Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 0.0e+00 1091.6 830 100.0
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 4.7e-248 861.7 819 85.2
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 7.0e-244 847.8 859 73.6
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 1.9e-241 839.7 826 83.4
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 9.1e-236 820.8 822 77.1
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 1.2e-235 820.5 825 80.6
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 2.5e-233 812.8 820 81.7
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 2.5e-233 812.8 821 74.7
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 4.2e-233 812.0 823 76.5
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 5.5e-233 811.6 826 75.7
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 1.8e-231 806.6 818 79.2
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 6.8e-231 804.7 824 78.8
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 2.6e-230 802.7 826 79.8
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 7.5e-230 801.2 806 84.1
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 9.8e-230 800.8 827 74.2
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 3.7e-229 798.9 803 80.2
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 3.5e-227 792.3 814 76.7
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 2.3e-226 789.6 820 77.7
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.9e-225 786.6 822 79.0
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 2.5e-225 786.2 824 79.1
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 5.6e-225 785.0 823 76.9
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 7.3e-225 784.6 827 70.9
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 1.6e-224 783.5 809 77.5
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 2.1e-224 783.1 819 75.9
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 3.6e-224 782.3 809 77.5
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.8e-223 780.0 827 76.2
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 2.6e-222 776.2 809 78.6
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 7.5e-222 774.6 801 70.9
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 1.9e-220 770.0 824 77.8
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.9e-220 770.0 827 78.7
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 2.4e-220 769.6 827 78.7
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 6.0e-219 765.0 818 78.7
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 8.6e-218 761.1 827 74.8
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 8.0e-216 754.6 821 77.1
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 1.4e-215 753.8 891 70.4
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 7.5e-214 748.0 837 74.1
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 1.1e-212 744.2 822 71.3
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 2.1e-211 740.0 809 79.5
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 6.0e-211 738.4 769 76.9
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 6.0e-211 738.4 817 77.1
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 7.8e-211 738.0 817 77.1
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 7.8e-211 738.0 803 74.5
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 3.9e-210 735.7 817 76.3
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 6.6e-210 734.9 820 76.2
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 6.6e-210 734.9 826 74.7
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 3.3e-209 732.6 828 76.1
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 3.3e-209 732.6 823 75.2
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 1.6e-208 730.3 814 74.4
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 2.1e-208 729.9 839 65.0
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 2.8e-208 729.6 816 77.0
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 8.1e-208 728.0 818 75.7
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.8e-207 726.9 800 77.6
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 2.0e-206 723.4 842 72.0
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 2.6e-206 723.0 802 75.8
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 1.7e-205 720.3 821 74.1
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 2.2e-205 719.9 823 74.8
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 4.9e-205 718.8 832 72.8
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 6.4e-205 718.4 820 74.8
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 8.3e-205 718.0 823 73.8
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 3.2e-204 716.1 826 74.1
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 4.1e-204 715.7 827 75.8
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 4.1e-204 715.7 808 74.4
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 1.0e-202 711.1 817 75.4
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 1.0e-202 711.1 801 69.0
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 3.9e-202 709.1 826 74.0
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 5.1e-202 708.8 803 73.5
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 6.6e-202 708.4 803 73.3
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 9.5e-201 704.5 815 72.8
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 1.6e-200 703.7 806 73.8
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 3.6e-200 702.6 822 73.5
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 1.1e-199 701.0 811 77.1
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 1.4e-199 700.7 820 73.9
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 2.4e-199 699.9 824 72.5
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 4.0e-199 699.1 812 75.6
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 2.6e-198 696.4 803 72.5
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 3.4e-198 696.0 809 75.2
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 1.7e-197 693.7 827 72.7
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 6.4e-197 691.8 824 71.8
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 8.4e-197 691.4 823 67.7
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 8.4e-197 691.4 818 74.8
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 8.7e-194 681.4 813 73.1
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 5.6e-193 678.7 807 73.1
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 1.8e-191 673.7 805 74.2
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 9.0e-191 671.4 813 69.4
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 2.7e-187 659.8 817 69.6
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 4.6e-187 659.1 819 70.6
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 1.7e-186 657.1 811 70.4
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 5.1e-186 655.6 819 68.4
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 1.1e-185 654.4 800 67.5
