Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048955 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 6.4e-185 650.6 323 100.0
Hma1.2p1_0624F.1_g191380 Hydrangea macrophylla HOM05D004887 ORTHO05D006168 6.7e-142 507.7 354 75.7
Dinv32870 Davidia involucrata HOM05D004887 ORTHO05D006168 9.6e-141 503.8 358 75.4
Nitab4.5_0000610g0150 Nicotiana tabacum HOM05D004887 ORTHO05D006168 2.5e-136 489.2 357 72.0
Migut.G01105 Erythranthe guttata HOM05D004887 ORTHO05D006168 2.7e-135 485.7 354 70.6
Migut.D02114 Erythranthe guttata HOM05D004887 ORTHO05D006168 4.6e-135 485.0 357 70.0
Actinidia37217 Actinidia chinensis HOM05D004887 ORTHO05D006168 1.0e-134 483.8 349 74.5
Migut.G01142 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.0e-134 483.8 354 70.3
Oeu041027.1 Olea europaea HOM05D004887 ORTHO05D006168 6.7e-134 481.1 357 70.9
Solyc11g073300.2 Solanum lycopersicum HOM05D004887 ORTHO05D006168 1.5e-133 479.9 358 70.4
Sopen11g030920 Solanum pennellii HOM05D004887 ORTHO05D006168 1.5e-133 479.9 358 70.4
DCAR_018895 Daucus carota HOM05D004887 ORTHO05D006168 9.6e-133 477.2 358 68.4
PGR102G2111 Punica granatum HOM05D004887 ORTHO05D006168 1.4e-131 473.4 351 69.8
TPR.G10217 Trifolium pratense HOM05D004887 ORTHO05D006168 4.1e-131 471.9 351 70.9
GSVIVG01025008001 Vitis vinifera HOM05D004887 ORTHO05D006168 6.9e-131 471.1 358 69.6
CAN.G661.4 Capsicum annuum HOM05D004887 ORTHO05D006168 9.0e-131 470.7 347 70.0
COL.COLO4_18471 Corchorus olitorius HOM05D004887 ORTHO05D006168 9.0e-131 470.7 351 70.1
RcHm_v2.0_Chr5g0063631 Rosa chinensis HOM05D004887 ORTHO05D006168 2.0e-130 469.5 348 70.7
Ciclev10028710m.g Citrus clementina HOM05D004887 ORTHO05D006168 2.6e-130 469.2 351 70.9
Glyma.11G141400 Glycine max HOM05D004887 ORTHO05D006168 2.6e-130 469.2 351 70.4
HanXRQChr04g0107001 Helianthus annuus HOM05D004887 ORTHO05D006168 1.7e-129 466.5 350 69.7
FAN21G1310 Fragaria x ananassa HOM05D004887 ORTHO05D006168 5.0e-129 464.9 348 69.8
CANSAT54G1644 Cannabis sativa HOM05D004887 ORTHO05D006168 6.5e-129 464.5 370 68.1
Migut.N02667 Erythranthe guttata HOM05D004887 ORTHO05D006168 8.5e-129 464.2 355 70.1
Nitab4.5_0003782g0060 Nicotiana tabacum HOM05D004887 ORTHO05D006168 1.1e-128 463.8 337 72.1
Lalb_Chr01g0003761 Lupinus albus HOM05D004887 ORTHO05D006168 1.4e-128 463.4 357 69.2
TAR369G0226 Trochodendron aralioides HOM05D004887 ORTHO05D006168 1.4e-128 463.4 354 68.6
Gohir.A03G039700 Gossypium hirsutum HOM05D004887 ORTHO05D006168 3.2e-128 462.2 351 69.2
FvH4_3g35470 Fragaria vesca HOM05D004887 ORTHO05D006168 4.2e-128 461.8 348 69.5
