Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048958 Camellia sinensis var. sinensis HOM05D007745 ORTHO05D009771 1.0e-179 633.3 314 100.0
CSS0006031 Camellia sinensis var. sinensis HOM05D007745 ORTHO05D009771 4.7e-124 448.4 314 77.4
Rhsim06G0036400 Rhododendron simsii HOM05D007745 ORTHO05D009771 4.9e-49 199.1 333 43.2
Actinidia22565 Actinidia chinensis HOM05D007745 ORTHO05D009771 1.5e-45 187.6 322 41.9
Dinv36046 Davidia involucrata HOM05D007745 ORTHO05D009771 5.5e-40 169.1 336 38.4
vmacro21613 Vaccinium macrocarpon HOM05D007745 ORTHO05D009771 4.6e-39 166.0 338 39.6
CSS0036766 Camellia sinensis var. sinensis HOM05D007745 ORTHO05D009771 1.1e-35 154.8 186 57.0
Dinv39385 Davidia involucrata HOM05D000626 ORTHO05D000824 3.8e-33 146.4 224 45.1
Hma1.2p1_0203F.1_g086690 Hydrangea macrophylla HOM05D007745 ORTHO05D009771 4.2e-32 142.9 318 37.7
Lj4A44T41 Lonicera japonica HOM05D007745 ORTHO05D009771 1.3e-28 131.3 190 44.7
GSVIVG01009651001 Vitis vinifera HOM05D007745 ORTHO05D009771 2.0e-26 124.0 346 33.5
Haze_17626 Corylus avellana HOM05D007745 ORTHO05D009771 1.1e-21 108.2 196 40.8
Manes.05G163200 Manihot esculenta HOM05D007745 ORTHO05D009771 6.3e-20 102.4 334 31.7
TAR628G0088 Trochodendron aralioides HOM05D007745 ORTHO05D009771 3.1e-19 100.1 333 31.8
Oeu015593.1 Olea europaea HOM05D007745 ORTHO05D009771 2.6e-18 97.1 328 31.1
Potri.014G041300 Populus trichocarpa HOM05D007745 ORTHO05D009771 3.4e-18 96.7 188 36.7
ECA247G2825 Erigeron canadensis HOM05D000121 ORTHO05D001726 1.3e-17 94.7 179 38.5
CiPaw.16G054300 Carya illinoinensis HOM05D007745 ORTHO05D009771 5.0e-17 92.8 187 34.8
Sabra14G0030100 Salix brachista HOM05D007745 ORTHO05D009771 5.0e-17 92.8 194 34.5
FvH4_2g40240 Fragaria vesca HOM05D007745 ORTHO05D009771 1.9e-16 90.9 327 30.3
Cfa018439 Carpinus fangiana HOM05D007745 ORTHO05D009771 2.5e-16 90.5 194 38.7
Ciclev10001389m.g Citrus clementina HOM05D007745 ORTHO05D009771 3.2e-16 90.1 348 30.2
MSTRG.24305 Avicennia marina HOM05D007745 ORTHO05D009771 4.2e-16 89.7 337 29.4
FAN15G0796 Fragaria x ananassa HOM05D007745 ORTHO05D009771 1.6e-15 87.8 323 30.7
FAN27G0058 Fragaria x ananassa HOM05D007745 ORTHO05D009771 3.6e-15 86.7 181 37.0
Cc10_g03330 Coffea canephora HOM05D007745 ORTHO05D009771 6.1e-15 85.9 318 28.3
FAN20G1509 Fragaria x ananassa HOM05D007745 ORTHO05D009771 1.0e-14 85.1 323 29.7
DCAR_012752 Daucus carota HOM05D007745 ORTHO05D009771 9.7e-13 78.6 167 37.7
RcHm_v2.0_Chr6g0300521 Rosa chinensis HOM05D007745 ORTHO05D009771 6.3e-12 75.9 188 36.7
Gohir.A06G011800 Gossypium hirsutum HOM05D007745 ORTHO05D009771 1.4e-11 74.7 198 31.8
Nn5g29499 Nelumbo nucifera HOM05D007745 ORTHO05D009771 1.4e-11 74.7 343 28.3
Eucgr.A00494 Eucalyptus grandis HOM05D007745 ORTHO05D009771 1.8e-11 74.3 182 33.0
