Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048815 Camellia sinensis var. sinensis HOM05D004999 ORTHO05D007513 4.5e-261 904.0 456 100.0
Rhsim06G0021900 Rhododendron simsii HOM05D004999 ORTHO05D007513 1.0e-212 743.4 459 82.4
Actinidia15416 Actinidia chinensis HOM05D004999 ORTHO05D007513 2.1e-210 735.7 455 82.2
vmacro21722 Vaccinium macrocarpon HOM05D004999 ORTHO05D007513 3.5e-205 718.4 525 72.8
Dinv39509 Davidia involucrata HOM05D004999 ORTHO05D007513 1.2e-202 709.9 462 79.9
Lj4A25T52 Lonicera japonica HOM05D004999 ORTHO05D007513 6.0e-189 664.5 456 75.2
GSVIVG01009891001 Vitis vinifera HOM05D004999 ORTHO05D007513 5.8e-184 647.9 459 73.2
Thecc.08G043100 Theobroma cacao HOM05D004999 ORTHO05D007513 4.9e-183 644.8 447 73.2
Gorai.009G195100 Gossypium raimondii HOM05D004999 ORTHO05D007513 7.1e-182 641.0 449 70.6
Dinv31836 Davidia involucrata HOM05D004999 ORTHO05D007513 3.5e-181 638.6 458 74.7
Gohir.A05G186900 Gossypium hirsutum HOM05D004999 ORTHO05D007513 1.3e-180 636.7 449 70.2
Gohir.D05G189800 Gossypium hirsutum HOM05D004999 ORTHO05D007513 1.8e-180 636.3 449 70.2
Atru.chr13.305 Acer truncatum HOM05D004999 ORTHO05D007513 3.3e-179 632.1 448 70.3
TAR381G0667 Trochodendron aralioides HOM05D004999 ORTHO05D007513 5.6e-179 631.3 483 68.5
Duzib041G0279 Durio zibethinus HOM05D004999 ORTHO05D007513 8.2e-178 627.5 451 70.7
Manes.05G148301 Manihot esculenta HOM05D004999 ORTHO05D007513 4.5e-176 621.7 426 73.9
TWI56G0255 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 1.3e-175 620.2 449 69.9
QL02p011429 Quercus lobata HOM05D004999 ORTHO05D007513 2.9e-175 619.0 476 69.3
Cfa013940 Carpinus fangiana HOM05D004999 ORTHO05D007513 4.9e-175 618.2 442 71.9
Duzib093G1482 Durio zibethinus HOM05D004999 ORTHO05D007513 1.4e-174 616.7 450 71.6
Potri.002G023300 Populus trichocarpa HOM05D004999 ORTHO05D007513 1.9e-174 616.3 449 71.0
Ciclev10001119m.g Citrus clementina HOM05D004999 ORTHO05D007513 2.1e-173 612.8 450 70.2
Prupe.1G366700 Prunus persica HOM05D004999 ORTHO05D007513 2.7e-173 612.5 446 69.3
CiPaw.08G065700 Carya illinoinensis HOM05D004999 ORTHO05D007513 3.0e-172 609.0 464 69.2
RcHm_v2.0_Chr6g0302731 Rosa chinensis HOM05D004999 ORTHO05D007513 6.7e-172 607.8 450 67.8
Ca_13413_v3 Cicer arietinum L. HOM05D004999 ORTHO05D007513 5.7e-171 604.7 441 69.8
FvH4_2g38570 Fragaria vesca HOM05D004999 ORTHO05D007513 1.3e-170 603.6 451 67.6
Haze_22624 Corylus avellana HOM05D004999 ORTHO05D007513 1.6e-170 603.2 487 65.7
FAN27G0904 Fragaria x ananassa HOM05D004999 ORTHO05D007513 1.2e-168 597.0 451 67.2
Sc02g0008530 Simmondsia chinensis HOM05D004999 ORTHO05D007513 1.5e-168 596.7 442 68.6
CAN.G311.21 Capsicum annuum HOM05D004999 ORTHO05D007513 5.9e-168 594.7 451 69.0
SGA_v2.0_scaffold11G05913 Striga asiatica HOM05D004999 ORTHO05D007513 5.9e-168 594.7 453 67.5
Lalb_Chr24g0398721 Lupinus albus HOM05D004999 ORTHO05D007513 3.8e-167 592.0 445 68.8
MD08G1013700 Malus domestica HOM05D004999 ORTHO05D007513 3.8e-167 592.0 448 68.3
TWI36G1418 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 6.5e-167 591.3 450 66.7
Solyc04g081360.3 Solanum lycopersicum HOM05D004999 ORTHO05D007513 1.1e-166 590.5 448 69.0
