Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048953 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D033857 3.4e-25 117.5 56 100.0
CSS0049091 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D003058 6.3e-24 113.2 55 96.4
Rhsim12G0181800 Rhododendron simsii HOM05D001551 ORTHO05D003058 3.0e-13 77.8 52 69.2
Rhsim12G0181400 Rhododendron simsii HOM05D001551 ORTHO05D003058 5.0e-13 77.0 52 69.2
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 9.5e-12 72.8 45 75.6
Dinv13709 Davidia involucrata HOM05D001551 ORTHO05D033857 2.8e-11 71.2 44 72.7
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 4.7e-11 70.5 43 76.7
CSS0043911 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D003058 1.1e-10 69.3 54 61.1
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 1.1e-10 69.3 47 70.2
CSS0019681 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D003058 3.1e-10 67.8 40 72.5
Rhsim08G0198800 Rhododendron simsii HOM05D001551 ORTHO05D003058 3.1e-10 67.8 43 74.4
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 1.2e-09 65.9 44 68.2
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 1.2e-09 65.9 50 64.0
Gohir.D12G196600 Gossypium hirsutum HOM05D001551 ORTHO05D003058 3.4e-09 64.3 45 66.7
Gorai.008G211200 Gossypium raimondii HOM05D001551 ORTHO05D003058 3.4e-09 64.3 45 66.7
TPR.G11384 Trifolium pratense HOM05D001551 ORTHO05D003058 3.4e-09 64.3 42 71.4
Thhalv10026167m.g Eutrema salsugineum HOM05D001551 ORTHO05D003058 4.4e-09 63.9 53 60.4
Duzib205G0895 Durio zibethinus HOM05D001551 ORTHO05D003058 5.8e-09 63.5 43 65.1
Nn3g16253 Nelumbo nucifera HOM05D001551 ORTHO05D003058 5.8e-09 63.5 58 55.2
Medtr3g098500 Medicago truncatula HOM05D001551 ORTHO05D003058 7.5e-09 63.2 37 70.3
BcaC08g44295 Brassica carinata HOM05D001551 ORTHO05D003058 9.8e-09 62.8 34 79.4
Hma1.2p1_0452F.1_g155920 Hydrangea macrophylla HOM05D001551 ORTHO05D003058 9.8e-09 62.8 47 68.1
Lj4g0005729 Lotus japonicus HOM05D001551 ORTHO05D003058 1.3e-08 62.4 53 60.4
Actinidia08914 Actinidia chinensis HOM05D001551 ORTHO05D003058 1.7e-08 62.0 51 56.9
Psat5g055400 Pisum sativum HOM05D001551 ORTHO05D003058 1.7e-08 62.0 39 69.2
A05p16610 Brassica napus HOM05D001551 ORTHO05D003058 2.2e-08 61.6 34 76.5
C06p17160 Brassica napus HOM05D001551 ORTHO05D003058 2.2e-08 61.6 34 76.5
BolC6t36911H Brassica oleracea HOM05D001551 ORTHO05D003058 2.2e-08 61.6 34 76.5
Lj5A86T67 Lonicera japonica HOM05D001551 ORTHO05D003058 2.2e-08 61.6 44 63.6
MD06G1128900 Malus domestica HOM05D001551 ORTHO05D003058 2.2e-08 61.6 46 58.7
AT4G14100 Arabidopsis thaliana HOM05D001551 ORTHO05D003058 2.9e-08 61.2 34 73.5
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 2.9e-08 61.2 55 54.5
Manes.06G127500 Manihot esculenta HOM05D001551 ORTHO05D003058 2.9e-08 61.2 56 53.6
