Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 5.3e-47 190.7 95 100.0
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 6.7e-42 173.7 109 84.4
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.5e-41 172.6 109 83.5
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 4.1e-39 164.5 109 79.8
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 9.1e-39 163.3 107 78.5
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.2e-38 162.9 108 77.8
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 3.4e-38 161.4 107 75.7
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 3.4e-38 161.4 107 77.6
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 5.9e-38 160.6 107 77.6
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 2.9e-37 158.3 109 78.0
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 5.0e-37 157.5 107 76.6
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 5.0e-37 157.5 107 76.6
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 3.2e-36 154.8 103 78.6
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 3.2e-36 154.8 103 79.6
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 3.2e-36 154.8 108 75.0
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 5.5e-36 154.1 109 71.6
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 9.4e-36 153.3 108 74.1
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 9.4e-36 153.3 101 78.2
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 1.6e-35 152.5 107 73.8
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 3.6e-35 151.4 107 72.9
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 4.7e-35 151.0 109 72.5
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 6.1e-35 150.6 106 75.5
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 6.1e-35 150.6 108 71.3
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 1.0e-34 149.8 107 74.8
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 1.0e-34 149.8 108 73.1
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 1.4e-34 149.4 107 72.0
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 1.4e-34 149.4 107 74.8
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 1.4e-34 149.4 109 72.5
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 1.8e-34 149.1 106 72.6
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 2.3e-34 148.7 109 72.5
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 3.0e-34 148.3 109 70.6
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 3.0e-34 148.3 106 72.6
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 3.0e-34 148.3 104 74.0
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 3.0e-34 148.3 104 74.0
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 3.0e-34 148.3 104 74.0
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 3.0e-34 148.3 106 73.6
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 3.0e-34 148.3 106 72.6
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 3.9e-34 147.9 109 70.6
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 3.9e-34 147.9 109 70.6
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 3.9e-34 147.9 109 70.6
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 3.9e-34 147.9 109 70.6
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 3.9e-34 147.9 109 70.6
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 6.7e-34 147.1 106 70.8
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 8.8e-34 146.7 104 73.1
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 8.8e-34 146.7 104 73.1
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 8.8e-34 146.7 107 72.9
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.5e-33 146.0 109 69.7
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.5e-33 146.0 109 70.6
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 2.0e-33 145.6 104 74.0
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 2.6e-33 145.2 107 70.1
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 2.6e-33 145.2 109 69.7
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 3.3e-33 144.8 108 69.4
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 3.3e-33 144.8 106 71.7
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 3.3e-33 144.8 107 68.2
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 4.4e-33 144.4 110 70.9
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 4.4e-33 144.4 107 72.0
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 4.4e-33 144.4 109 69.7
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 5.7e-33 144.1 108 66.7
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 5.7e-33 144.1 109 68.8
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 5.7e-33 144.1 107 70.1
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 7.4e-33 143.7 103 70.9
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 1.7e-32 142.5 109 67.9
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 1.7e-32 142.5 109 67.9
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 1.7e-32 142.5 103 70.9
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 2.2e-32 142.1 107 64.5
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 2.2e-32 142.1 109 69.7
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 2.2e-32 142.1 104 72.1
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 2.8e-32 141.7 109 68.8
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 2.8e-32 141.7 109 68.8
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 3.7e-32 141.4 107 67.3
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 3.7e-32 141.4 109 68.8
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 3.7e-32 141.4 109 67.9
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 3.7e-32 141.4 109 68.8
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 4.8e-32 141.0 108 68.5
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 6.3e-32 140.6 107 67.3
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 1.1e-31 139.8 121 64.5
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 1.4e-31 139.4 109 66.1
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 1.4e-31 139.4 103 69.9
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 1.8e-31 139.0 107 67.3
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 1.8e-31 139.0 109 66.1
