Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048897 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 1.4e-157 559.7 297 100.0
CSS0002194 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 7.2e-151 537.3 297 93.6
CSS0010489 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 5.0e-144 514.6 282 93.6
vmacro03476 Vaccinium macrocarpon HOM05D004415 ORTHO05D005198 4.4e-140 501.5 297 85.9
Rhsim13G0126400 Rhododendron simsii HOM05D004415 ORTHO05D005198 1.1e-138 496.9 297 86.2
Hma1.2p1_0008F-2.1_g005810 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 3.5e-137 491.9 298 83.6
Actinidia29247 Actinidia chinensis HOM05D004415 ORTHO05D005198 7.8e-137 490.7 297 84.5
Dinv03287 Davidia involucrata HOM05D004415 ORTHO05D005198 4.3e-135 485.0 302 82.8
GSVIVG01037942001 Vitis vinifera HOM05D004415 ORTHO05D005198 4.7e-134 481.5 294 83.0
Cfa000755 Carpinus fangiana HOM05D004415 ORTHO05D005198 6.4e-131 471.1 297 80.5
Nn7g37839 Nelumbo nucifera HOM05D004415 ORTHO05D005198 1.1e-130 470.3 297 77.4
Ciclev10016110m.g Citrus clementina HOM05D004415 ORTHO05D005198 1.9e-130 469.5 297 79.5
TAR627G0414 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.7e-129 465.7 298 78.5
TAR627G1150 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.7e-129 465.7 298 78.5
FvH4_3g11520 Fragaria vesca HOM05D004415 ORTHO05D005198 8.6e-128 460.7 297 74.7
RcHm_v2.0_Chr5g0018471 Rosa chinensis HOM05D004415 ORTHO05D005198 3.3e-127 458.8 297 74.7
TWI38G1449 Tripterygium wilfordii HOM05D004415 ORTHO05D005198 9.5e-127 457.2 297 77.8
Atru.chr10.660 Acer truncatum HOM05D004415 ORTHO05D005198 2.1e-126 456.1 297 76.8
Duzib235G0717 Durio zibethinus HOM05D004415 ORTHO05D005198 3.6e-126 455.3 297 77.4
Thecc.06G005600 Theobroma cacao HOM05D004415 ORTHO05D005198 3.6e-126 455.3 297 78.8
PGR083G0443 Punica granatum HOM05D004415 ORTHO05D005198 1.1e-125 453.8 298 76.5
Phvul.009G218500 Phaseolus vulgaris HOM05D004415 ORTHO05D005198 1.4e-125 453.4 298 76.2
Oeu063146.1 Olea europaea HOM05D004415 ORTHO05D005198 1.8e-125 453.0 297 76.1
Sc17g0004090 Simmondsia chinensis HOM05D004415 ORTHO05D005198 1.8e-125 453.0 297 77.1
Gohir.A06G202400 Gossypium hirsutum HOM05D004415 ORTHO05D005198 2.3e-125 452.6 297 76.8
Lj1A1155G52 Lonicera japonica HOM05D004415 ORTHO05D005198 3.1e-125 452.2 297 77.4
MD00G1097300 Malus domestica HOM05D004415 ORTHO05D005198 4.0e-125 451.8 297 75.4
Gorai.010G247000 Gossypium raimondii HOM05D004415 ORTHO05D005198 5.2e-125 451.4 297 76.8
CiPaw.09G149000 Carya illinoinensis HOM05D004415 ORTHO05D005198 6.8e-125 451.1 297 78.1
Ca_02386_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 3.4e-124 448.7 297 76.1
Peaxi162Scf00195g00616 Petunia axillaris HOM05D004415 ORTHO05D005198 3.4e-124 448.7 294 75.5
Sopen02g018770 Solanum pennellii HOM05D004415 ORTHO05D005198 3.4e-124 448.7 294 75.5
