Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048931 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 1.5e-59 232.6 114 100.0
Actinidia07713 Actinidia chinensis HOM05D004100 ORTHO05D004781 3.3e-35 151.8 80 95.0
Actinidia13907 Actinidia chinensis HOM05D004100 ORTHO05D004781 1.6e-34 149.4 79 94.9
Rhsim09G0171200 Rhododendron simsii HOM05D004100 ORTHO05D004781 6.8e-33 144.1 81 85.2
vmacro16617 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 2.6e-32 142.1 79 87.3
vmacro10075 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 1.7e-31 139.4 80 85.0
Rhsim03G0139100 Rhododendron simsii HOM05D004100 ORTHO05D004781 2.9e-31 138.7 88 78.4
Hma1.2p1_0026F.1_g016830 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 1.4e-30 136.3 78 83.3
Hma1.2p1_0026F.1_g016860 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 2.4e-30 135.6 78 82.1
Solyc08g082695.1 Solanum lycopersicum HOM05D004100 ORTHO05D004781 2.1e-29 132.5 80 78.8
Sopen08g030920 Solanum pennellii HOM05D004100 ORTHO05D004781 2.1e-29 132.5 80 78.8
SalBow1G1269 Salvia bowleyana HOM05D004100 ORTHO05D004781 3.5e-29 131.7 79 75.9
MSTRG.234 Avicennia marina HOM05D004100 ORTHO05D004781 1.0e-28 130.2 80 75.0
ECA238G3287 Erigeron canadensis HOM05D004100 ORTHO05D004781 1.7e-28 129.4 78 80.8
CAN.G567.29 Capsicum annuum HOM05D004100 ORTHO05D004781 3.9e-28 128.3 78 78.2
Oeu055822.1 Olea europaea HOM05D004100 ORTHO05D004781 3.9e-28 128.3 78 79.5
HanXRQChr07g0202251 Helianthus annuus HOM05D004100 ORTHO05D004781 5.1e-28 127.9 78 78.2
DCAR_027562 Daucus carota HOM05D004100 ORTHO05D004781 8.6e-28 127.1 78 78.2
Cc02_g07040 Coffea canephora HOM05D004100 ORTHO05D004781 1.1e-27 126.7 78 76.9
Lsat_1_v5_gn_1_35860 Lactuca sativa HOM05D004100 ORTHO05D004781 1.5e-27 126.3 75 80.0
GSVIVG01016389001 Vitis vinifera HOM05D004100 ORTHO05D004781 1.5e-27 126.3 88 67.0
Migut.I01038 Erythranthe guttata HOM05D004100 ORTHO05D004781 3.3e-27 125.2 78 74.4
CiPaw.02G189000 Carya illinoinensis HOM05D004100 ORTHO05D004781 1.2e-26 123.2 78 76.9
SalBow6G6247 Salvia bowleyana HOM05D004100 ORTHO05D004781 1.6e-26 122.9 74 73.0
unitig_0.g234 Utricularia gibba HOM05D004100 ORTHO05D004781 1.6e-26 122.9 78 75.6
GSVIVG01013495001 Vitis vinifera HOM05D004100 ORTHO05D004781 2.8e-26 122.1 78 75.6
CiPaw.01G294400 Carya illinoinensis HOM05D004100 ORTHO05D004781 3.6e-26 121.7 78 75.6
Eucgr.E00256 Eucalyptus grandis HOM05D004100 ORTHO05D004781 6.2e-26 120.9 79 73.4
Sed0020785 Sechium edule HOM05D004100 ORTHO05D004781 1.1e-25 120.2 78 74.4
TWI63G1110 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 1.1e-25 120.2 78 75.6
Manes.10G019000 Manihot esculenta HOM05D004100 ORTHO05D004781 1.4e-25 119.8 78 75.6
Migut.F01567 Erythranthe guttata HOM05D004100 ORTHO05D004781 1.8e-25 119.4 79 74.7
PSO384G2084 Papaver somniferum HOM05D004100 ORTHO05D004781 1.8e-25 119.4 78 76.9
PSO585G0025 Papaver somniferum HOM05D004100 ORTHO05D004781 1.8e-25 119.4 78 76.9
Lalb_Chr18g0052831 Lupinus albus HOM05D004100 ORTHO05D004781 3.1e-25 118.6 78 74.4
