Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048962 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 8.4e-108 393.7 193 100.0
CSS0023461 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.6e-106 389.4 193 99.5
CSS0001518 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.4e-102 376.3 193 95.9
CSS0002491 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.1e-102 375.2 193 96.4
CSS0006626 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.1e-102 375.2 193 96.4
CSS0008525 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.1e-102 375.2 193 96.4
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 6.7e-97 357.5 183 96.2
CSS0030669 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 6.0e-90 334.3 193 87.0
CSS0036967 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 5.5e-83 311.2 193 83.9
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 3.9e-73 278.5 183 74.3
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 2.0e-72 276.2 183 77.6
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 1.1e-70 270.4 181 76.2
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 3.3e-56 222.2 179 62.0
Oeu064436.1 Olea europaea HOM05D003812 ORTHO05D004393 3.3e-56 222.2 185 62.2
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 1.7e-55 219.9 183 61.2
Cc00_g24630 Coffea canephora HOM05D003812 ORTHO05D004393 7.7e-53 211.1 184 62.0
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 1.3e-52 210.3 184 57.1
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 1.3e-52 210.3 192 55.2
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 2.5e-51 206.1 184 58.2
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 8.0e-50 201.1 200 56.0
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 5.2e-49 198.4 183 57.9
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 4.4e-48 195.3 183 55.2
TAR636G0947 Trochodendron aralioides HOM05D003812 ORTHO05D004393 9.7e-48 194.1 185 58.9
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 2.8e-47 192.6 184 53.8
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 4.8e-47 191.8 183 56.8
Nitab4.5_0000160g0140 Nicotiana tabacum HOM05D003812 ORTHO05D004393 2.4e-46 189.5 184 56.0
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 4.1e-46 188.7 185 57.8
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 5.3e-46 188.3 184 54.9
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 3.5e-45 185.7 183 54.1
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 3.5e-45 185.7 186 52.2
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 4.5e-45 185.3 184 52.2
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.7e-44 183.3 184 51.6
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 1.7e-44 183.3 184 51.6
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 2.2e-44 183.0 183 51.9
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 2.9e-44 182.6 184 52.2
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 6.5e-44 181.4 183 53.0
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 1.5e-43 180.3 184 54.9
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 2.5e-43 179.5 184 51.6
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 2.5e-43 179.5 184 51.6
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 9.4e-43 177.6 184 51.6
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 9.4e-43 177.6 184 51.6
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 2.3e-41 172.9 188 51.6
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 2.3e-41 172.9 184 52.7
Cc06_g19250 Coffea canephora HOM05D003812 ORTHO05D004393 4.0e-41 172.2 183 56.3
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 6.8e-41 171.4 182 51.6
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 1.5e-40 170.2 184 49.5
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 2.0e-40 169.9 184 51.1
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 3.4e-40 169.1 189 48.7
Lalb_Chr05g0212041 Lupinus albus HOM05D003812 ORTHO05D004393 4.4e-40 168.7 184 50.0
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 4.4e-40 168.7 184 48.9
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 5.7e-40 168.3 183 48.6
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 7.5e-40 167.9 181 50.3
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 9.8e-40 167.5 187 49.2
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 1.3e-39 167.2 184 49.5
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 1.7e-39 166.8 191 48.2
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 3.7e-39 165.6 184 48.9
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 6.3e-39 164.9 184 48.4
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 1.4e-38 163.7 188 48.9
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 4.1e-38 162.2 186 49.5
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 1.6e-37 160.2 184 47.8
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 1.6e-37 160.2 184 48.9
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 2.0e-37 159.8 184 47.8
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 2.9e-36 156.0 183 45.9
Sc13g0007550 Simmondsia chinensis HOM05D003812 ORTHO05D004393 6.6e-36 154.8 183 45.4
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 2.5e-35 152.9 184 45.7
RcHm_v2.0_Chr2g0084531 Rosa chinensis HOM05D003812 ORTHO05D004393 9.5e-35 151.0 185 45.4
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 1.2e-34 150.6 184 47.8
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 1.6e-34 150.2 181 49.7
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 2.1e-34 149.8 184 46.7
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 3.6e-34 149.1 187 46.0