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 1.8e-31 139.0 108 65.7
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 1.8e-31 139.0 109 67.0
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 2.4e-31 138.7 101 69.3
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 2.4e-31 138.7 109 67.9
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 2.4e-31 138.7 109 67.0
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 3.1e-31 138.3 107 68.2
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 4.1e-31 137.9 106 68.9
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 9.1e-31 136.7 109 65.1
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 9.1e-31 136.7 107 65.4
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 9.1e-31 136.7 109 66.1
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 1.2e-30 136.3 98 72.4
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 1.2e-30 136.3 101 68.3
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 1.2e-30 136.3 109 67.9
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 1.6e-30 136.0 103 67.0
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 2.0e-30 135.6 109 65.1
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 2.6e-30 135.2 106 64.2
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 5.9e-30 134.0 111 65.8
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 7.7e-30 133.7 109 64.2
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 7.7e-30 133.7 98 71.4
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 1.0e-29 133.3 101 69.3
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 1.0e-29 133.3 98 68.4
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 1.7e-29 132.5 109 62.4
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 1.7e-29 132.5 99 69.7
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 2.2e-29 132.1 100 67.0
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 2.9e-29 131.7 109 63.3
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 2.9e-29 131.7 107 65.4
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 2.9e-29 131.7 98 71.4
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 5.0e-29 131.0 98 68.4
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 8.5e-29 130.2 98 70.4
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 1.1e-28 129.8 107 60.7
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 1.1e-28 129.8 98 67.3
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 1.1e-28 129.8 101 68.3
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 1.9e-28 129.0 107 60.7
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 2.5e-28 128.6 107 60.7
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 2.5e-28 128.6 107 60.7
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 2.5e-28 128.6 95 74.7
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 4.2e-28 127.9 105 61.9
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 5.5e-28 127.5 107 59.8
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 7.2e-28 127.1 107 60.7
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 9.4e-28 126.7 107 59.8
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 9.4e-28 126.7 107 59.8
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 9.4e-28 126.7 107 61.7
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 3.6e-27 124.8 107 59.8
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 6.1e-27 124.0 107 58.9
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 1.4e-26 122.9 98 63.3
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 1.8e-26 122.5 107 58.9
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 2.3e-26 122.1 107 57.9
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 2.3e-26 122.1 108 59.3
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 2.3e-26 122.1 108 59.3
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 2.3e-26 122.1 108 59.3
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 2.3e-26 122.1 108 59.3
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 7.5e-25 117.1 107 57.0
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 1.8e-23 112.5 99 59.6
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 5.3e-23 110.9 99 56.6
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 4.5e-22 107.8 103 55.3
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 3.8e-21 104.8 94 66.0
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 1.1e-20 103.2 98 53.1
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 5.5e-20 100.9 86 62.8
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 2.1e-19 99.0 81 61.7
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 3.6e-19 98.2 55 85.5
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 1.8e-18 95.9 107 53.3
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 1.5e-17 92.8 120 45.0
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 1.5e-17 92.8 96 54.2
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 2.0e-17 92.4 93 53.8
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 2.6e-17 92.0 66 72.7
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 1.3e-16 89.7 88 51.1
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 1.3e-16 89.7 95 52.6
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 2.8e-16 88.6 53 83.0
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 3.7e-16 88.2 80 57.5
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 3.7e-16 88.2 55 78.2
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 1.8e-15 85.9 54 79.6
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 3.1e-15 85.1 55 78.2
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 9.1e-15 83.6 87 51.7
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.6e-14 82.8 65 70.8
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 4.5e-14 81.3 97 48.5
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 1.3e-13 79.7 75 62.7
Nn2g15167 Nelumbo nucifera HOM05D004421 ORTHO05D005227 3.2e-12 75.1 46 82.6
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 2.1e-11 72.4 86 46.5
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 5.2e-10 67.8 38 81.6
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 6.3e-08 60.8 76 51.3


User provided reference genes

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