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 7.3e-185 651.7 772 74.5
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 1.6e-184 650.6 813 68.9
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 1.6e-184 650.6 801 72.5
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 1.4e-183 647.5 797 70.9
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 1.8e-183 647.1 820 68.5
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 9.9e-182 641.3 825 63.3
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 4.9e-181 639.0 824 69.5
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 8.4e-181 638.3 800 70.9
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 8.4e-181 638.3 820 60.4
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 2.4e-180 636.7 811 68.9
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 7.4e-177 625.2 802 69.3
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 3.7e-176 622.9 811 68.6
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 1.8e-175 620.5 822 64.5
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 4.0e-175 619.4 715 74.3
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 5.3e-175 619.0 821 65.2
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 3.4e-174 616.3 811 68.3
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 1.3e-173 614.4 781 61.7
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 2.2e-173 613.6 819 67.0
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 3.8e-173 612.8 819 69.4
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 1.4e-172 610.9 807 68.4
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 7.1e-172 608.6 811 68.2
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 7.1e-172 608.6 811 68.2
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 1.3e-170 604.4 811 67.8
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 1.3e-170 604.4 811 67.8
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 5.1e-170 602.4 811 67.3
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 8.7e-170 601.7 814 66.8
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 7.4e-169 598.6 835 66.3
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 1.3e-168 597.8 802 68.0
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 1.6e-168 597.4 811 67.6
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 8.2e-168 595.1 789 66.0
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 7.6e-166 588.6 811 67.2
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 3.9e-162 576.2 801 61.0
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 2.5e-161 573.5 752 62.4
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 1.6e-160 570.9 801 60.5
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 1.6e-160 570.9 801 60.5
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 6.3e-160 568.9 802 61.3
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 1.1e-159 568.2 803 61.8
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 1.8e-159 567.4 804 69.3
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 2.9e-157 560.1 791 64.7
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 7.9e-155 552.0 814 64.5
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 2.5e-153 547.0 818 56.7
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 4.8e-152 542.7 643 78.7
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.0e-149 535.0 741 61.8
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 2.2e-149 533.9 742 58.8
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 2.7e-147 526.9 815 62.5
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 6.1e-147 525.8 652 83.6
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 1.5e-145 521.2 802 58.6
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 3.1e-143 513.5 801 58.9
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 9.1e-143 511.9 800 57.6
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 5.9e-142 509.2 688 72.5
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 2.9e-141 506.9 800 57.8
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 1.8e-138 497.7 649 68.7
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 6.3e-136 489.2 802 57.0
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 6.3e-136 489.2 904 53.9
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 1.4e-135 488.0 781 50.2
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.6e-134 483.8 688 63.2
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.4e-127 461.5 910 50.3
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.2e-123 448.4 849 48.2
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 2.7e-118 430.6 598 66.1
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 1.1e-116 425.2 800 53.4
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.6e-115 421.4 859 55.3
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 3.4e-113 413.7 405 82.5
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 3.4e-113 413.7 929 45.5
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 5.0e-109 399.8 300 70.7
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 4.6e-102 376.7 322 74.2
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 4.9e-96 356.7 649 68.4
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 2.7e-94 350.9 649 61.9
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 9.5e-92 342.4 931 46.4
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 8.4e-88 329.3 395 55.4
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 2.7e-86 324.3 743 48.9
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 6.6e-85 319.7 396 54.3
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 3.5e-78 297.4 619 60.1
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 6.0e-78 296.6 1298 28.6
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 4.3e-76 290.4 304 87.2
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 9.6e-76 289.3 269 66.9
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 1.5e-57 228.8 151 74.8
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.1e-55 222.6 136 78.7
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 2.9e-48 198.0 227 51.5
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.8e-34 152.1 95 75.8
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 2.7e-30 138.3 88 79.5
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 5.7e-28 130.6 86 72.1
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 4.5e-25 120.9 119 55.5
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 2.2e-24 118.6 81 69.1
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 1.0e-21 109.8 66 86.4
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 2.6e-12 78.6 190 32.1
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 1.1e-10 73.2 63 55.6
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 4.1e-10 71.2 136 67.6
Cre12.g525600 Chlamydomonas reinhardtii HOM05D003722 ORTHO05D004589 8.5e-08 63.5 206 26.7
Sc09g0009810 Simmondsia chinensis HOM05D003722 ORTHO05D004589 2.1e-06 58.9 165 27.3


User provided reference genes

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