Aqoxy5G01776 Aquilegia oxysepala HOM05D004999 ORTHO05D007513 3.2e-166 589.0 498 61.6
Cc10_g01760 Coffea canephora HOM05D004999 ORTHO05D007513 3.2e-166 589.0 449 68.4
Sopen04g034980 Solanum pennellii HOM05D004999 ORTHO05D007513 7.2e-166 587.8 448 68.8
THA.LOC104806888 Tarenaya hassleriana HOM05D004999 ORTHO05D007513 1.2e-165 587.0 446 68.4
PGR083G2044 Punica granatum HOM05D004999 ORTHO05D007513 1.6e-165 586.6 451 66.3
MD15G1013300 Malus domestica HOM05D004999 ORTHO05D007513 2.1e-165 586.3 436 68.1
PGSC0003DMG400003779 Solanum tuberosum HOM05D004999 ORTHO05D007513 6.1e-165 584.7 449 68.6
CsaV3_2G029460 Cucumis sativus L. HOM05D004999 ORTHO05D007513 1.8e-164 583.2 448 68.1
Nn1g05879 Nelumbo nucifera HOM05D004999 ORTHO05D007513 6.7e-164 581.3 443 67.7
MELO3C011005.2 Cucumis melo HOM05D004999 ORTHO05D007513 8.7e-164 580.9 447 68.0
DCAR_017472 Daucus carota HOM05D004999 ORTHO05D007513 1.1e-163 580.5 442 67.9
arahy.Tifrunner.gnm1.ann1.A5JBZH Arachis hypogaea HOM05D004999 ORTHO05D007513 1.5e-163 580.1 441 66.4
Phvul.001G007200 Phaseolus vulgaris HOM05D004999 ORTHO05D007513 1.5e-163 580.1 464 67.0
Glyma.17G257600 Glycine max HOM05D004999 ORTHO05D007513 2.5e-163 579.3 463 66.5
Medtr1g024920 Medicago truncatula HOM05D004999 ORTHO05D007513 5.7e-163 578.2 455 67.7
VMungo0647G0227 Vigna mungo HOM05D004999 ORTHO05D007513 5.7e-163 578.2 463 65.4
Lj5g0025890 Lotus japonicus HOM05D004999 ORTHO05D007513 7.4e-163 577.8 447 66.2
arahy.Tifrunner.gnm1.ann1.BI3E2S Arachis hypogaea HOM05D004999 ORTHO05D007513 1.3e-162 577.0 441 66.2
SalBow7G4700 Salvia bowleyana HOM05D004999 ORTHO05D007513 3.7e-162 575.5 441 67.3
ClCG08G014370 Citrullus lanatus HOM05D004999 ORTHO05D007513 6.9e-161 571.2 453 66.2
FAN15G0085 Fragaria x ananassa HOM05D004999 ORTHO05D007513 1.2e-160 570.5 465 64.7
Migut.C00822 Erythranthe guttata HOM05D004999 ORTHO05D007513 4.5e-160 568.5 444 64.9
Lj5g0016888 Lotus japonicus HOM05D004999 ORTHO05D007513 4.5e-160 568.5 432 67.4
Sed0007289 Sechium edule HOM05D004999 ORTHO05D007513 4.5e-160 568.5 446 66.6
EL10Ac6g14553 Beta vulgaris HOM05D004999 ORTHO05D007513 1.7e-159 566.6 450 66.0
ECA238G1075 Erigeron canadensis HOM05D004999 ORTHO05D007513 2.9e-159 565.8 464 64.4
TPR.G30999 Trifolium pratense HOM05D004999 ORTHO05D007513 3.8e-159 565.5 443 67.5
Nitab4.5_0001540g0030 Nicotiana tabacum HOM05D004999 ORTHO05D007513 8.5e-159 564.3 451 66.7
Oeu020873.1 Olea europaea HOM05D004999 ORTHO05D007513 8.5e-159 564.3 445 68.3
Carub.0004s2839 Capsella rubella HOM05D004999 ORTHO05D007513 4.8e-154 548.5 445 62.9
Sp4g27780 Schrenkiella parvula HOM05D004999 ORTHO05D007513 1.8e-153 546.6 453 62.0
PSO700G0267 Papaver somniferum HOM05D004999 ORTHO05D007513 6.9e-153 544.7 471 61.4
CANSAT01G2959 Cannabis sativa HOM05D004999 ORTHO05D007513 9.1e-153 544.3 449 63.7
Eucgr.F01642 Eucalyptus grandis HOM05D004999 ORTHO05D007513 3.4e-152 542.3 418 66.7
PSO170G1336 Papaver somniferum HOM05D004999 ORTHO05D007513 4.5e-152 542.0 469 61.4
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 5.9e-152 541.6 417 66.9
AT2G45730 Arabidopsis thaliana HOM05D004999 ORTHO05D007513 7.7e-152 541.2 439 61.7
