293 60.4
AL4G30210 Arabidopsis lyrata HOM05D004767 ORTHO05D005674 9.9e-87 324.3 278 61.2
AT2G34260 Arabidopsis thaliana HOM05D004767 ORTHO05D005674 1.7e-86 323.6 290 59.0
THA.LOC104820618 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 2.9e-86 322.8 290 57.9
PSO170G0853 Papaver somniferum HOM05D004767 ORTHO05D005674 1.9e-85 320.1 290 59.3
Carub.0004s1593 Capsella rubella HOM05D004767 ORTHO05D005674 2.4e-85 319.7 290 57.9
CARHR128360 Cardamine hirsuta HOM05D004767 ORTHO05D005674 5.4e-85 318.5 290 57.2
COL.COLO4_38041 Corchorus olitorius HOM05D004767 ORTHO05D005674 9.2e-85 317.8 272 61.0
C04p14860 Brassica napus HOM05D004767 ORTHO05D005674 2.1e-84 316.6 290 56.9
BcaC02g11487 Brassica carinata HOM05D004767 ORTHO05D005674 2.7e-84 316.2 290 56.9
Ah.09g236950 Amaranthus hybridus HOM05D004767 ORTHO05D005674 6.0e-84 315.1 270 62.2
BcaB02g09562 Brassica carinata HOM05D004767 ORTHO05D005674 6.0e-84 315.1 290 56.9
Sp4g16550 Schrenkiella parvula HOM05D004767 ORTHO05D005674 6.0e-84 315.1 312 54.8
HPP92_003941 Vanilla planifolia HOM05D004767 ORTHO05D005674 6.0e-84 315.1 290 56.9
BolC4t23059H Brassica oleracea HOM05D004767 ORTHO05D005674 7.8e-84 314.7 290 56.6
Aa31LG9G14020 Aethionema arabicum HOM05D004767 ORTHO05D005674 1.0e-83 314.3 290 57.2
BcaB06g28745 Brassica carinata HOM05D004767 ORTHO05D005674 1.0e-83 314.3 312 54.5
C04p63650 Brassica napus HOM05D004767 ORTHO05D005674 3.9e-83 312.4 290 56.9
A05p11370 Brassica napus HOM05D004767 ORTHO05D005674 6.6e-83 311.6 290 56.2
BraA05t20086Z Brassica rapa HOM05D004767 ORTHO05D005674 6.6e-83 311.6 290 56.2
Dinv40217 Davidia involucrata HOM05D004767 ORTHO05D005674 1.9e-82 310.1 232 69.8
BraA04t18130Z Brassica rapa HOM05D004767 ORTHO05D005674 3.3e-82 309.3 290 56.6
CsaV3_3G043180 Cucumis sativus L. HOM05D004767 ORTHO05D005674 2.4e-80 303.1 290 55.9
Lj3A907T66 Lonicera japonica HOM05D004767 ORTHO05D005674 2.4e-80 303.1 339 51.6
Glyma.11G099900 Glycine max HOM05D004767 ORTHO05D005674 5.8e-79 298.5 261 59.8
Os07g0660700 Oryza sativa ssp. japonica HOM05D004767 ORTHO05D005674 9.9e-79 297.7 290 52.8
Zm00001eb349300 Zea mays HOM05D004767 ORTHO05D005674 2.4e-77 293.1 290 51.7
AUR62014654 Chenopodium quinoa HOM05D004767 ORTHO05D005674 5.6e-74 282.0 261 59.4
AUR62044118 Chenopodium quinoa HOM05D004767 ORTHO05D005674 5.6e-74 282.0 261 59.4
Haze_03669 Corylus avellana HOM05D004767 ORTHO05D005674 5.3e-72 275.4 287 54.0
Thhalv10016919m.g Eutrema salsugineum HOM05D004767 ORTHO05D005674 5.8e-71 271.9 290 51.4
Mapoly0040s0029 Marchantia polymorpha HOM05D004767 ORTHO05D005674 9.3e-69 264.6 290 47.2
AagrBONN_evm.TU.Sc2ySwM_344.1647 Anthoceros agrestis HOM05D004767 ORTHO05D005674 1.5e-66 257.3 289 46.4
Phvul.005G015700 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 5.6e-66 255.4 288 49.3