Eucgr.G03237 Eucalyptus grandis HOM05D004100 ORTHO05D004781 4.0e-25 118.2 80 73.8
Ciclev10010082m.g Citrus clementina HOM05D004100 ORTHO05D004781 6.9e-25 117.5 78 75.6
Thecc.10G028200 Theobroma cacao HOM05D004100 ORTHO05D004781 6.9e-25 117.5 81 71.6
FvH4_7g23790 Fragaria vesca HOM05D004100 ORTHO05D004781 8.9e-25 117.1 78 74.4
Glyma.11G226100 Glycine max HOM05D004100 ORTHO05D004781 8.9e-25 117.1 78 73.1
Lalb_Chr15g0084391 Lupinus albus HOM05D004100 ORTHO05D004781 8.9e-25 117.1 78 71.8
RcHm_v2.0_Chr1g0369131 Rosa chinensis HOM05D004100 ORTHO05D004781 8.9e-25 117.1 78 74.4
Sc11g0006410 Simmondsia chinensis HOM05D004100 ORTHO05D004781 8.9e-25 117.1 78 74.4
TWI74G1404 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 8.9e-25 117.1 78 76.9
Duzib114G0906 Durio zibethinus HOM05D004100 ORTHO05D004781 1.2e-24 116.7 78 74.4
Sed0001470 Sechium edule HOM05D004100 ORTHO05D004781 1.2e-24 116.7 78 73.1
TAR369G1064 Trochodendron aralioides HOM05D004100 ORTHO05D004781 1.2e-24 116.7 78 74.4
Potri.008G063000 Populus trichocarpa HOM05D004100 ORTHO05D004781 1.5e-24 116.3 78 75.6
Potri.010G194400 Populus trichocarpa HOM05D004100 ORTHO05D004781 1.5e-24 116.3 78 75.6
TWI53G1956 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 1.5e-24 116.3 78 75.6
Glyma.18G031200 Glycine max HOM05D004100 ORTHO05D004781 2.0e-24 115.9 78 71.8
CDE05G3529 Ceratophyllum demersum HOM05D004100 ORTHO05D004781 2.6e-24 115.5 78 74.4
Gohir.D04G065900 Gossypium hirsutum HOM05D004100 ORTHO05D004781 2.6e-24 115.5 78 73.1
Gorai.012G074300 Gossypium raimondii HOM05D004100 ORTHO05D004781 2.6e-24 115.5 78 73.1
Ca_05921_v3 Cicer arietinum L. HOM05D004100 ORTHO05D004781 3.4e-24 115.2 78 70.5
Gohir.A05G346300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 3.4e-24 115.2 78 73.1
CAN.G689.7 Capsicum annuum HOM05D004100 ORTHO05D004781 5.8e-24 114.4 78 67.9
Medtr5g081650 Medicago truncatula HOM05D004100 ORTHO05D004781 5.8e-24 114.4 78 70.5
COL.COLO4_25607 Corchorus olitorius HOM05D004100 ORTHO05D004781 7.6e-24 114.0 79 73.4
THA.LOC104805700 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 7.6e-24 114.0 78 73.1
TPR.G8047 Trifolium pratense HOM05D004100 ORTHO05D004781 7.6e-24 114.0 78 69.2
Psat2g035960 Pisum sativum HOM05D004100 ORTHO05D004781 9.9e-24 113.6 78 69.2
Manes.07G124300 Manihot esculenta HOM05D004100 ORTHO05D004781 1.7e-23 112.8 78 73.1
Manes.08G084000 Manihot esculenta HOM05D004100 ORTHO05D004781 1.7e-23 112.8 78 70.5
Medtr4g019160 Medicago truncatula HOM05D004100 ORTHO05D004781 1.7e-23 112.8 78 70.5
CSS0011416 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 2.2e-23 112.5 78 69.2
CSS0039007 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 2.2e-23 112.5 80 66.2
Phvul.010G006600 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 2.2e-23 112.5 78 70.5
Duzib128G1203 Durio zibethinus HOM05D004100 ORTHO05D004781 2.9e-23 112.1 78 71.8
Sabra10G0149500 Salix brachista HOM05D004100 ORTHO05D004781 2.9e-23 112.1 78 74.4