Medtr4g063570 Medicago truncatula HOM05D004887 ORTHO05D006168 4.2e-128 461.8 348 69.3
Cc01_g12500 Coffea canephora HOM05D004887 ORTHO05D006168 7.2e-128 461.1 349 69.3
MD11G1143700 Malus domestica HOM05D004887 ORTHO05D006168 9.3e-128 460.7 350 68.6
Potri.001G237000 Populus trichocarpa HOM05D004887 ORTHO05D006168 9.3e-128 460.7 347 69.5
Prupe.6G081500 Prunus persica HOM05D004887 ORTHO05D006168 1.2e-127 460.3 348 69.0
arahy.Tifrunner.gnm1.ann1.31UC9J Arachis hypogaea HOM05D004887 ORTHO05D006168 1.6e-127 459.9 351 67.5
Cpa.g.sc190.13 Carica papaya HOM05D004887 ORTHO05D006168 1.6e-127 459.9 354 68.1
Gohir.D03G128400 Gossypium hirsutum HOM05D004887 ORTHO05D006168 1.6e-127 459.9 351 68.9
Lsat_1_v5_gn_8_77921 Lactuca sativa HOM05D004887 ORTHO05D006168 1.6e-127 459.9 345 69.0
MBI14_g18541_MAGBIO Magnolia biondii HOM05D004887 ORTHO05D006168 2.1e-127 459.5 360 69.4
Glyma.12G064800 Glycine max HOM05D004887 ORTHO05D006168 2.7e-127 459.1 356 69.9
ECA247G3571 Erigeron canadensis HOM05D004887 ORTHO05D006168 3.6e-127 458.8 343 68.8
VMungo1127G0043 Vigna mungo HOM05D004887 ORTHO05D006168 3.6e-127 458.8 356 67.4
arahy.Tifrunner.gnm1.ann1.1V42NR Arachis hypogaea HOM05D004887 ORTHO05D006168 4.6e-127 458.4 351 67.2
Gorai.003G135100 Gossypium raimondii HOM05D004887 ORTHO05D006168 4.6e-127 458.4 351 68.7
Phvul.011G065900 Phaseolus vulgaris HOM05D004887 ORTHO05D006168 4.6e-127 458.4 356 66.9
MD03G1097100 Malus domestica HOM05D004887 ORTHO05D006168 7.9e-127 457.6 350 69.1
Peaxi162Scf00406g00137 Petunia axillaris HOM05D004887 ORTHO05D006168 7.9e-127 457.6 340 70.3
Psat7g217880 Pisum sativum HOM05D004887 ORTHO05D006168 2.3e-126 456.1 354 68.6
Eucgr.B02388 Eucalyptus grandis HOM05D004887 ORTHO05D006168 3.0e-126 455.7 359 66.3
Thhalv10013947m.g Eutrema salsugineum HOM05D004887 ORTHO05D006168 3.0e-126 455.7 352 68.5
HanXRQChr06g0175771 Helianthus annuus HOM05D004887 ORTHO05D006168 3.0e-126 455.7 341 69.8
CiPaw.13G097700 Carya illinoinensis HOM05D004887 ORTHO05D006168 1.1e-125 453.8 356 69.1
Lj3g0008400 Lotus japonicus HOM05D004887 ORTHO05D006168 1.1e-125 453.8 351 68.7
AT5G59960 Arabidopsis thaliana HOM05D004887 ORTHO05D006168 1.5e-125 453.4 351 68.1
MSTRG.17840 Avicennia marina HOM05D004887 ORTHO05D006168 2.5e-125 452.6 357 66.1
BcaB08g36206 Brassica carinata HOM05D004887 ORTHO05D006168 5.7e-125 451.4 352 67.3
Potri.009G028500 Populus trichocarpa HOM05D004887 ORTHO05D006168 5.7e-125 451.4 353 67.7
A03p11380 Brassica napus HOM05D004887 ORTHO05D006168 7.4e-125 451.1 345 68.7
THA.LOC104799466 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 9.7e-125 450.7 343 69.1