FAN16G2189 Fragaria x ananassa HOM05D004415 ORTHO05D005198 4.4e-124 448.4 315 70.8
FAN21G2450 Fragaria x ananassa HOM05D004415 ORTHO05D005198 4.4e-124 448.4 315 70.8
Solyc02g069640.3 Solanum lycopersicum HOM05D004415 ORTHO05D005198 4.4e-124 448.4 294 75.2
PGSC0003DMG400021134 Solanum tuberosum HOM05D004415 ORTHO05D005198 4.4e-124 448.4 294 75.2
Potri.011G155200 Populus trichocarpa HOM05D004415 ORTHO05D005198 9.8e-124 447.2 297 75.4
Ah.01g002800 Amaranthus hybridus HOM05D004415 ORTHO05D005198 1.3e-123 446.8 295 75.3
Migut.M01938 Erythranthe guttata HOM05D004415 ORTHO05D005198 1.3e-123 446.8 297 74.4
MSTRG.16315 Avicennia marina HOM05D004415 ORTHO05D005198 2.2e-123 446.0 297 74.7
Cpa.g.sc173.46 Carica papaya HOM05D004415 ORTHO05D005198 2.9e-123 445.7 295 76.9
ClCG01G008890 Citrullus lanatus HOM05D004415 ORTHO05D005198 6.4e-123 444.5 297 76.1
Lalb_Chr11g0073471 Lupinus albus HOM05D004415 ORTHO05D005198 6.4e-123 444.5 297 75.8
SalBow8G0313 Salvia bowleyana HOM05D004415 ORTHO05D005198 8.3e-123 444.1 295 74.6
SalBow8G4844 Salvia bowleyana HOM05D004415 ORTHO05D005198 8.3e-123 444.1 295 74.6
Manes.16G062800 Manihot esculenta HOM05D004415 ORTHO05D005198 1.1e-122 443.7 297 76.1
VMungo1309G0873 Vigna mungo HOM05D004415 ORTHO05D005198 1.1e-122 443.7 297 74.7
CsaV3_1G037760 Cucumis sativus L. HOM05D004415 ORTHO05D005198 1.4e-122 443.4 297 75.4
Potri.001G440600 Populus trichocarpa HOM05D004415 ORTHO05D005198 3.2e-122 442.2 297 74.4
Sabra16G0298000 Salix brachista HOM05D004415 ORTHO05D005198 3.2e-122 442.2 305 73.4
CDE03G0179 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 5.4e-122 441.4 297 73.4
Medtr2g047110 Medicago truncatula HOM05D004415 ORTHO05D005198 5.4e-122 441.4 297 74.4
arahy.Tifrunner.gnm1.ann1.ZSFV9B Arachis hypogaea HOM05D004415 ORTHO05D005198 7.0e-122 441.0 297 74.1
Glyma.15G191200 Glycine max HOM05D004415 ORTHO05D005198 7.0e-122 441.0 297 75.1
CDE06G2804 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 2.1e-121 439.5 297 73.4
SGA_v2.0_scaffold298G47634 Striga asiatica HOM05D004415 ORTHO05D005198 2.1e-121 439.5 297 72.7
FAN25G0769 Fragaria x ananassa HOM05D004415 ORTHO05D005198 3.5e-121 438.7 315 69.5
COL.COLO4_22898 Corchorus olitorius HOM05D004415 ORTHO05D005198 4.6e-121 438.3 297 76.1
Prupe.4G102500 Prunus persica HOM05D004415 ORTHO05D005198 4.6e-121 438.3 297 76.1
arahy.Tifrunner.gnm1.ann1.UW0JAL Arachis hypogaea HOM05D004415 ORTHO05D005198 6.0e-121 438.0 297 74.1
QL05p063115 Quercus lobata HOM05D004415 ORTHO05D005198 6.0e-121 438.0 341 67.7
CANSAT35G0835 Cannabis sativa HOM05D004415 ORTHO05D005198 7.8e-121 437.6 295 74.2
Hund01093 Selenicereus undatus HOM05D004415 ORTHO05D005198 1.0e-120 437.2 297 73.4
Sabra16G0300000 Salix brachista HOM05D004415 ORTHO05D005198 1.3e-120 436.8 305 72.8