Thhalv10001448m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 1.3e-151 540.4 446 62.3
Peaxi162Scf00438g00629 Petunia axillaris HOM05D004999 ORTHO05D007513 1.7e-151 540.0 450 64.4
BraA04t18860Z Brassica rapa HOM05D004999 ORTHO05D007513 2.9e-151 539.3 446 61.0
AL4G44920 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 5.0e-151 538.5 440 61.8
CARHR140980 Cardamine hirsuta HOM05D004999 ORTHO05D007513 6.5e-151 538.1 435 62.8
A04p33990 Brassica napus HOM05D004999 ORTHO05D007513 1.4e-150 537.0 446 60.8
unitig_749.g13859 Utricularia gibba HOM05D004999 ORTHO05D007513 1.4e-150 537.0 440 62.5
C04p71790 Brassica napus HOM05D004999 ORTHO05D007513 7.2e-150 534.6 448 61.4
Sabra02G0019000 Salix brachista HOM05D004999 ORTHO05D007513 1.1e-147 527.3 440 65.0
Hund05204 Selenicereus undatus HOM05D004999 ORTHO05D007513 2.6e-147 526.2 518 54.2
BcaB01g03255 Brassica carinata HOM05D004999 ORTHO05D007513 3.3e-147 525.8 446 60.3
Aa31LG9G12650 Aethionema arabicum HOM05D004999 ORTHO05D007513 2.8e-146 522.7 431 62.4
BcaC02g07075 Brassica carinata HOM05D004999 ORTHO05D007513 2.8e-146 522.7 445 60.7
BolC4t28677H Brassica oleracea HOM05D004999 ORTHO05D007513 2.8e-146 522.7 445 60.7
A03p25340 Brassica napus HOM05D004999 ORTHO05D007513 6.3e-146 521.5 444 59.5
BraA03t11740Z Brassica rapa HOM05D004999 ORTHO05D007513 7.0e-145 518.1 445 59.6
BcaC01g05108 Brassica carinata HOM05D004999 ORTHO05D007513 1.6e-144 516.9 444 59.5
Ah.04g153930 Amaranthus hybridus HOM05D004999 ORTHO05D007513 4.5e-144 515.4 447 60.0
ATR0767G249 Amborella trichopoda HOM05D004999 ORTHO05D007513 5.9e-144 515.0 475 59.2
HanXRQChr14g0430231 Helianthus annuus HOM05D004999 ORTHO05D007513 6.5e-143 511.5 454 61.7
AUR62007769 Chenopodium quinoa HOM05D004999 ORTHO05D007513 2.1e-141 506.5 444 60.8
BcaB02g09016 Brassica carinata HOM05D004999 ORTHO05D007513 3.6e-141 505.8 448 59.2
C03p30250 Brassica napus HOM05D004999 ORTHO05D007513 3.6e-141 505.8 444 58.3
FAN20G3168 Fragaria x ananassa HOM05D004999 ORTHO05D007513 4.7e-141 505.4 440 61.4
TPR.G34334 Trifolium pratense HOM05D004999 ORTHO05D007513 8.0e-141 504.6 418 65.6
AUR62002963 Chenopodium quinoa HOM05D004999 ORTHO05D007513 1.0e-140 504.2 445 60.7
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 1.0e-140 504.2 383 67.4
Os04g0112300 Oryza sativa ssp. japonica HOM05D004999 ORTHO05D007513 3.5e-136 489.2 473 56.7
Zm00001eb142530 Zea mays HOM05D004999 ORTHO05D007513 4.5e-136 488.8 464 55.8
CDE09G1336 Ceratophyllum demersum HOM05D004999 ORTHO05D007513 5.0e-135 485.3 481 55.1
HPP92_027505 Vanilla planifolia HOM05D004999 ORTHO05D007513 6.5e-135 485.0 475 56.4
Actinidia16981 Actinidia chinensis HOM05D004999 ORTHO05D007513 3.0e-132 476.1 451 60.3
Glyma.14G218500 Glycine max HOM05D004999 ORTHO05D007513 1.7e-130 470.3 390 64.1
BolC3t15374H Brassica oleracea HOM05D004999 ORTHO05D007513 4.3e-118 429.1 379 58.8
Potri.005G238200 Populus trichocarpa HOM05D004999 ORTHO05D007513 7.3e-110 401.7 299 70.2
Pp3c13_19410 Physcomitrium patens HOM05D004999 ORTHO05D007513 1.2e-107 394.4 443 50.1
MBI09_g25164_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D007513 8.3e-106 388.3 365 60.3