Aqoxy2G00841 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 3.8e-23 111.7 77 74.0
Gohir.D13G018200 Gossypium hirsutum HOM05D004100 ORTHO05D004781 3.8e-23 111.7 81 66.7
PGR044G2436 Punica granatum HOM05D004100 ORTHO05D004781 3.8e-23 111.7 78 70.5
CSS0037675 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 4.9e-23 111.3 74 70.3
Nn2g11332 Nelumbo nucifera HOM05D004100 ORTHO05D004781 4.9e-23 111.3 81 67.9
Phvul.001G239400 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 4.9e-23 111.3 78 67.9
Aqoxy6G01946 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 6.4e-23 110.9 78 74.4
Nn6g33749 Nelumbo nucifera HOM05D004100 ORTHO05D004781 6.4e-23 110.9 75 73.3
arahy.Tifrunner.gnm1.ann1.0J6FIX Arachis hypogaea HOM05D004100 ORTHO05D004781 8.4e-23 110.5 82 64.6
AL5G35090 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 1.1e-22 110.2 79 72.2
AT3G54085 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 1.1e-22 110.2 79 72.2
Duzib093G2045 Durio zibethinus HOM05D004100 ORTHO05D004781 1.1e-22 110.2 78 67.9
Glyma.01G109600 Glycine max HOM05D004100 ORTHO05D004781 1.1e-22 110.2 78 69.2
Glyma.03G074700 Glycine max HOM05D004100 ORTHO05D004781 1.1e-22 110.2 78 69.2
arahy.Tifrunner.gnm1.ann1.7Y0XMR Arachis hypogaea HOM05D004100 ORTHO05D004781 1.4e-22 109.8 78 67.9
Gohir.A13G017100 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.4e-22 109.8 78 67.9
Os09g0326850 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 1.4e-22 109.8 81 69.1
arahy.Tifrunner.gnm1.ann1.YUBK9J Arachis hypogaea HOM05D004100 ORTHO05D004781 1.9e-22 109.4 78 66.7
Glyma.14G063100 Glycine max HOM05D004100 ORTHO05D004781 1.9e-22 109.4 78 66.7
Lalb_Chr04g0250821 Lupinus albus HOM05D004100 ORTHO05D004781 1.9e-22 109.4 78 64.1
Aa31sc250G10 Aethionema arabicum HOM05D004100 ORTHO05D004781 2.4e-22 109.0 79 70.9
Duzib128G0469 Durio zibethinus HOM05D004100 ORTHO05D004781 2.4e-22 109.0 78 67.9
Glyma.02G253300 Glycine max HOM05D004100 ORTHO05D004781 2.4e-22 109.0 78 66.7
Gorai.013G020200 Gossypium raimondii HOM05D004100 ORTHO05D004781 2.4e-22 109.0 81 65.4
TPR.G8216 Trifolium pratense HOM05D004100 ORTHO05D004781 2.4e-22 109.0 78 67.9
arahy.Tifrunner.gnm1.ann1.97IM7W Arachis hypogaea HOM05D004100 ORTHO05D004781 3.2e-22 108.6 81 64.2
BcaB01g03736 Brassica carinata HOM05D000076 ORTHO05D001377 3.2e-22 108.6 79 69.6
BolC3t14861H Brassica oleracea HOM05D000076 ORTHO05D001377 3.2e-22 108.6 79 69.6
BraA03t11338Z Brassica rapa HOM05D000076 ORTHO05D001377 3.2e-22 108.6 79 69.6
Prupe.2G244600 Prunus persica HOM05D004100 ORTHO05D004781 3.2e-22 108.6 78 69.2
Sp4g20290 Schrenkiella parvula HOM05D004100 ORTHO05D004781 3.2e-22 108.6 79 69.6
Phvul.008G227500 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 4.2e-22 108.2 78 66.7
TAR623G1136 Trochodendron aralioides HOM05D004100 ORTHO05D004781 4.2e-22 108.2 78 69.2
CANSAT35G1936 Cannabis sativa HOM05D004100 ORTHO05D004781 5.4e-22 107.8 79 68.4
ClCG11G006500 Citrullus lanatus HOM05D004100 ORTHO05D004781 5.4e-22 107.8 73 71.2