Medtr3g098490 Medicago truncatula HOM05D001551 ORTHO05D003058 3.7e-08 60.8 34 73.5
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 3.7e-08 60.8 44 61.4
TWI23G0256 Tripterygium wilfordii HOM05D001551 ORTHO05D003058 3.7e-08 60.8 31 83.9
Glyma.04G202500 Glycine max HOM05D001551 ORTHO05D003058 4.9e-08 60.5 42 66.7
THA.LOC104804786 Tarenaya hassleriana HOM05D001551 ORTHO05D003058 4.9e-08 60.5 53 50.9
AL7G42330 Arabidopsis lyrata HOM05D001551 ORTHO05D003058 6.4e-08 60.1 34 73.5
Sp7g11890 Schrenkiella parvula HOM05D001551 ORTHO05D003058 6.4e-08 60.1 42 59.5
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 8.3e-08 59.7 28 85.7
Nn3g16254 Nelumbo nucifera HOM05D001551 ORTHO05D003058 8.3e-08 59.7 41 63.4
Potri.015G108200 Populus trichocarpa HOM05D001551 ORTHO05D003058 8.3e-08 59.7 43 62.8
QL03p048896 Quercus lobata HOM05D001551 ORTHO05D003058 8.3e-08 59.7 53 58.5
Atru.chr12.1439 Acer truncatum HOM05D001551 ORTHO05D003058 1.1e-07 59.3 51 51.0
EL10Ac3g06880 Beta vulgaris HOM05D001551 ORTHO05D003058 1.1e-07 59.3 46 52.2
BcaC06g35565 Brassica carinata HOM05D001551 ORTHO05D003058 1.1e-07 59.3 34 82.4
A07p08620 Brassica napus HOM05D001551 ORTHO05D003058 1.1e-07 59.3 34 82.4
C07p13460 Brassica napus HOM05D001551 ORTHO05D003058 1.1e-07 59.3 34 82.4
BolC7t41841H Brassica oleracea HOM05D001551 ORTHO05D003058 1.1e-07 59.3 34 82.4
BraA07t28651Z Brassica rapa HOM05D001551 ORTHO05D003058 1.1e-07 59.3 34 82.4
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 1.1e-07 59.3 41 61.0
Nitab4.5_0000069g0480 Nicotiana tabacum HOM05D001551 ORTHO05D003058 1.1e-07 59.3 52 57.7
Phvul.009G158700 Phaseolus vulgaris HOM05D001551 ORTHO05D003058 1.1e-07 59.3 31 77.4
RcHm_v2.0_Chr7g0188511 Rosa chinensis HOM05D001551 ORTHO05D003058 1.1e-07 59.3 45 64.4
BraA05t20567Z Brassica rapa HOM05D001551 ORTHO05D003058 1.4e-07 58.9 42 61.9
Glyma.06G163000 Glycine max HOM05D001551 ORTHO05D003058 1.4e-07 58.9 30 80.0
Lalb_Chr12g0202571 Lupinus albus HOM05D001551 ORTHO05D003058 1.4e-07 58.9 49 57.1
MD13G1132000 Malus domestica HOM05D001551 ORTHO05D003058 1.4e-07 58.9 41 63.4
Nn7g36412 Nelumbo nucifera HOM05D001551 ORTHO05D003058 1.4e-07 58.9 39 66.7
TPR.G12858 Trifolium pratense HOM05D001551 ORTHO05D003058 1.4e-07 58.9 59 54.2
Aa31LG9G3280 Aethionema arabicum HOM05D001551 ORTHO05D003058 1.9e-07 58.5 31 77.4
MSTRG.446 Avicennia marina HOM05D001551 ORTHO05D003058 1.9e-07 58.5 47 57.4
BcaB07g33056 Brassica carinata HOM05D001551 ORTHO05D003058 1.9e-07 58.5 34 76.5
CARHR099750 Cardamine hirsuta HOM05D001551 ORTHO05D003058 1.9e-07 58.5 36 69.4
Ca_10873_v3 Cicer arietinum L. HOM05D001551 ORTHO05D003058 1.9e-07 58.5 28 85.7
ClCG06G001710 Citrullus lanatus HOM05D001551 ORTHO05D003058 1.9e-07 58.5 46 54.3