AagrBONN_evm.TU.Sc2ySwM_344.355 Anthoceros agrestis HOM05D004999 ORTHO05D007513 1.3e-103 380.9 485 45.8
Cpa.g.sc8.166 Carica papaya HOM05D004999 ORTHO05D007513 3.0e-103 379.8 366 57.4
Psat5g146560 Pisum sativum HOM05D004999 ORTHO05D007513 1.9e-102 377.1 303 65.3
HPP92_022409 Vanilla planifolia HOM05D004999 ORTHO05D007513 2.3e-95 353.6 274 67.9
Mapoly0050s0121 Marchantia polymorpha HOM05D004999 ORTHO05D007513 5.1e-95 352.4 521 41.1
SMO367G0765 Selaginella moellendorffii HOM05D004999 ORTHO05D007513 2.5e-94 350.1 478 43.7
CBR_g45432 Chara braunii HOM05D004999 ORTHO05D007513 1.3e-77 294.7 620 32.6
Oeu054699.1 Olea europaea HOM05D004999 ORTHO05D007513 2.4e-73 280.4 525 38.3
PRCOL_00001952 Prasinoderma coloniale HOM05D004999 ORTHO05D007513 3.5e-56 223.4 453 32.5
MCO06G251 Micromonas commoda HOM05D004999 ORTHO05D007513 1.5e-54 218.0 457 33.9
Cre12.g543100 Chlamydomonas reinhardtii HOM05D004999 ORTHO05D007513 1.0e-50 205.3 489 31.5
Zm00001eb363800 Zea mays HOM05D004999 ORTHO05D007513 2.7e-48 197.2 155 66.5
Thhalv10014705m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 9.7e-46 188.7 244 44.3
Thecc.08G043300 Theobroma cacao HOM05D004999 ORTHO05D007513 3.4e-43 180.3 243 48.1
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 2.6e-38 164.1 209 46.9
BolC9t55805H Brassica oleracea HOM05D004999 ORTHO05D040156 7.7e-27 125.9 213 43.2
C09p29400 Brassica napus HOM05D004999 ORTHO05D040156 5.0e-26 123.2 213 42.7
AL825U10010 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 1.5e-25 121.7 107 57.0
SEGI_23149 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 1.3e-21 108.6 94 62.8
C08p30330 Brassica napus HOM05D004999 ORTHO05D007513 4.1e-20 103.6 151 43.0
MBI18_g38864_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D012920 1.1e-17 95.5 138 42.8
MBI17_g46501_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D012920 4.2e-17 93.6 87 54.0
CAN.G566.39 Capsicum annuum HOM05D004999 ORTHO05D007513 5.5e-17 93.2 126 52.4
SEGI_39734 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 9.4e-17 92.4 233 29.6
SEGI_05081 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 1.2e-16 92.0 72 56.9
C02p41440 Brassica napus HOM05D004999 ORTHO05D024529 1.4e-15 88.6 110 46.4
C04p17480 Brassica napus HOM05D004999 ORTHO05D024529 2.0e-14 84.7 112 45.5
BcaC01g01121 Brassica carinata HOM05D004999 ORTHO05D024221 1.6e-11 75.1 62 61.3
A02p34280 Brassica napus HOM05D004999 ORTHO05D021597 1.3e-10 72.0 142 35.2
BolC4t23296H Brassica oleracea HOM05D004999 ORTHO05D024529 6.6e-10 69.7 93 45.2
BolC4t24340H Brassica oleracea HOM05D004999 ORTHO05D024529 2.5e-09 67.8 93 44.1
Migut.C00804 Erythranthe guttata HOM05D004999 ORTHO05D007513 4.2e-09 67.0 40 72.5
FAN24G3067 Fragaria x ananassa HOM05D004999 ORTHO05D209228 9.5e-09 65.9 67 55.2
SalBow3G3141 Salvia bowleyana HOM05D004999 ORTHO05D360697 1.8e-07 61.6 61 55.7
BolC3t21145H Brassica oleracea HOM05D004999 ORTHO05D024221 1.2e-06 58.9 79 48.1
BolC4t25844H Brassica oleracea HOM05D004999 ORTHO05D021597 5.7e-06 56.6 49 53.1


User provided reference genes

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