Atru.chr8.2126 Acer truncatum HOM05D004100 ORTHO05D004781 7.1e-22 107.5 78 69.2
PGR031G0718 Punica granatum HOM05D004100 ORTHO05D004781 7.1e-22 107.5 81 66.7
Carub.0004s1994 Capsella rubella HOM05D004100 ORTHO05D004781 9.3e-22 107.1 79 69.6
Carub.0005s2067 Capsella rubella HOM05D004100 ORTHO05D004781 9.3e-22 107.1 79 69.6
CARHR132530 Cardamine hirsuta HOM05D004100 ORTHO05D004781 9.3e-22 107.1 79 69.6
Thhalv10017760m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 9.3e-22 107.1 79 69.6
A04p29120 Brassica napus HOM05D004100 ORTHO05D004781 1.2e-21 106.7 79 68.4
BolC4t28139H Brassica oleracea HOM05D000076 ORTHO05D001377 1.2e-21 106.7 79 68.4
BraA04t18382Z Brassica rapa HOM05D000076 ORTHO05D001377 1.2e-21 106.7 79 68.4
Gorai.012G110700 Gossypium raimondii HOM05D004100 ORTHO05D004781 1.2e-21 106.7 78 66.7
Nn2g13575 Nelumbo nucifera HOM05D004100 ORTHO05D004781 1.2e-21 106.7 79 65.8
Thecc.05G024300 Theobroma cacao HOM05D004100 ORTHO05D004781 1.2e-21 106.7 78 67.9
Os03g0331900 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 1.6e-21 106.3 81 66.7
BcaB02g09230 Brassica carinata HOM05D004100 ORTHO05D004781 2.1e-21 105.9 79 68.4
BraA05t19768Z Brassica rapa HOM05D004100 ORTHO05D004781 2.1e-21 105.9 79 68.4
Sabra16G0106200 Salix brachista HOM05D004100 ORTHO05D004781 2.1e-21 105.9 78 64.1
AL4G34950 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 3.5e-21 105.1 79 68.4
AT2G37975 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 3.5e-21 105.1 79 68.4
ECA247G3878 Erigeron canadensis HOM05D001920 ORTHO05D004895 3.5e-21 105.1 65 76.9
Potri.016G109500 Populus trichocarpa HOM05D004100 ORTHO05D004781 3.5e-21 105.1 75 66.7
Ciclev10013247m.g Citrus clementina HOM05D004100 ORTHO05D004781 4.6e-21 104.8 78 65.4
QL07p036366 Quercus lobata HOM05D004100 ORTHO05D004781 6.0e-21 104.4 77 66.2
CARHR150630 Cardamine hirsuta HOM05D004100 ORTHO05D004781 7.8e-21 104.0 79 68.4
CiPaw.09G204500 Carya illinoinensis HOM05D004100 ORTHO05D004781 7.8e-21 104.0 78 67.9
CARHR163970 Cardamine hirsuta HOM05D004100 ORTHO05D004781 1.3e-20 103.2 79 65.8
Gohir.D04G127700 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.3e-20 103.2 78 66.7
Sed0017691 Sechium edule HOM05D004100 ORTHO05D004781 1.7e-20 102.8 78 67.9
Aa31sc516G30 Aethionema arabicum HOM05D004100 ORTHO05D004781 2.3e-20 102.4 79 67.1
Lj6g0000528 Lotus japonicus HOM05D004100 ORTHO05D004781 2.3e-20 102.4 78 64.1
Ah.10g030410 Amaranthus hybridus HOM05D004100 ORTHO05D004781 5.1e-20 101.3 78 64.1
ClCG10G021700 Citrullus lanatus HOM05D004100 ORTHO05D004781 5.1e-20 101.3 78 61.5
A09p47070 Brassica napus HOM05D004100 ORTHO05D004781 8.7e-20 100.5 79 60.8
CiPaw.10G153500 Carya illinoinensis HOM05D004100 ORTHO05D004781 8.7e-20 100.5 78 65.4
MD12G1158300 Malus domestica HOM05D004100 ORTHO05D004781 8.7e-20 100.5 78 61.5
MD04G1144200 Malus domestica HOM05D004100 ORTHO05D004781 1.1e-19 100.1 83 57.8
THA.LOC104816861 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 3.3e-19 98.6 78 61.5