MSTRG.7566 Avicennia marina HOM05D004415 ORTHO05D005198 2.3e-120 436.0 297 74.1
Glyma.09G083100 Glycine max HOM05D004415 ORTHO05D005198 3.0e-120 435.6 297 75.8
Sed0021762 Sechium edule HOM05D004415 ORTHO05D005198 3.0e-120 435.6 298 74.8
Nitab4.5_0010415g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 3.9e-120 435.3 294 73.1
Nitab4.5_0007613g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 6.6e-120 434.5 294 73.1
PSO675G6508 Papaver somniferum HOM05D004415 ORTHO05D005198 1.1e-119 433.7 298 76.2
ATR1098G142 Amborella trichopoda HOM05D004415 ORTHO05D005198 3.3e-119 432.2 296 72.6
unitig_37.g12064 Utricularia gibba HOM05D004415 ORTHO05D005198 3.3e-119 432.2 297 73.7
Aqoxy4G00050 Aquilegia oxysepala HOM05D004415 ORTHO05D005198 4.3e-119 431.8 293 73.0
PSO541G2694 Papaver somniferum HOM05D004415 ORTHO05D005198 4.3e-119 431.8 298 76.2
Lalb_Chr08g0233111 Lupinus albus HOM05D004415 ORTHO05D005198 5.6e-119 431.4 297 71.7
Ca_17811_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 2.1e-118 429.5 299 71.9
Medtr8g089250 Medicago truncatula HOM05D004415 ORTHO05D005198 4.0e-117 425.2 297 70.7
TPR.G22904 Trifolium pratense HOM05D004415 ORTHO05D005198 8.9e-117 424.1 292 72.9
THA.LOC104812930 Tarenaya hassleriana HOM05D004415 ORTHO05D005198 1.2e-116 423.7 294 71.4
AUR62025006 Chenopodium quinoa HOM05D004415 ORTHO05D005198 9.9e-116 420.6 297 72.4
Sp7g18770 Schrenkiella parvula HOM05D004415 ORTHO05D005198 4.9e-115 418.3 295 71.2
Thhalv10025893m.g Eutrema salsugineum HOM05D004415 ORTHO05D005198 6.4e-115 417.9 295 70.8
CAN.G954.7 Capsicum annuum HOM05D004415 ORTHO05D005198 8.3e-115 417.5 281 73.3
AUR62006530 Chenopodium quinoa HOM05D004415 ORTHO05D005198 1.4e-114 416.8 297 71.4
Lalb_Chr07g0185681 Lupinus albus HOM05D004415 ORTHO05D005198 1.9e-114 416.4 282 73.8
A01p12100 Brassica napus HOM05D004415 ORTHO05D005198 3.2e-114 415.6 295 70.2
C01p14410 Brassica napus HOM05D004415 ORTHO05D005198 3.2e-114 415.6 295 70.2
BolC1t01398H Brassica oleracea HOM05D004415 ORTHO05D005198 3.2e-114 415.6 295 70.2
arahy.Tifrunner.gnm1.ann1.Z0R64B Arachis hypogaea HOM05D004415 ORTHO05D005198 5.4e-114 414.8 297 69.7
ECA236G1935 Erigeron canadensis HOM05D004415 ORTHO05D005198 9.2e-114 414.1 297 69.7
Carub.0007s2075 Capsella rubella HOM05D004415 ORTHO05D005198 1.2e-113 413.7 295 69.2
CARHR227240 Cardamine hirsuta HOM05D004415 ORTHO05D005198 1.6e-113 413.3 295 69.5
TPR.G6264 Trifolium pratense HOM05D004415 ORTHO05D005198 1.6e-113 413.3 298 69.5
AT4G20410 Arabidopsis thaliana HOM05D004415 ORTHO05D005198 2.1e-113 412.9 295 68.8
Psat1g018760 Pisum sativum HOM05D004415 ORTHO05D005198 2.1e-113 412.9 297 70.0
AL7G33480 Arabidopsis lyrata HOM05D004415 ORTHO05D005198 2.7e-113 412.5 295 69.2
arahy.Tifrunner.gnm1.ann1.5MZ6ZS Arachis hypogaea HOM05D004415 ORTHO05D005198 2.7e-113 412.5 297 69.7