BcaC04g19652 Brassica carinata HOM05D004887 ORTHO05D006168 1.3e-124 450.3 352 67.3
C09p52470 Brassica napus HOM05D004887 ORTHO05D006168 1.3e-124 450.3 352 67.3
BolC9t58114H Brassica oleracea HOM05D004887 ORTHO05D006168 1.3e-124 450.3 352 67.3
BraA10t43799Z Brassica rapa HOM05D004887 ORTHO05D006168 1.6e-124 449.9 352 67.3
A10p17180 Brassica napus HOM05D004887 ORTHO05D006168 6.3e-124 448.0 352 67.0
Sp6g21640 Schrenkiella parvula HOM05D004887 ORTHO05D006168 1.1e-123 447.2 352 66.8
Nn2g12934 Nelumbo nucifera HOM05D004887 ORTHO05D006168 2.4e-123 446.0 354 66.9
PSO384G2944 Papaver somniferum HOM05D004887 ORTHO05D006168 3.1e-123 445.7 351 65.0
Hund18927 Selenicereus undatus HOM05D004887 ORTHO05D006168 3.1e-123 445.7 351 66.7
Aqoxy4G02983 Aquilegia oxysepala HOM05D004887 ORTHO05D006168 9.1e-123 444.1 355 67.0
Manes.11G133000 Manihot esculenta HOM05D004887 ORTHO05D006168 9.1e-123 444.1 343 67.6
Lsat_1_v5_gn_9_22360 Lactuca sativa HOM05D004887 ORTHO05D006168 1.2e-122 443.7 345 67.2
Duzib150G1309 Durio zibethinus HOM05D004887 ORTHO05D006168 2.6e-122 442.6 351 67.0
PSO339G5095 Papaver somniferum HOM05D004887 ORTHO05D006168 3.4e-122 442.2 351 64.7
CsaV3_1G033620 Cucumis sativus L. HOM05D004887 ORTHO05D006168 4.5e-122 441.8 343 67.3
EL10Ac7g15978 Beta vulgaris HOM05D004887 ORTHO05D006168 2.9e-121 439.1 349 65.3
AL781U10010 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 3.8e-121 438.7 350 66.0
AL8G36530 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 5.0e-121 438.3 384 62.5
Manes.04G032300 Manihot esculenta HOM05D004887 ORTHO05D006168 6.5e-121 438.0 343 68.2
Sc21g0005570 Simmondsia chinensis HOM05D004887 ORTHO05D006168 1.6e-119 433.3 351 64.4
Duzib168G0637 Durio zibethinus HOM05D004887 ORTHO05D006168 2.7e-119 432.6 351 65.5
Gorai.004G004400 Gossypium raimondii HOM05D004887 ORTHO05D006168 2.7e-119 432.6 350 65.4
Rhsim13G0085300 Rhododendron simsii HOM05D001446 ORTHO05D001360 6.1e-119 431.4 412 60.4
arahy.Tifrunner.gnm1.ann1.LTG2DU Arachis hypogaea HOM05D004887 ORTHO05D006168 1.4e-118 430.3 373 62.2
Aa31LG1G12090 Aethionema arabicum HOM05D004887 ORTHO05D006168 5.1e-118 428.3 348 64.9
Gohir.D08G010900 Gossypium hirsutum HOM05D004887 ORTHO05D006168 5.1e-118 428.3 350 64.6
SalBow3G3342 Salvia bowleyana HOM05D004887 ORTHO05D006168 1.3e-116 423.7 377 61.8
ClCG03G001950 Citrullus lanatus HOM05D004887 ORTHO05D006168 4.8e-116 421.8 369 62.3
HPP92_015526 Vanilla planifolia HOM05D004887 ORTHO05D006168 9.1e-115 417.5 348 63.8
Zm00001eb124290 Zea mays HOM05D004887 ORTHO05D006168 5.9e-114 414.8 325 65.2
Os01g0151600 Oryza sativa ssp. japonica HOM05D004887 ORTHO05D006168 7.7e-114 414.5 347 63.1
