Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047922 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 3.9e-28 127.5 67 100.0
CSS0048944 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 3.9e-28 127.5 67 100.0
CSS0024408 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 2.1e-21 105.1 75 80.0
Manes.07G035800 Manihot esculenta HOM05D007310 ORTHO05D002375 6.9e-17 90.1 64 68.8
Dinv24166 Davidia involucrata HOM05D007310 ORTHO05D002375 2.6e-16 88.2 64 65.6
Hma1.2p1_0784F.1_g217300 Hydrangea macrophylla HOM05D007310 ORTHO05D002375 2.9e-15 84.7 64 65.6
Manes.07G038100 Manihot esculenta HOM05D007310 ORTHO05D002375 3.8e-15 84.3 64 67.2
Peaxi162Scf00299g00914 Petunia axillaris HOM05D007310 ORTHO05D002375 9.3e-14 79.7 60 66.7
Ciclev10030152m.g Citrus clementina HOM05D007310 ORTHO05D002375 1.2e-13 79.3 64 57.8
Nitab4.5_0000863g0020 Nicotiana tabacum HOM05D007310 ORTHO05D002375 1.2e-13 79.3 60 65.0
Rhsim05G0103200 Rhododendron simsii HOM05D007310 ORTHO05D002375 2.7e-13 78.2 61 67.2
Potri.001G310100 Populus trichocarpa HOM05D007310 ORTHO05D002375 3.5e-13 77.8 62 62.9
Oeu022081.1 Olea europaea HOM05D007310 ORTHO05D002375 6.0e-13 77.0 64 64.1
Glyma.13G042400 Glycine max HOM05D007310 ORTHO05D002375 1.0e-12 76.3 62 62.9
Atru.chr6.1218 Acer truncatum HOM05D007310 ORTHO05D002375 1.3e-12 75.9 65 60.0
CAN.G523.36 Capsicum annuum HOM05D007310 ORTHO05D002375 2.3e-12 75.1 64 59.4
Nitab4.5_0006625g0010 Nicotiana tabacum HOM05D007310 ORTHO05D002375 3.0e-12 74.7 60 61.7
PGSC0003DMG400012536 Solanum tuberosum HOM05D007310 ORTHO05D002375 3.9e-12 74.3 64 56.2
Solyc01g105600.3 Solanum lycopersicum HOM05D007310 ORTHO05D002375 5.1e-12 73.9 64 56.2
Glyma.08G070200 Glycine max HOM05D007310 ORTHO05D002375 6.7e-12 73.6 62 59.7
Psat7g100440 Pisum sativum HOM05D007310 ORTHO05D002375 6.7e-12 73.6 64 56.2
Thecc.02G133200 Theobroma cacao HOM05D007310 ORTHO05D002375 8.7e-12 73.2 64 54.7
Sopen01g048060 Solanum pennellii HOM05D007310 ORTHO05D002375 1.5e-11 72.4 64 54.7
RcHm_v2.0_Chr7g0236611 Rosa chinensis HOM05D007310 ORTHO05D002375 1.9e-11 72.0 61 60.7
Lalb_Chr09g0326871 Lupinus albus HOM05D007310 ORTHO05D002375 2.5e-11 71.6 64 57.8
Prupe.8G066300 Prunus persica HOM05D007310 ORTHO05D002375 2.5e-11 71.6 60 58.3
Phvul.002G211100 Phaseolus vulgaris HOM05D007310 ORTHO05D002375 3.3e-11 71.2 62 58.1
arahy.Tifrunner.gnm1.ann1.KVX74B Arachis hypogaea HOM05D007310 ORTHO05D002375 4.3e-11 70.9 64 54.7
arahy.Tifrunner.gnm1.ann1.U7VQVC Arachis hypogaea HOM05D007310 ORTHO05D002375 4.3e-11 70.9 64 54.7
ECA234G2182 Erigeron canadensis HOM05D007310 ORTHO05D002375 5.6e-11 70.5 64 62.5
Sabra17G0036600 Salix brachista HOM05D007310 ORTHO05D002375 5.6e-11 70.5 62 58.1
CiPaw.05G032100 Carya illinoinensis HOM05D007310 ORTHO05D002375 9.6e-11 69.7 59 66.1
FAN24G3359 Fragaria x ananassa HOM05D007310 ORTHO05D004145 1.3e-10 69.3 60 56.7
VMungo0251G1327 Vigna mungo HOM05D007310 ORTHO05D002375 1.3e-10 69.3 62 56.5
PGR142G1548 Punica granatum HOM05D007310 ORTHO05D002375 1.6e-10 68.9 56 60.7
Sabra17G0042000 Salix brachista HOM05D007310 ORTHO05D002375 1.6e-10 68.9 62 56.5
Ca_18369_v3 Cicer arietinum L. HOM05D007310 ORTHO05D002375 2.1e-10 68.6 66 51.5
GSVIVG01015685001 Vitis vinifera HOM05D007310 ORTHO05D002375 2.1e-10 68.6 69 56.5