Eucgr.D01029 Eucalyptus grandis HOM05D004415 ORTHO05D005198 3.5e-113 412.1 262 78.2
BraA01t01153Z Brassica rapa HOM05D004415 ORTHO05D005198 4.6e-113 411.8 295 69.8
HPP92_013188 Vanilla planifolia HOM05D004415 ORTHO05D005198 2.3e-112 409.5 297 70.0
Os04g0618500 Oryza sativa ssp. japonica HOM05D004415 ORTHO05D005198 3.0e-112 409.1 296 68.6
Gorai.009G116300 Gossypium raimondii HOM05D004415 ORTHO05D005198 6.6e-112 407.9 295 70.5
Sabra11G0144600 Salix brachista HOM05D004415 ORTHO05D005198 3.3e-111 405.6 274 74.1
EL10Ac9g22486 Beta vulgaris HOM05D004415 ORTHO05D005198 4.3e-111 405.2 285 70.5
Sed0009944 Sechium edule HOM05D004415 ORTHO05D005198 5.6e-111 404.8 277 74.7
Lsat_1_v5_gn_7_31101 Lactuca sativa HOM05D004415 ORTHO05D005198 4.7e-110 401.7 297 69.0
Gohir.D06G219300 Gossypium hirsutum HOM05D004415 ORTHO05D005198 1.7e-107 393.3 250 78.4
Aa31LG6G2800 Aethionema arabicum HOM05D004415 ORTHO05D005198 1.9e-106 389.8 295 66.4
Hma1.2p1_0008F-2.1_g005800 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 1.6e-102 376.7 219 84.0
Haze_05963 Corylus avellana HOM05D004415 ORTHO05D005198 2.8e-102 375.9 297 68.0
Gohir.D05G112100 Gossypium hirsutum HOM05D004415 ORTHO05D005198 1.4e-101 373.6 320 64.1
AagrBONN_evm.TU.Sc2ySwM_368.1346 Anthoceros agrestis HOM05D004415 ORTHO05D005198 6.6e-96 354.8 294 58.8
Cc09_g04060 Coffea canephora HOM05D004415 ORTHO05D005198 7.3e-95 351.3 223 78.9
HanXRQChr04g0119541 Helianthus annuus HOM05D004415 ORTHO05D005198 9.0e-93 344.4 223 77.6
Lj6g0004921 Lotus japonicus HOM05D004415 ORTHO05D005198 1.5e-92 343.6 297 63.6
MELO3C021810.2 Cucumis melo HOM05D004415 ORTHO05D005198 3.2e-90 335.9 223 76.7
Mapoly0008s0129 Marchantia polymorpha HOM05D004415 ORTHO05D005198 4.6e-89 332.0 294 56.8
arahy.Tifrunner.gnm1.ann1.QWIY8B Arachis hypogaea HOM05D004415 ORTHO05D005198 2.8e-86 322.8 279 60.9
AagrBONN_evm.TU.Sc2ySwM_362.579 Anthoceros agrestis HOM05D004415 ORTHO05D005198 4.8e-86 322.0 294 55.8
SMO228G0081 Selaginella moellendorffii HOM05D004415 ORTHO05D005198 1.4e-85 320.5 262 59.5
AagrBONN_evm.TU.Sc2ySwM_368.3355 Anthoceros agrestis HOM05D004415 ORTHO05D005198 2.0e-84 316.6 294 54.8
Pp3c19_23300 Physcomitrium patens HOM05D004415 ORTHO05D005198 1.7e-83 313.5 290 56.2
Zm00001eb431060 Zea mays HOM05D004415 ORTHO05D005198 1.1e-82 310.8 215 68.8
CBR_g24190 Chara braunii HOM05D004415 ORTHO05D005198 1.3e-80 303.9 295 53.9
CDE03G0221 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 1.3e-78 297.4 274 59.9
Zm00001eb410240 Zea mays HOM05D004415 ORTHO05D005198 3.4e-76 289.3 220 63.6
Duzib043G0003 Durio zibethinus HOM05D004415 ORTHO05D005198 4.8e-70 268.9 176 79.0
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 2.6e-68 263.1 231 60.6
CBR_g48904 Chara braunii HOM05D004415 ORTHO05D005198 3.8e-67 259.2 256 51.6