Ciclev10005873m.g Citrus clementina HOM05D001551 ORTHO05D003058 1.9e-07 58.5 41 65.9
Gorai.005G197200 Gossypium raimondii HOM05D001551 ORTHO05D003058 1.9e-07 58.5 50 52.0
Lj1g0026174 Lotus japonicus HOM05D001551 ORTHO05D003058 1.9e-07 58.5 28 85.7
MD16G1142300 Malus domestica HOM05D001551 ORTHO05D003058 1.9e-07 58.5 32 78.1
Nitab4.5_0002199g0010 Nicotiana tabacum HOM05D001551 ORTHO05D003058 1.9e-07 58.5 51 58.8
Prupe.1G213400 Prunus persica HOM05D001551 ORTHO05D003058 1.9e-07 58.5 48 56.2
Prupe.5G140200 Prunus persica HOM05D001551 ORTHO05D003058 1.9e-07 58.5 48 56.2
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 1.9e-07 58.5 42 61.9
TAR374G0720 Trochodendron aralioides HOM05D001551 ORTHO05D003058 1.9e-07 58.5 44 59.1
BcaB06g26539 Brassica carinata HOM05D001551 ORTHO05D003058 2.4e-07 58.2 33 75.8
Cfa018697 Carpinus fangiana HOM05D001551 ORTHO05D003058 2.4e-07 58.2 45 62.2
FAN08G2240 Fragaria x ananassa HOM05D001551 ORTHO05D003058 2.4e-07 58.2 46 63.0
Hma1.2p1_0452F.1_g155910 Hydrangea macrophylla HOM05D001551 ORTHO05D003058 2.4e-07 58.2 42 71.4
Potri.001G068800 Populus trichocarpa HOM05D001551 ORTHO05D003058 2.4e-07 58.2 48 56.2
PGSC0003DMG400014172 Solanum tuberosum HOM05D001551 ORTHO05D003058 2.4e-07 58.2 31 80.6
Thecc.03G141900 Theobroma cacao HOM05D001551 ORTHO05D003058 2.4e-07 58.2 41 63.4
GSVIVG01001108001 Vitis vinifera HOM05D001551 ORTHO05D003058 2.4e-07 58.2 50 56.0
Aqoxy3G01860 Aquilegia oxysepala HOM05D001551 ORTHO05D003058 3.2e-07 57.8 37 75.7
AT3G23760 Arabidopsis thaliana HOM05D001551 ORTHO05D003058 3.2e-07 57.8 34 70.6
Carub.0007s2834 Capsella rubella HOM05D001551 ORTHO05D003058 3.2e-07 57.8 33 69.7
Cc11_g14920 Coffea canephora HOM05D001551 ORTHO05D003058 3.2e-07 57.8 29 86.2
Gohir.A03G152600 Gossypium hirsutum HOM05D001551 ORTHO05D003058 3.2e-07 57.8 50 50.0
Nitab4.5_0012775g0010 Nicotiana tabacum HOM05D001551 ORTHO05D003058 3.2e-07 57.8 43 60.5
Carub.0003s2407 Capsella rubella HOM05D001551 ORTHO05D003058 4.1e-07 57.4 31 77.4
COL.COLO4_37270 Corchorus olitorius HOM05D001551 ORTHO05D003058 4.1e-07 57.4 29 79.3
CsaV3_6G007720 Cucumis sativus L. HOM05D001551 ORTHO05D003058 4.1e-07 57.4 46 56.5
Eucgr.G01981 Eucalyptus grandis HOM05D001551 ORTHO05D003058 4.1e-07 57.4 52 53.8
Thhalv10002677m.g Eutrema salsugineum HOM05D001551 ORTHO05D003058 4.1e-07 57.4 33 72.7
FAN04G1708 Fragaria x ananassa HOM05D001551 ORTHO05D003058 4.1e-07 57.4 46 63.0
FAN17G0263 Fragaria x ananassa HOM05D001551 ORTHO05D003058 4.1e-07 57.4 29 82.8
Peaxi162Scf00097g01221 Petunia axillaris HOM05D001551 ORTHO05D003058 4.1e-07 57.4 31 80.6
FvH4_5g09720 Fragaria vesca HOM05D001551 ORTHO05D003058 5.4e-07 57.0 46 63.0
FAN18G3527 Fragaria x ananassa HOM05D001551 ORTHO05D003058 5.4e-07 57.0 46 63.0