TWI79G0894 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 8.5e-113 411.0 256 77.7
CSS0023093 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 1.4e-112 410.2 319 70.2
Lj2C1057T15 Lonicera japonica HOM05D004887 ORTHO05D006168 2.1e-111 406.4 236 83.1
Carub.0008s2049 Capsella rubella HOM05D004887 ORTHO05D006168 2.7e-111 406.0 256 78.5
BraA03t10452Z Brassica rapa HOM05D004887 ORTHO05D006168 2.0e-109 399.8 256 77.7
arahy.Tifrunner.gnm1.ann1.RHUE9Y Arachis hypogaea HOM05D004887 ORTHO05D006168 3.7e-108 395.6 283 69.3
Lj1A157T41 Lonicera japonica HOM05D004887 ORTHO05D006168 4.1e-107 392.1 317 66.6
Sed0009981 Sechium edule HOM05D004887 ORTHO05D006168 2.6e-106 389.4 248 76.2
MELO3C020709.2 Cucumis melo HOM05D004887 ORTHO05D006168 1.0e-105 387.5 248 76.2
SGA_v2.0_scaffold61G21266 Striga asiatica HOM05D004887 ORTHO05D006168 1.3e-105 387.1 337 65.0
QL01p032955 Quercus lobata HOM05D004887 ORTHO05D006168 2.2e-105 386.3 334 64.7
AUR62009609 Chenopodium quinoa HOM05D004887 ORTHO05D006168 1.9e-104 383.3 310 66.5
Atru.chr3.3838 Acer truncatum HOM05D004887 ORTHO05D006168 2.7e-103 379.4 294 70.4
FAN25G2556 Fragaria x ananassa HOM05D004887 ORTHO05D006168 1.8e-102 376.7 339 62.5
FAN11G2539 Fragaria x ananassa HOM05D004887 ORTHO05D006168 1.5e-101 373.6 339 61.9
Haze_24049 Corylus avellana HOM05D004887 ORTHO05D006168 1.1e-99 367.5 296 68.2
Cfa011464 Carpinus fangiana HOM05D004887 ORTHO05D006168 2.4e-99 366.3 325 63.7
CDE07G1169 Ceratophyllum demersum HOM05D004887 ORTHO05D006168 4.5e-98 362.1 308 63.6
Duzib170G0837 Durio zibethinus HOM05D004887 ORTHO05D006168 3.8e-97 359.0 343 58.6
AUR62001822 Chenopodium quinoa HOM05D004887 ORTHO05D006168 1.0e-94 350.9 293 65.2
unitig_899.g14894 Utricularia gibba HOM05D004887 ORTHO05D006168 7.5e-93 344.7 306 60.8
THA.LOC104810819 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 1.3e-92 344.0 297 63.3
TWI31G1179 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 3.1e-91 339.3 353 55.2
ATR0559G318 Amborella trichopoda HOM05D004887 ORTHO05D006168 1.1e-88 330.9 300 60.0
Psat7g218040 Pisum sativum HOM05D004887 ORTHO05D006168 1.5e-88 330.5 248 69.8
Pp3c8_24390 Physcomitrium patens HOM05D004887 ORTHO05D006168 8.0e-87 324.7 350 50.6
Pp3c24_20310 Physcomitrium patens HOM05D004887 ORTHO05D006168 4.4e-85 318.9 347 50.1
Actinidia07046 Actinidia chinensis HOM05D004887 ORTHO05D006168 9.8e-85 317.8 255 69.4
CARHR273590 Cardamine hirsuta HOM05D004887 ORTHO05D006168 6.3e-84 315.1 195 79.5
Mapoly0001s0555 Marchantia polymorpha HOM05D004887 ORTHO05D006168 2.3e-81 306.6 354 47.7