Phvul.005G015600 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 2.6e-63 246.5 288 48.3
Cfa006688 Carpinus fangiana HOM05D004767 ORTHO05D005674 4.9e-62 242.3 268 52.6
SMO364G0336 Selaginella moellendorffii HOM05D004767 ORTHO05D005674 1.1e-61 241.1 304 43.4
A04p26260 Brassica napus HOM05D004767 ORTHO05D005674 6.9e-56 221.9 195 57.4
Medtr1g076780 Medicago truncatula HOM05D004767 ORTHO05D005674 3.2e-53 213.0 157 66.2
CBR_g37537 Chara braunii HOM05D004767 ORTHO05D005674 1.1e-48 198.0 248 40.3
ATR0680G041 Amborella trichopoda HOM05D004767 ORTHO05D005674 7.6e-47 191.8 157 59.9
Glyma.20G080900 Glycine max HOM05D004767 ORTHO05D005674 9.7e-42 174.9 110 72.7
MCO07G146 Micromonas commoda HOM05D004767 ORTHO05D005674 9.7e-42 174.9 293 35.2
Pp3c5_17020 Physcomitrium patens HOM05D004767 ORTHO05D005674 7.4e-34 148.7 262 35.5
Psat6g227760 Pisum sativum HOM05D004767 ORTHO05D005674 1.3e-33 147.9 117 62.4
QL07p001807 Quercus lobata HOM05D004767 ORTHO05D005674 1.3e-33 147.9 151 51.7
Psat6g227720 Pisum sativum HOM05D004767 ORTHO05D005674 3.7e-33 146.4 140 55.7
SHI13610 Sapria himalayana HOM05D004767 ORTHO05D005674 6.9e-32 142.1 222 40.5
Cre02.g113250 Chlamydomonas reinhardtii HOM05D004767 ORTHO05D005674 3.2e-29 133.3 243 34.6
SEGI_28078 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 3.6e-28 129.8 147 48.3
Phvul.011G028501 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 6.7e-27 125.6 103 59.2
BolC4t27833H Brassica oleracea HOM05D004767 ORTHO05D005674 9.7e-26 121.7 191 39.8
PRCOL_00000722 Prasinoderma coloniale HOM05D004767 ORTHO05D005674 2.8e-25 120.2 290 32.4
Sabra17G0099200 Salix brachista HOM05D004767 ORTHO05D005674 5.3e-24 115.9 79 70.9
Oeu036465.1 Olea europaea HOM05D004767 ORTHO05D005674 1.5e-21 107.8 102 59.8
ATR0231G001 Amborella trichopoda HOM05D004767 ORTHO05D005674 1.6e-20 104.4 70 72.9
SEGI_20710 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 4.4e-18 96.3 95 52.6
vmacro07517 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 1.0e-14 85.1 54 74.1
SEGI_27353 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 1.5e-13 81.3 62 61.3
Lsat_1_v5_gn_6_103760 Lactuca sativa HOM05D004767 ORTHO05D005674 3.2e-13 80.1 58 65.5
Actinidia09820 Actinidia chinensis HOM05D004767 ORTHO05D005674 4.2e-13 79.7 57 66.7
Phvul.011G028300 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 1.2e-12 78.2 149 34.2
GSVIVG01020113001 Vitis vinifera HOM05D004767 ORTHO05D005674 2.1e-12 77.4 56 69.6
Cc11_g01130 Coffea canephora HOM05D004767 ORTHO05D005674 1.3e-09 68.2 47 72.3
RcHm_v2.0_Chr5g0032061 Rosa chinensis HOM05D004767 ORTHO05D005674 1.3e-06 58.2 35 71.4


User provided reference genes

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