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 8.0e-34 147.9 184 45.1
Hund12300 Selenicereus undatus HOM05D003812 ORTHO05D004393 1.0e-33 147.5 191 44.5
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 3.0e-33 146.0 184 44.6
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 4.0e-33 145.6 185 44.3
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 1.5e-32 143.7 184 44.6
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 2.6e-32 142.9 182 44.0
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 5.7e-32 141.7 184 43.5
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 7.5e-32 141.4 185 43.8
SEGI_23375 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 1.3e-31 140.6 186 43.0
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 2.2e-31 139.8 187 43.3
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 3.7e-31 139.0 184 43.5
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 1.4e-30 137.1 182 40.1
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 1.4e-30 137.1 185 45.9
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 2.4e-30 136.3 182 41.8
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 2.4e-30 136.3 182 43.4
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 7.0e-30 134.8 181 39.8
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 9.2e-30 134.4 182 42.9
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 9.2e-30 134.4 182 42.9
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 9.2e-30 134.4 189 38.6
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 1.2e-29 134.0 182 42.9
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 1.6e-29 133.7 181 42.0
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 1.6e-29 133.7 182 39.6
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 2.7e-29 132.9 182 38.5
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 2.7e-29 132.9 182 38.5
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 2.7e-29 132.9 189 41.3
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 2.7e-29 132.9 184 41.8
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 4.6e-29 132.1 182 37.4
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 4.6e-29 132.1 182 37.9
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 4.6e-29 132.1 184 42.4
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 5.9e-29 131.7 182 36.8
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 7.8e-29 131.3 177 42.9
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 1.3e-28 130.6 182 41.2
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 1.3e-28 130.6 182 40.7
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 1.7e-28 130.2 182 39.0
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 2.3e-28 129.8 182 41.8
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 2.9e-28 129.4 182 38.5
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 2.9e-28 129.4 182 38.5
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 6.6e-28 128.3 182 39.6
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 1.1e-27 127.5 182 39.0
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 1.5e-27 127.1 182 40.7
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 1.5e-27 127.1 182 37.9
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 1.5e-27 127.1 182 40.7
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 3.3e-27 125.9 182 39.6
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 5.6e-27 125.2 183 39.9
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 9.5e-27 124.4 184 41.8
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 3.6e-26 122.5 183 38.8
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 5.2e-25 118.6 183 38.3
BcaB01g00718 Brassica carinata HOM05D003812 ORTHO05D004393 1.5e-24 117.1 182 39.6
ATR0580G406 Amborella trichopoda HOM05D003812 ORTHO05D004393 2.2e-23 113.2 184 39.7
VMungo1268G0001 Vigna mungo HOM05D003812 ORTHO05D004393 4.9e-23 112.1 183 38.3
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 6.4e-23 111.7 185 36.2
Ah.13g073190 Amaranthus hybridus HOM05D003812 ORTHO05D004393 2.4e-22 109.8 140 47.1
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 3.2e-22 109.4 175 38.3
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 4.1e-22 109.0 182 37.9
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 2.0e-21 106.7 183 37.2
arahy.Tifrunner.gnm1.ann1.05VQ85 Arachis hypogaea HOM05D003812 ORTHO05D004393 3.5e-21 105.9 155 36.8
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 1.0e-20 104.4 183 34.4
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 5.0e-20 102.1 141 44.7
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 6.6e-20 101.7 82 57.3
Haze_11133 Corylus avellana HOM05D003812 ORTHO05D004393 1.9e-19 100.1 151 39.7
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 7.3e-19 98.2 77 62.3
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 7.3e-19 98.2 61 78.7
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 3.6e-18 95.9 120 50.0
Nitab4.5_0001168g0120 Nicotiana tabacum HOM05D003812 ORTHO05D004393 8.1e-18 94.7 154 38.3
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 6.8e-17 91.7 77 53.2
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 7.5e-16 88.2 185 33.0
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 2.2e-15 86.7 247 29.6
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 1.1e-14 84.3 178 33.1
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 3.9e-12 75.9 182 27.5
SHI01261 Sapria himalayana HOM05D003812 ORTHO05D004393 2.3e-09 66.6 41 68.3


User provided reference genes

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