arahy.Tifrunner.gnm1.ann1.6K3MVX Arachis hypogaea HOM05D004415 ORTHO05D005198 1.1e-66 257.7 223 60.5
MBI02_g43828_MAGBIO Magnolia biondii HOM05D004415 ORTHO05D005198 2.9e-59 233.0 150 78.7
Gohir.A05G111501 Gossypium hirsutum HOM05D004415 ORTHO05D005198 1.9e-58 230.3 214 59.8
arahy.Tifrunner.gnm1.ann1.W2C20P Arachis hypogaea HOM05D004415 ORTHO05D005198 1.0e-56 224.6 149 72.5
SEGI_29507 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 2.8e-54 216.5 162 66.0
Zm00001eb072080 Zea mays HOM05D004415 ORTHO05D005198 3.8e-51 206.1 143 65.0
TAR627G0753 Trochodendron aralioides HOM05D004415 ORTHO05D005198 8.5e-51 204.9 135 74.1
MCO11G422 Micromonas commoda HOM05D004415 ORTHO05D005198 3.5e-44 183.0 266 38.0
Oeu063144.1 Olea europaea HOM05D004415 ORTHO05D005198 5.0e-43 179.1 182 54.9
PRCOL_00005341 Prasinoderma coloniale HOM05D004415 ORTHO05D005198 1.0e-40 171.4 307 39.4
VMungo0464G1344 Vigna mungo HOM05D004415 ORTHO05D005198 9.1e-37 158.3 106 74.5
arahy.Tifrunner.gnm1.ann1.NJ63RV Arachis hypogaea HOM05D004415 ORTHO05D005198 7.7e-36 155.2 135 60.0
SEGI_22365 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 2.0e-31 140.6 107 70.1
Zm00001eb266710 Zea mays HOM05D004415 ORTHO05D005198 2.4e-29 133.7 99 60.6
Cre08.g385700 Chlamydomonas reinhardtii HOM05D004415 ORTHO05D005198 1.3e-27 127.9 270 33.0
arahy.Tifrunner.gnm1.ann1.YAAB6X Arachis hypogaea HOM05D004415 ORTHO05D005198 2.8e-25 120.2 132 52.3
FvH4_3g11480 Fragaria vesca HOM05D004415 ORTHO05D005198 1.3e-22 111.3 81 67.9
arahy.Tifrunner.gnm1.ann1.479FYN Arachis hypogaea HOM05D004415 ORTHO05D005198 6.1e-17 92.4 116 48.3
SGA_v2.0_scaffold298G47629 Striga asiatica HOM05D004415 ORTHO05D005198 5.2e-16 89.4 128 44.5
Cc09_g04070 Coffea canephora HOM05D004415 ORTHO05D005198 6.8e-16 89.0 65 67.7
arahy.Tifrunner.gnm1.ann1.LII2ER Arachis hypogaea HOM05D004415 ORTHO05D005198 6.0e-12 75.9 103 44.7
arahy.Tifrunner.gnm1.ann1.8SCZ96 Arachis hypogaea HOM05D004415 ORTHO05D005198 1.5e-10 71.2 103 42.7
HanXRQChr04g0119531 Helianthus annuus HOM05D004415 ORTHO05D005198 6.2e-09 65.9 39 76.9
VMungo0331G0484 Vigna mungo HOM05D003730 ORTHO05D005198 6.8e-08 62.4 45 64.4
BcaB03g15995 Brassica carinata HOM05D004415 ORTHO05D005198 8.9e-08 62.0 102 42.2
GSVIVG01003362001 Vitis vinifera HOM05D004415 ORTHO05D005198 1.2e-07 61.6 52 59.6
GSVIVG01005645001 Vitis vinifera HOM05D004415 ORTHO05D005198 1.3e-06 58.2 52 55.8
GSVIVG01032305001 Vitis vinifera HOM05D004415 ORTHO05D005198 1.3e-06 58.2 52 55.8
CSS0023282 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 1.7e-06 57.8 49 71.4
CSS0041550 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D113305 1.7e-06 57.8 35 88.6
VMungo0251G3417 Vigna mungo HOM05D004415 ORTHO05D005198 8.3e-06 55.5 53 52.8


User provided reference genes

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