Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048901 Camellia sinensis var. sinensis HOM05D008022 ORTHO05D010147 1.3e-39 166.8 156 100.0
Potri.005G234601 Populus trichocarpa HOM05D008022 ORTHO05D010147 1.9e-25 119.8 61 78.7
Gohir.A05G188500 Gossypium hirsutum HOM05D008022 ORTHO05D010147 9.4e-25 117.5 55 87.3
Gohir.D05G191600 Gossypium hirsutum HOM05D008022 ORTHO05D010147 9.4e-25 117.5 55 87.3
Gorai.009G196900 Gossypium raimondii HOM05D008022 ORTHO05D010147 1.6e-24 116.7 55 87.3
CsaV3_7G006070 Cucumis sativus L. HOM05D008022 ORTHO05D010147 3.6e-24 115.5 67 70.1
CiPaw.08G062600 Carya illinoinensis HOM05D008022 ORTHO05D010147 7.9e-24 114.4 59 79.7
Atru.chr13.362 Acer truncatum HOM05D008022 ORTHO05D010147 1.4e-23 113.6 68 70.6
Cfa013902 Carpinus fangiana HOM05D002906 ORTHO05D003211 3.0e-23 112.5 59 79.7
Sed0002960 Sechium edule HOM05D008022 ORTHO05D010147 3.0e-23 112.5 54 79.6
CANSAT25G1466 Cannabis sativa HOM05D008022 ORTHO05D010147 1.5e-22 110.2 63 69.8
CiPaw.07G154400 Carya illinoinensis HOM05D008022 ORTHO05D010147 2.6e-22 109.4 60 76.7
Glyma.14G216600 Glycine max HOM05D008022 ORTHO05D010147 3.3e-22 109.0 70 62.9
Eucgr.F01845 Eucalyptus grandis HOM05D008022 ORTHO05D010147 1.3e-21 107.1 68 64.7
TWI12G0111 Tripterygium wilfordii HOM05D008022 ORTHO05D010147 1.3e-21 107.1 57 75.4
Nitab4.5_0000493g0010 Nicotiana tabacum HOM05D008022 ORTHO05D010147 2.2e-21 106.3 48 85.4
Glyma.17G255200 Glycine max HOM05D008022 ORTHO05D010147 6.3e-21 104.8 67 61.2
Manes.05G152650 Manihot esculenta HOM05D008022 ORTHO05D010147 6.3e-21 104.8 58 72.4
Medtr1g023270 Medicago truncatula HOM05D008022 ORTHO05D010147 6.3e-21 104.8 62 72.6
Phvul.001G009600 Phaseolus vulgaris HOM05D008022 ORTHO05D010147 8.2e-21 104.4 61 70.5
MD15G1017600 Malus domestica HOM05D008022 ORTHO05D010147 1.1e-20 104.0 61 67.2
Lj1g0009874 Lotus japonicus HOM05D008022 ORTHO05D010147 1.4e-20 103.6 68 64.7
Lalb_Chr08g0246011 Lupinus albus HOM05D008022 ORTHO05D010147 2.4e-20 102.8 55 74.5
Lalb_Chr22g0354471 Lupinus albus HOM05D008022 ORTHO05D010147 2.4e-20 102.8 61 67.2
Cc10_g02120 Coffea canephora HOM05D008022 ORTHO05D010147 5.3e-20 101.7 68 66.2
Lj5g0000972 Lotus japonicus HOM05D008022 ORTHO05D010147 5.3e-20 101.7 68 63.2
TPR.G40293 Trifolium pratense HOM05D008022 ORTHO05D010147 7.0e-20 101.3 47 87.2
VMungo1309G0619 Vigna mungo HOM05D002906 ORTHO05D003211 7.0e-20 101.3 62 62.9
Cpa.g.sc140.17 Carica papaya HOM05D008022 ORTHO05D010147 1.2e-19 100.5 61 68.9
Psat6g005360 Pisum sativum HOM05D008022 ORTHO05D010147 1.5e-19 100.1 48 81.2
MELO3C018685.2 Cucumis melo HOM05D008022 ORTHO05D010147 2.0e-19 99.8 64 60.9
FvH4_2g39010 Fragaria vesca HOM05D008022 ORTHO05D010147 1.0e-18 97.4 59 66.1
Medtr3g113080 Medicago truncatula HOM05D008022 ORTHO05D010147 2.9e-18 95.9 56 66.1
Duzib041G0305 Durio zibethinus HOM05D008022 ORTHO05D010147 3.8e-18 95.5 42 90.5
arahy.Tifrunner.gnm1.ann1.RV6KDM Arachis hypogaea HOM05D008022 ORTHO05D010147 5.0e-18 95.1 70 57.1