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 5.4e-07 57.0 41 61.0
Solyc03g118120.3 Solanum lycopersicum HOM05D001551 ORTHO05D003058 5.4e-07 57.0 40 67.5
Sopen03g037020 Solanum pennellii HOM05D001551 ORTHO05D003058 5.4e-07 57.0 40 67.5
Thecc.02G190800 Theobroma cacao HOM05D001551 ORTHO05D003058 5.4e-07 57.0 32 75.0
VMungo0251G0878 Vigna mungo HOM05D001551 ORTHO05D003058 5.4e-07 57.0 32 78.1
AL3G38660 Arabidopsis lyrata HOM05D001551 ORTHO05D003058 7.0e-07 56.6 34 67.6
arahy.Tifrunner.gnm1.ann1.V1VZZ7 Arachis hypogaea HOM05D001551 ORTHO05D003058 7.0e-07 56.6 30 73.3
Duzib052G0287 Durio zibethinus HOM05D001551 ORTHO05D003058 7.0e-07 56.6 40 67.5
Gohir.D02G175600 Gossypium hirsutum HOM05D001551 ORTHO05D003058 7.0e-07 56.6 33 72.7
MBI15_g25772_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D003058 7.0e-07 56.6 31 74.2
Manes.09G189100 Manihot esculenta HOM05D001551 ORTHO05D003058 7.0e-07 56.6 50 54.0
PSO017G0692 Papaver somniferum HOM05D001551 ORTHO05D003058 7.0e-07 56.6 42 64.3
PGSC0003DMG400016403 Solanum tuberosum HOM05D001551 ORTHO05D003058 7.0e-07 56.6 29 82.8
CiPaw.05G100000 Carya illinoinensis HOM05D001551 ORTHO05D003058 9.2e-07 56.2 31 74.2
CiPaw.06G110200 Carya illinoinensis HOM05D001551 ORTHO05D003058 9.2e-07 56.2 51 54.9
Ca_16821_v3 Cicer arietinum L. HOM05D001551 ORTHO05D003058 9.2e-07 56.2 34 70.6
MELO3C022361.2 Cucumis melo HOM05D001551 ORTHO05D003058 9.2e-07 56.2 46 54.3
Migut.K01045 Erythranthe guttata HOM05D001551 ORTHO05D003058 9.2e-07 56.2 29 79.3
Eucgr.G01982 Eucalyptus grandis HOM05D001551 ORTHO05D003058 9.2e-07 56.2 56 50.0
FAN13G1975 Fragaria x ananassa HOM05D001551 ORTHO05D003058 9.2e-07 56.2 46 63.0
Oeu010263.1 Olea europaea HOM05D001551 ORTHO05D003058 9.2e-07 56.2 29 82.8
PSO017G3245 Papaver somniferum HOM05D001551 ORTHO05D003058 9.2e-07 56.2 42 61.9
PSO063G0050 Papaver somniferum HOM05D001551 ORTHO05D003058 9.2e-07 56.2 42 61.9
RcHm_v2.0_Chr4g0428721 Rosa chinensis HOM05D001551 ORTHO05D003058 9.2e-07 56.2 33 72.7
CAN.G1008.51 Capsicum annuum HOM05D001551 ORTHO05D003058 1.2e-06 55.8 40 65.0
CAN.G282.73 Capsicum annuum HOM05D001551 ORTHO05D003058 1.2e-06 55.8 27 88.9
CARHR220090 Cardamine hirsuta HOM05D001551 ORTHO05D003058 1.2e-06 55.8 31 74.2
Medtr8g096110 Medicago truncatula HOM05D001551 ORTHO05D003058 1.2e-06 55.8 56 50.0
Oeu051185.1 Olea europaea HOM05D001551 ORTHO05D003058 1.2e-06 55.8 43 62.8
RcHm_v2.0_Chr4g0428731 Rosa chinensis HOM05D001551 ORTHO05D003058 1.2e-06 55.8 49 53.1
SGA_v2.0_scaffold37G14671 Striga asiatica HOM05D001551 ORTHO05D003058 1.2e-06 55.8 32 71.9
arahy.Tifrunner.gnm1.ann1.1UR2FN Arachis hypogaea HOM05D001551 ORTHO05D003058 1.6e-06 55.5 30 70.0
arahy.Tifrunner.gnm1.ann1.YUW7Y0 Arachis hypogaea HOM05D001551 ORTHO05D003058 1.6e-06 55.5 30 70.0