SMO118G0033 Selaginella moellendorffii HOM05D004887 ORTHO05D006168 3.8e-81 305.8 349 48.4
Sabra16G0142900 Salix brachista HOM05D001446 ORTHO05D001360 4.0e-78 295.8 387 49.1
FAN16G2077 Fragaria x ananassa HOM05D001446 ORTHO05D001360 5.2e-78 295.4 257 65.0
AagrBONN_evm.TU.Sc2ySwM_344.5355 Anthoceros agrestis HOM05D004887 ORTHO05D006168 2.6e-77 293.1 249 57.4
TAR623G0510 Trochodendron aralioides HOM05D004887 ORTHO05D006168 8.3e-76 288.1 256 65.6
Thecc.09G325700 Theobroma cacao HOM05D004887 ORTHO05D006168 3.2e-75 286.2 245 65.3
Dinv03548 Davidia involucrata HOM05D004887 ORTHO05D006168 7.8e-74 281.6 235 68.9
vmacro03096 Vaccinium macrocarpon HOM05D004887 ORTHO05D006168 1.0e-73 281.2 306 55.2
Ca_19183_v3 Cicer arietinum L. HOM05D004887 ORTHO05D006168 8.6e-73 278.1 249 63.9
SalBow2G3032 Salvia bowleyana HOM05D004887 ORTHO05D006168 1.9e-64 250.4 278 54.0
CBR_g46654 Chara braunii HOM05D004887 ORTHO05D006168 8.1e-63 245.0 322 41.9
Nn2g10420 Nelumbo nucifera HOM05D004887 ORTHO05D006168 8.9e-62 241.5 218 61.9
Gohir.A08G000181 Gossypium hirsutum HOM05D004887 ORTHO05D006168 3.1e-54 216.5 226 56.2
Psat7g218000 Pisum sativum HOM05D004887 ORTHO05D006168 3.4e-53 213.0 147 75.5
Nitab4.5_0000610g0050 Nicotiana tabacum HOM05D004887 ORTHO05D006168 1.7e-49 200.7 159 61.0
PSO384G0451 Papaver somniferum HOM05D004887 ORTHO05D006168 1.6e-39 167.5 137 65.0
CARHR273600 Cardamine hirsuta HOM05D004887 ORTHO05D006168 1.9e-32 144.1 157 54.8
Carub.0008s2068 Capsella rubella HOM05D004887 ORTHO05D006168 9.6e-32 141.7 103 68.9
BolC6t35622H Brassica oleracea HOM05D004887 ORTHO05D006168 6.4e-28 129.0 78 75.6
C06p04980 Brassica napus HOM05D004887 ORTHO05D006168 8.4e-28 128.6 78 75.6
A02p35440 Brassica napus HOM05D004887 ORTHO05D006168 1.9e-27 127.5 78 75.6
BraA02t08545Z Brassica rapa HOM05D004887 ORTHO05D006168 1.9e-27 127.5 78 75.6
C03p13170 Brassica napus HOM05D004887 ORTHO05D006168 4.2e-27 126.3 78 76.9
BolC3t13778H Brassica oleracea HOM05D004887 ORTHO05D006168 6.7e-25 119.0 60 86.7
Duzib205G1865 Durio zibethinus HOM05D004887 ORTHO05D006168 1.5e-24 117.9 120 58.3
Sabra09G0019700 Salix brachista HOM05D004887 ORTHO05D006168 1.8e-22 110.9 172 45.9
HanXRQChr07g0192801 Helianthus annuus HOM05D004887 ORTHO05D225384 3.0e-09 67.0 51 64.7
Lj1A771T11 Lonicera japonica HOM05D004887 ORTHO05D234499 3.3e-08 63.5 40 75.0
HanXRQChr05g0134321 Helianthus annuus HOM05D004887 ORTHO05D025733 1.7e-07 61.2 46 63.0
Lj1A771T12 Lonicera japonica HOM05D024127 ORTHO05D025733 6.9e-06 55.8 42 61.9


User provided reference genes

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