FvH4_2g13500 Fragaria vesca HOM05D007310 ORTHO05D002375 2.8e-10 68.2 60 55.0
CiPaw.06G156100 Carya illinoinensis HOM05D007310 ORTHO05D002375 3.7e-10 67.8 60 63.3
SalBow8G1210 Salvia bowleyana HOM05D007310 ORTHO05D002375 3.7e-10 67.8 66 48.5
TPR.G2868 Trifolium pratense HOM05D007310 ORTHO05D002375 3.7e-10 67.8 66 53.0
CARHR104210 Cardamine hirsuta HOM05D007310 ORTHO05D002375 6.2e-10 67.0 59 55.9
Duzib248G0762 Durio zibethinus HOM05D007310 ORTHO05D002375 6.2e-10 67.0 62 53.2
HanXRQChr10g0290991 Helianthus annuus HOM05D007310 ORTHO05D002375 8.2e-10 66.6 64 57.8
Migut.B00577 Erythranthe guttata HOM05D007310 ORTHO05D002375 1.1e-09 66.2 62 51.6
Eucgr.I02631 Eucalyptus grandis HOM05D007310 ORTHO05D002375 1.4e-09 65.9 62 59.7
Carub.0003s2834 Capsella rubella HOM05D007310 ORTHO05D002375 1.8e-09 65.5 66 47.0
FAN27G1440 Fragaria x ananassa HOM05D007310 ORTHO05D002375 2.4e-09 65.1 60 53.3
Cc02_g21140 Coffea canephora HOM05D007310 ORTHO05D002375 3.1e-09 64.7 62 46.8
AT2G14095 Arabidopsis thaliana HOM05D007310 ORTHO05D002375 4.0e-09 64.3 65 46.2
SGA_v2.0_scaffold14G07142 Striga asiatica HOM05D007310 ORTHO05D002375 4.0e-09 64.3 66 47.0
TWI14G0938 Tripterygium wilfordii HOM05D007310 ORTHO05D002375 4.0e-09 64.3 62 50.0
Cpa.g.sc42.21 Carica papaya HOM05D007310 ORTHO05D002375 5.3e-09 63.9 62 50.0
FAN15G0442 Fragaria x ananassa HOM05D007310 ORTHO05D002375 5.3e-09 63.9 60 53.3
Cfa005685 Carpinus fangiana HOM05D007310 ORTHO05D002375 9.0e-09 63.2 64 53.1
AUR62012905 Chenopodium quinoa HOM05D007310 ORTHO05D002375 1.2e-08 62.8 64 50.0
Sc08g0003780 Simmondsia chinensis HOM05D007310 ORTHO05D002375 1.2e-08 62.8 59 52.5
CANSAT11G0123 Cannabis sativa HOM05D007310 ORTHO05D002375 1.5e-08 62.4 55 50.9
Haze_10565 Corylus avellana HOM05D007310 ORTHO05D002375 1.5e-08 62.4 64 53.1
DCAR_021882 Daucus carota HOM05D007310 ORTHO05D002375 1.5e-08 62.4 60 50.0
Lj4g0014623 Lotus japonicus HOM05D007310 ORTHO05D002375 3.4e-08 61.2 64 50.0
MD05G1054900 Malus domestica HOM05D007310 ORTHO05D002375 3.4e-08 61.2 58 53.4
QL11p023211 Quercus lobata HOM05D007310 ORTHO05D002375 3.4e-08 61.2 63 50.8
COL.COLO4_32323 Corchorus olitorius HOM05D007310 ORTHO05D002375 4.5e-08 60.8 55 56.4
AL3G45790 Arabidopsis lyrata HOM05D007310 ORTHO05D002375 5.8e-08 60.5 64 43.8
AUR62011722 Chenopodium quinoa HOM05D007310 ORTHO05D002375 5.8e-08 60.5 64 48.4
Medtr4g093820 Medicago truncatula HOM05D007310 ORTHO05D002375 5.8e-08 60.5 64 43.8
MBI06_g03314_MAGBIO Magnolia biondii HOM05D007310 ORTHO05D002375 7.6e-08 60.1 59 52.5
Lsat_1_v5_gn_5_108861 Lactuca sativa HOM05D007310 ORTHO05D002375 1.0e-07 59.7 64 50.0
THA.LOC104804411 Tarenaya hassleriana HOM05D007310 ORTHO05D002375 1.0e-07 59.7 56 58.9
Sp3g27450 Schrenkiella parvula HOM05D007310 ORTHO05D002375 1.7e-07 58.9 61 44.3
BcaB08g34551 Brassica carinata HOM05D007310 ORTHO05D002375 8.4e-07 56.6 59 44.1
EL10Ac9g21224 Beta vulgaris HOM05D007310 ORTHO05D002375 1.4e-06 55.8 62 45.2
Actinidia28038 Actinidia chinensis HOM05D007310 ORTHO05D002375 2.5e-06 55.1 41 68.3
Gohir.D02G199400 Gossypium hirsutum HOM05D007310 ORTHO05D002375 2.5e-06 55.1 53 56.6
PSO761G0222 Papaver somniferum HOM05D007310 ORTHO05D002375 3.2e-06 54.7 58 44.8
TAR376G0136 Trochodendron aralioides HOM05D007310 ORTHO05D002375 7.1e-06 53.5 66 51.5


User provided reference genes

Program Settings