Lj6A839T36 Lonicera japonica HOM05D001551 ORTHO05D003058 1.6e-06 55.5 33 69.7
Sc08g0001820 Simmondsia chinensis HOM05D001551 ORTHO05D003058 1.6e-06 55.5 29 79.3
EL10Ac6g13614 Beta vulgaris HOM05D001551 ORTHO05D003058 2.1e-06 55.1 31 71.0
DCAR_016334 Daucus carota HOM05D001551 ORTHO05D003058 2.1e-06 55.1 28 75.0
FvH4_4g22500 Fragaria vesca HOM05D001551 ORTHO05D003058 2.1e-06 55.1 29 79.3
Gohir.A12G194150 Gossypium hirsutum HOM05D001551 ORTHO05D003058 2.1e-06 55.1 42 59.5
Cfa009458 Carpinus fangiana HOM05D001551 ORTHO05D008917 2.7e-06 54.7 29 79.3
AUR62005719 Chenopodium quinoa HOM05D001551 ORTHO05D003058 2.7e-06 54.7 31 67.7
COL.COLO4_08433 Corchorus olitorius HOM05D001551 ORTHO05D003058 2.7e-06 54.7 34 64.7
Haze_12513 Corylus avellana HOM05D001551 ORTHO05D003058 2.7e-06 54.7 29 79.3
MELO3C022360.2 Cucumis melo HOM05D001551 ORTHO05D003058 2.7e-06 54.7 28 82.1
Migut.I00663 Erythranthe guttata HOM05D001551 ORTHO05D003058 2.7e-06 54.7 29 75.9
Lsat_1_v5_gn_1_40201 Lactuca sativa HOM05D001551 ORTHO05D003058 2.7e-06 54.7 52 50.0
Hund15731 Selenicereus undatus HOM05D001551 ORTHO05D003058 2.7e-06 54.7 29 75.9
Solyc01g008100.3 Solanum lycopersicum HOM05D001551 ORTHO05D003058 2.7e-06 54.7 29 79.3
CAN.G1008.50 Capsicum annuum HOM05D001551 ORTHO05D003058 3.5e-06 54.3 29 72.4
MELO3C022362.2 Cucumis melo HOM05D001551 ORTHO05D003058 3.5e-06 54.3 48 52.1
Sp3g21470 Schrenkiella parvula HOM05D001551 ORTHO05D003058 3.5e-06 54.3 34 73.5
Hund15118 Selenicereus undatus HOM05D001551 ORTHO05D003058 3.5e-06 54.3 29 75.9
Cc04_g05760 Coffea canephora HOM05D001551 ORTHO05D003058 4.6e-06 53.9 29 79.3
PSO017G1474 Papaver somniferum HOM05D001551 ORTHO05D003058 4.6e-06 53.9 33 66.7
Phvul.002G280800 Phaseolus vulgaris HOM05D001551 ORTHO05D003058 4.6e-06 53.9 43 62.8
PGSC0003DMG400025574 Solanum tuberosum HOM05D001551 ORTHO05D003058 4.6e-06 53.9 29 72.4
SGA_v2.0_scaffold5G02807 Striga asiatica HOM05D001551 ORTHO05D003058 4.6e-06 53.9 29 75.9
unitig_747.g21317 Utricularia gibba HOM05D001551 ORTHO05D000263 4.6e-06 53.9 29 75.9
MSTRG.11202 Avicennia marina HOM05D001551 ORTHO05D003058 6.0e-06 53.5 29 75.9
CsaV3_6G007710 Cucumis sativus L. HOM05D001551 ORTHO05D003058 6.0e-06 53.5 46 50.0
Glyma.05G199600 Glycine max HOM05D001551 ORTHO05D003058 6.0e-06 53.5 43 60.5
Psat7g039800 Pisum sativum HOM05D001551 ORTHO05D003058 6.0e-06 53.5 50 54.0
SalBow7G2799 Salvia bowleyana HOM05D001551 ORTHO05D003058 6.0e-06 53.5 31 71.0
Nitab4.5_0007345g0080 Nicotiana tabacum HOM05D001551 ORTHO05D003058 7.8e-06 53.1 44 52.3
Sopen01g003650 Solanum pennellii HOM05D001551 ORTHO05D003058 7.8e-06 53.1 29 75.9


User provided reference genes

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