Cfa017271 Carpinus fangiana HOM05D004100 ORTHO05D004781 4.3e-19 98.2 78 64.1
Psat7g242160 Pisum sativum HOM05D004100 ORTHO05D004781 4.3e-19 98.2 82 61.0
C08p29320 Brassica napus HOM05D004100 ORTHO05D004781 5.6e-19 97.8 79 59.5
Ah.02g116480 Amaranthus hybridus HOM05D004100 ORTHO05D004781 7.3e-19 97.4 78 64.1
Ah.12g057400 Amaranthus hybridus HOM05D004100 ORTHO05D004781 7.3e-19 97.4 78 64.1
Mapoly0015s0116 Marchantia polymorpha HOM05D004100 ORTHO05D004781 1.3e-18 96.7 78 59.0
Thhalv10010931m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 2.1e-18 95.9 79 60.8
Gohir.A04G087300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 2.8e-18 95.5 76 60.5
Prupe.6G268700 Prunus persica HOM05D004100 ORTHO05D004781 3.6e-18 95.1 78 60.3
RcHm_v2.0_Chr3g0464081 Rosa chinensis HOM05D004100 ORTHO05D004781 4.8e-18 94.7 78 59.0
HPP92_003287 Vanilla planifolia HOM05D004100 ORTHO05D004781 4.8e-18 94.7 71 71.8
MELO3C009201.2 Cucumis melo HOM05D004100 ORTHO05D004781 8.1e-18 94.0 78 57.7
BcaNung06516 Brassica carinata HOM05D004100 ORTHO05D004781 1.1e-17 93.6 78 64.1
FvH4_6g12280 Fragaria vesca HOM05D004100 ORTHO05D004781 1.4e-17 93.2 78 57.7
FAN09G3480 Fragaria x ananassa HOM05D004100 ORTHO05D004781 2.4e-17 92.4 77 57.1
Actinidia27826 Actinidia chinensis HOM05D004100 ORTHO05D004781 5.3e-17 91.3 43 95.3
Sed0010532 Sechium edule HOM05D004100 ORTHO05D004781 4.5e-16 88.2 78 56.4
Prupe.6G268600 Prunus persica HOM05D004100 ORTHO05D004781 1.3e-15 86.7 77 57.1
AUR62013833 Chenopodium quinoa HOM05D004100 ORTHO05D004781 4.9e-15 84.7 72 63.9
Pp3c5_27310 Physcomitrium patens HOM05D004100 ORTHO05D004781 8.4e-15 84.0 78 52.6
FAN01G2433 Fragaria x ananassa HOM05D004100 ORTHO05D004781 1.4e-14 83.2 68 64.7
FAN03G0295 Fragaria x ananassa HOM05D004100 ORTHO05D004781 1.9e-14 82.8 52 75.0
Atru.chr8.2168 Acer truncatum HOM05D004100 ORTHO05D004781 5.4e-14 81.3 62 66.1
Pp3c6_2550 Physcomitrium patens HOM05D004100 ORTHO05D004781 5.4e-14 81.3 78 52.6
SMO117G0142 Selaginella moellendorffii HOM05D004100 ORTHO05D004781 5.4e-14 81.3 75 54.7
arahy.Tifrunner.gnm1.ann1.0IJH0T Arachis hypogaea HOM05D004100 ORTHO05D087279 3.0e-12 75.5 85 47.1
LjContig00141g0009471 Lotus japonicus HOM05D004100 ORTHO05D004781 4.3e-11 71.6 55 54.5
arahy.Tifrunner.gnm1.ann1.R21D2Y Arachis hypogaea HOM05D004100 ORTHO05D004781 1.8e-09 66.2 57 47.4
Cre06.g299750 Chlamydomonas reinhardtii HOM05D004100 ORTHO05D004781 4.0e-09 65.1 78 50.0
FAN06G1577 Fragaria x ananassa HOM05D004100 ORTHO05D004781 6.9e-09 64.3 41 75.6
PRCOL_00003613 Prasinoderma coloniale HOM05D004100 ORTHO05D004781 1.5e-08 63.2 80 47.5
BcaC02g11939 Brassica carinata HOM05D004100 ORTHO05D004781 2.0e-08 62.8 35 77.1
FAN06G2089 Fragaria x ananassa HOM05D004100 ORTHO05D004781 2.0e-08 62.8 39 76.9
MCO12G437 Micromonas commoda HOM05D004100 ORTHO05D004781 2.0e-08 62.8 80 45.0
AUR62037182 Chenopodium quinoa HOM05D004100 ORTHO05D004781 3.8e-07 58.5 73 46.6


User provided reference genes

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