Nn1g05100 Nelumbo nucifera HOM05D000010 ORTHO05D009771 1.8e-11 74.3 159 35.2
Prupe.1G383200 Prunus persica HOM05D007745 ORTHO05D009771 1.8e-11 74.3 332 28.0
QL02p007506 Quercus lobata HOM05D007745 ORTHO05D009771 1.8e-11 74.3 189 34.9
Gohir.D06G009200 Gossypium hirsutum HOM05D007745 ORTHO05D009771 2.4e-11 73.9 198 31.3
Gorai.010G012000 Gossypium raimondii HOM05D007745 ORTHO05D009771 3.1e-11 73.6 198 31.3
Duzib041G0319 Durio zibethinus HOM05D007745 ORTHO05D009771 4.1e-11 73.2 202 33.2
HanXRQChr04g0104891 Helianthus annuus HOM05D007745 ORTHO05D009771 5.3e-11 72.8 181 35.4
MELO3C010923.2 Cucumis melo HOM05D007745 ORTHO05D009771 9.1e-11 72.0 169 33.7
HanXRQChr02g0038981 Helianthus annuus HOM05D007745 ORTHO05D009771 1.6e-10 71.2 172 33.1
Nitab4.5_0000110g0250 Nicotiana tabacum HOM05D007745 ORTHO05D009771 1.6e-10 71.2 194 29.9
Thecc.08G022500 Theobroma cacao HOM05D007745 ORTHO05D009771 5.9e-10 69.3 190 35.3
Nitab4.5_0010511g0010 Nicotiana tabacum HOM05D007745 ORTHO05D009771 1.3e-09 68.2 207 29.0
HanXRQChr02g0038991 Helianthus annuus HOM05D007745 ORTHO05D009771 1.7e-09 67.8 79 49.4
PSO675G1126 Papaver somniferum HOM05D007745 ORTHO05D009771 5.0e-09 66.2 160 34.4
CANSAT25G3090 Cannabis sativa HOM05D007745 ORTHO05D009771 6.5e-09 65.9 188 31.4
Lsat_1_v5_gn_1_18141 Lactuca sativa HOM05D007745 ORTHO05D009771 8.5e-09 65.5 88 40.9
PSO541G3078 Papaver somniferum HOM05D007745 ORTHO05D009771 8.5e-09 65.5 178 32.6
ClCG08G015320 Citrullus lanatus HOM05D007745 ORTHO05D009771 1.1e-08 65.1 216 30.6
HanXRQChr04g0104881 Helianthus annuus HOM05D007745 ORTHO05D009771 2.5e-08 63.9 178 32.0
CsaV3_2G028480 Cucumis sativus L. HOM05D007745 ORTHO05D009771 4.2e-08 63.2 167 32.3
PGSC0003DMG400027855 Solanum tuberosum HOM05D007745 ORTHO05D009771 4.2e-08 63.2 192 29.7
Duzib093G2234 Durio zibethinus HOM05D007745 ORTHO05D009771 9.4e-08 62.0 198 31.3
Sc02g0006490 Simmondsia chinensis HOM05D007745 ORTHO05D009771 9.4e-08 62.0 325 24.9
Gorai.009G204700 Gossypium raimondii HOM05D007745 ORTHO05D009771 2.7e-07 60.5 178 29.8
HanXRQChr09g0268481 Helianthus annuus HOM05D007745 ORTHO05D009771 2.7e-07 60.5 152 31.6
SalBow8G3493 Salvia bowleyana HOM05D007745 ORTHO05D009771 2.7e-07 60.5 171 29.8
SalBow8G4556 Salvia bowleyana HOM05D007745 ORTHO05D009771 2.7e-07 60.5 171 29.8
Gohir.D05G199500 Gossypium hirsutum HOM05D007745 ORTHO05D009771 4.7e-07 59.7 177 29.4
MD15G1032200 Malus domestica HOM05D007745 ORTHO05D009771 4.7e-07 59.7 183 32.2
Gohir.A05G196400 Gossypium hirsutum HOM05D007745 ORTHO05D009771 4.0e-06 56.6 178 32.6
SGA_v2.0_scaffold14G07060 Striga asiatica HOM05D007745 ORTHO05D009771 6.7e-06 55.8 199 30.2


User provided reference genes

Program Settings