Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.9e-164 582.4 292 100.0
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 7.1e-159 563.9 292 96.6
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 4.1e-106 388.7 298 70.1
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 7.7e-105 384.4 298 69.5
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 6.1e-102 374.8 298 67.4
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 2.3e-101 372.9 298 66.8
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 4.0e-101 372.1 296 66.9
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 5.2e-101 371.7 298 66.8
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 5.2e-101 371.7 298 67.8
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 1.5e-100 370.2 297 66.7
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 1.5e-100 370.2 298 66.8
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 1.5e-100 370.2 298 66.4
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 1.5e-100 370.2 297 66.7
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 2.0e-100 369.8 298 66.1
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 1.7e-99 366.7 298 65.4
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 2.8e-99 365.9 298 66.4
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 4.8e-99 365.2 298 66.4
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 6.3e-99 364.8 298 65.4
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 1.8e-98 363.2 298 64.8
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 1.8e-98 363.2 298 64.8
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 1.8e-98 363.2 299 67.2
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 3.1e-98 362.5 296 66.6
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 4.1e-98 362.1 298 64.8
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 4.1e-98 362.1 300 65.3
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 9.1e-98 360.9 296 66.2
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 2.7e-97 359.4 298 64.4
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 3.5e-97 359.0 300 65.3
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 3.5e-97 359.0 296 65.2
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 4.5e-97 358.6 296 64.5
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 4.5e-97 358.6 296 66.2
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 4.5e-97 358.6 298 64.8
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 4.5e-97 358.6 303 64.0
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 5.9e-97 358.2 298 63.4
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 1.0e-96 357.5 296 64.9
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 1.3e-96 357.1 298 63.8
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 1.7e-96 356.7 300 63.0
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 2.9e-96 355.9 298 63.8
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 1.5e-95 353.6 296 64.9
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 1.9e-95 353.2 299 64.5
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 2.5e-95 352.8 298 64.1
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 2.5e-95 352.8 296 63.5
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 2.5e-95 352.8 298 63.8
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 4.2e-95 352.1 300 62.0
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 5.5e-95 351.7 299 64.9
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 5.5e-95 351.7 297 62.6
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 9.4e-95 350.9 300 61.3
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 1.6e-94 350.1 298 63.4
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 1.6e-94 350.1 299 62.9
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 2.1e-94 349.7 297 62.0
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 4.7e-94 348.6 298 63.8
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 4.7e-94 348.6 298 64.1
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 4.7e-94 348.6 297 62.3
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 8.0e-94 347.8 298 63.8
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 1.0e-93 347.4 298 61.4
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 1.0e-93 347.4 298 62.8
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 1.0e-93 347.4 300 61.0
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 1.4e-93 347.1 298 61.4
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 1.4e-93 347.1 297 61.3
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 2.3e-93 346.3 298 63.8
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 2.3e-93 346.3 300 61.0
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 3.0e-93 345.9 298 61.1
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 5.2e-93 345.1 300 60.7
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 6.8e-93 344.7 298 63.1
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 8.8e-93 344.4 298 62.4
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 8.8e-93 344.4 301 62.8
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 1.5e-92 343.6 298 61.7
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 1.5e-92 343.6 300 60.7
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 1.5e-92 343.6 298 62.1
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 2.0e-92 343.2 298 62.8
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 2.6e-92 342.8 298 62.1
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 3.4e-92 342.4 298 60.7
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 3.4e-92 342.4 301 60.5
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 3.4e-92 342.4 300 60.3
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 5.7e-92 341.7 285 66.0
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 7.5e-92 341.3 299 61.5
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 7.5e-92 341.3 298 62.1
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 9.8e-92 340.9 298 61.7
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 3.7e-91 339.0 297 61.6
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 1.1e-90 337.4 299 61.5
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 1.8e-90 336.7 300 62.0
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 1.8e-90 336.7 300 60.7
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 2.4e-90 336.3 300 60.7
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 4.1e-90 335.5 299 61.9
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 1.2e-89 334.0 300 61.0
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 2.7e-89 332.8 297 63.0
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 2.7e-89 332.8 300 60.3
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 2.7e-89 332.8 298 61.1
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 1.0e-88 330.9 298 61.4
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 1.0e-88 330.9 300 60.3
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 3.8e-88 328.9 299 59.5
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 5.0e-88 328.6 297 59.3
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 1.5e-87 327.0 299 59.5
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 3.2e-87 325.9 298 59.7
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 3.2e-87 325.9 299 59.2
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 3.2e-87 325.9 301 59.8
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 4.2e-87 325.5 305 59.0
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 7.2e-87 324.7 299 58.9
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 7.2e-87 324.7 299 59.9
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 7.2e-87 324.7 299 59.9
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 9.5e-87 324.3 299 58.9
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 1.2e-86 323.9 299 57.9
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 1.2e-86 323.9 298 60.1
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 1.6e-86 323.6 298 60.7
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 1.6e-86 323.6 299 59.5
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 1.6e-86 323.6 299 59.5
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 1.6e-86 323.6 299 59.5
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 1.6e-86 323.6 299 59.5
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 2.1e-86 323.2 292 61.0
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 2.1e-86 323.2 299 60.2
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 2.7e-86 322.8 299 60.9
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 4.7e-86 322.0 299 59.2
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 1.2e-84 317.4 299 58.2
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 1.7e-83 313.5 301 57.5
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 4.1e-82 308.9 296 57.4
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 5.4e-82 308.5 279 59.9
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 7.0e-82 308.1 298 57.0
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 1.3e-80 303.9 283 61.5
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 6.6e-80 301.6 305 57.0
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 1.2e-78 297.4 297 56.2
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 2.8e-78 296.2 188 80.9
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 4.4e-68 262.3 233 62.7
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 4.4e-68 262.3 233 62.7
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 2.7e-65 253.1 300 50.0
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 2.7e-65 253.1 300 50.0
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 2.7e-65 253.1 301 45.8
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 7.8e-65 251.5 300 50.3
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 3.0e-64 249.6 298 48.7
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 1.9e-63 246.9 235 57.4
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 1.9e-63 246.9 216 64.8
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 1.2e-62 244.2 301 47.5
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 2.3e-61 240.0 298 47.7
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 1.1e-53 214.5 314 41.7
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 2.1e-46 190.3 205 55.1
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 5.8e-44 182.2 169 60.4
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 2.9e-43 179.9 183 57.4
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 4.9e-43 179.1 303 39.3
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 2.8e-38 163.3 304 35.9
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 2.8e-38 163.3 300 36.7
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 1.8e-37 160.6 165 54.5
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 3.4e-36 156.4 305 36.4
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 1.3e-35 154.5 102 68.6
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 1.0e-32 144.8 303 35.3
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 3.3e-31 139.8 299 34.8
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 1.4e-26 124.4 142 47.9
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 5.8e-20 102.4 139 45.3
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 1.1e-15 88.2 57 75.4


User provided reference genes

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