arahy.Tifrunner.gnm1.ann1.QUSF5W Arachis hypogaea HOM05D008022 ORTHO05D010147 6.5e-18 94.7 50 74.0
ECA236G3926 Erigeron canadensis HOM05D008022 ORTHO05D010147 1.9e-17 93.2 69 59.4
Lsat_1_v5_gn_7_91921 Lactuca sativa HOM05D008022 ORTHO05D010147 1.2e-16 90.5 72 59.7
Nn5g29204 Nelumbo nucifera HOM05D008022 ORTHO05D010147 2.7e-16 89.4 69 58.0
EL10Ac1g00558 Beta vulgaris HOM05D008022 ORTHO05D010147 3.6e-16 89.0 45 77.8
PGR031G0261 Punica granatum HOM05D008022 ORTHO05D010147 3.6e-16 89.0 43 76.7
arahy.Tifrunner.gnm1.ann1.0AGT2R Arachis hypogaea HOM05D008022 ORTHO05D010147 1.5e-14 83.6 45 68.9
FAN27G1447 Fragaria x ananassa HOM05D008022 ORTHO05D010147 1.3e-13 80.5 54 63.0
PSO541G2481 Papaver somniferum HOM05D008022 ORTHO05D010147 2.2e-13 79.7 45 66.7
Prupe.1G370900 Prunus persica HOM05D008022 ORTHO05D010147 1.1e-12 77.4 40 75.0
AL2G35530 Arabidopsis lyrata HOM05D008022 ORTHO05D010147 3.1e-12 75.9 40 70.0
HPP92_017807 Vanilla planifolia HOM05D008022 ORTHO05D010147 4.1e-12 75.5 42 64.3
A02p20010 Brassica napus HOM05D008022 ORTHO05D010147 7.0e-12 74.7 40 67.5
C02p34060 Brassica napus HOM05D008022 ORTHO05D010147 7.0e-12 74.7 40 67.5
BolC2t09304H Brassica oleracea HOM05D008022 ORTHO05D010147 7.0e-12 74.7 40 67.5
BraA02t07039Z Brassica rapa HOM05D008022 ORTHO05D010147 7.0e-12 74.7 40 67.5
BraA07t31648Z Brassica rapa HOM05D008022 ORTHO05D010147 1.2e-11 73.9 40 67.5
unitig_8.g4921 Utricularia gibba HOM05D008022 ORTHO05D010147 1.2e-11 73.9 51 56.9
BcaC08g45567 Brassica carinata HOM05D008022 ORTHO05D010147 2.6e-11 72.8 40 65.0
C06p32520 Brassica napus HOM05D008022 ORTHO05D010147 2.6e-11 72.8 40 65.0
BolC6t38374H Brassica oleracea HOM05D008022 ORTHO05D010147 2.6e-11 72.8 40 65.0
Carub.0002s2241 Capsella rubella HOM05D008022 ORTHO05D010147 2.6e-11 72.8 40 67.5
BcaB05g24920 Brassica carinata HOM05D008022 ORTHO05D010147 4.5e-11 72.0 40 65.0
BcaC08g47037 Brassica carinata HOM05D008022 ORTHO05D010147 4.5e-11 72.0 40 65.0
BcaC08g47337 Brassica carinata HOM05D008022 ORTHO05D010147 4.5e-11 72.0 40 65.0
BcaC08g47338 Brassica carinata HOM05D008022 ORTHO05D010147 4.5e-11 72.0 40 65.0
C06p49540 Brassica napus HOM05D008022 ORTHO05D010147 4.5e-11 72.0 40 65.0
BolC6t39993H Brassica oleracea HOM05D008022 ORTHO05D010147 4.5e-11 72.0 40 65.0
CARHR068950 Cardamine hirsuta HOM05D008022 ORTHO05D010147 5.9e-11 71.6 40 65.0
A07p41120 Brassica napus HOM05D008022 ORTHO05D010147 1.0e-10 70.9 40 65.0
Aqoxy6G02393 Aquilegia oxysepala HOM05D008022 ORTHO05D010147 1.3e-10 70.5 61 49.2
DCAR_017590 Daucus carota HOM05D000043 ORTHO05D000223 1.3e-10 70.5 57 54.4
BraA07t30517Z Brassica rapa HOM05D008022 ORTHO05D010147 3.8e-10 68.9 40 60.0
Phvul.009G014200 Phaseolus vulgaris HOM05D008022 ORTHO05D010147 1.1e-09 67.4 61 47.5
CDE02G3345 Ceratophyllum demersum HOM05D008022 ORTHO05D010147 2.7e-08 62.8 42 57.1
Dinv31809 Davidia involucrata HOM05D001222 ORTHO05D001195 1.2e-06 57.4 31 80.6
Aqoxy5G01499 Aquilegia oxysepala HOM05D008022 ORTHO05D010147 2.0e-06 56.6 39 64.1


User provided reference genes

Program Settings